James Geller

James Geller

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James Geller

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Leveraging Horizontal Density Differences between Ontologies to Identify Missing Child Concepts: A Proof of Concept.

AMIA Annu Symp Proc 2018 5;2018:644-653. Epub 2018 Dec 5.

New Jersey Institute of Technology, Newark, New Jersey, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6371323PMC
October 2019

How Sustainable are Biomedical Ontologies?

AMIA Annu Symp Proc 2018 5;2018:470-479. Epub 2018 Dec 5.

Stanford University, Stanford, CA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6371329PMC
September 2019

Treatment of stage I anaplastic Wilms' tumour: a report from the Children's Oncology Group AREN0321 study.

Eur J Cancer 2019 Sep 17;118:58-66. Epub 2019 Jul 17.

Division of Oncology, Children's National Medical Center, Center for Cancer and Blood Disorders, George Washington University School of Medicine and Health Sciences, 111 Michigan Avenue NW, Washington, DC 20010, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ejca.2019.05.033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6690766PMC
September 2019

Treatment of advanced pediatric renal cell carcinoma.

Pediatr Blood Cancer 2019 Aug 23;66(8):e27766. Epub 2019 Apr 23.

Division of Oncology, Cincinnati Children's Hospital Medical Center, University of Cincinnati, Cincinnati, Ohio.

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http://dx.doi.org/10.1002/pbc.27766DOI Listing
August 2019

An Ensemble Deep Learning Model for Drug Abuse Detection in Sparse Twitter-Sphere.

Stud Health Technol Inform 2019 Aug;264:163-167

Information Systems & Informatics, City University of New York, Staten Island, NY, USA.

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http://www.medra.org/servlet/aliasResolver?alias=iospressISB
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http://dx.doi.org/10.3233/SHTI190204DOI Listing
August 2019

Surgical and anesthetic management for hepatectomy in two pediatric patients with trisomy 18, pulmonary hypertension, and hepatoblastoma.

Pediatr Blood Cancer 2019 Jun 25;66(6):e27678. Epub 2019 Feb 25.

Division of Pediatric Hematology/Oncology, Providence Sacred Heart Children's Hospital, Spokane, Washington.

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http://dx.doi.org/10.1002/pbc.27678DOI Listing
June 2019

Alternative classification of identical concepts in different terminologies: Different ways to view the world.

J Biomed Inform 2019 Jun 7;94:103193. Epub 2019 May 7.

New Jersey Institute of Technology, Newark, NJ, USA.

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http://dx.doi.org/10.1016/j.jbi.2019.103193DOI Listing
June 2019

Reply to L. Xie et al.

J Clin Oncol 2019 May 15;37(14):1264-1265. Epub 2019 Mar 15.

Elizabeth A. Mullen, MD, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA; Geetika Khanna, MD, Washington University School of Medicine, St Louis, MO; James I. Geller, MD, Cincinnati Children's Hospital Medical Center, Cincinnati, OH; Conrad V. Fernandez, MD, Dalhousie University, Halifax, Nova Scotia, Canada; and Jeffrey S. Dome, MD, PhD, Children's National Health System, Washington, DC.

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http://dx.doi.org/10.1200/JCO.19.00012DOI Listing
May 2019

Dose modifications and pharmacokinetics of adjuvant cisplatin monotherapy while on hemodialysis for patients with hepatoblastoma.

Pediatr Blood Cancer 2019 01 30;66(1):e27425. Epub 2018 Aug 30.

Division of Oncology, Cancer and Blood Diseases Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.

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http://dx.doi.org/10.1002/pbc.27425DOI Listing
January 2019

Acquired ornithine transcarbamylase deficiency in pediatric and adolescent patients with fibrolamellar hepatocellular carcinoma.

Pediatr Blood Cancer 2018 12 9;65(12):e27392. Epub 2018 Aug 9.

Division of Pediatric Oncology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.

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http://dx.doi.org/10.1002/pbc.27392DOI Listing
December 2018

Hepatoblastoma-The Evolution of Biology, Surgery, and Transplantation.

Children (Basel) 2018 Dec 21;6(1). Epub 2018 Dec 21.

Division of General and Thoracic Surgery, Cincinnati Children's Hospital Medical Center, 3333 Burnet Ave, Cincinnati, OH 45229, USA.

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http://www.mdpi.com/2227-9067/6/1/1
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http://dx.doi.org/10.3390/children6010001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6352070PMC
December 2018

Using Convolutional Neural Networks to Support Insertion of New Concepts into SNOMED CT.

AMIA Annu Symp Proc 2018 5;2018:750-759. Epub 2018 Dec 5.

New Jersey Institute of Technology, Newark, NJ.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6371320PMC
December 2018

Overlapping Complex Concepts Have More Commission Errors, Especially in Intensive Terminology Auditing.

AMIA Annu Symp Proc 2018 5;2018:1157-1166. Epub 2018 Dec 5.

National Library of Medicine, Bethesda, MD, US.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6371375PMC
December 2018

Extended Analysis of Topological-Pattern-Based Ontology Enrichment.

Proceedings (IEEE Int Conf Bioinformatics Biomed) 2018 Dec 24;2018:1641-1648. Epub 2019 Jan 24.

Department of Computer Science, New Jersey Institute of Technology, Newark, NJ USA,

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http://dx.doi.org/10.1109/BIBM.2018.8621564DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6402505PMC
December 2018

Surgical management of children and adolescents with upfront completely resected hepatocellular carcinoma.

Pediatr Blood Cancer 2018 11 3;65(11):e27293. Epub 2018 Jul 3.

Division of Oncology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.

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http://doi.wiley.com/10.1002/pbc.27293
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http://dx.doi.org/10.1002/pbc.27293DOI Listing
November 2018

Quality assurance of biomedical terminologies and ontologies.

J Biomed Inform 2018 10 8;86:106-108. Epub 2018 Sep 8.

Department of Computer Science and Institute for Biomedical Informatics, University of Kentucky, United States. Electronic address:

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http://dx.doi.org/10.1016/j.jbi.2018.09.006DOI Listing
October 2018

Impact of Surveillance Imaging Modality on Survival After Recurrence in Patients With Favorable-Histology Wilms Tumor: A Report From the Children's Oncology Group.

J Clin Oncol 2018 Oct 18:JCO1800076. Epub 2018 Oct 18.

Elizabeth A. Mullen, Dana-Farber Cancer Institute/Boston Children's Cancer and Blood Disorders Center, Boston, MA; Yueh-Yun Chi and Emily Hibbitts, University of Florida, Gainesville, FL; James R. Anderson, Merck Research Laboratories, North Wales, PA; Katarina J. Steacy, University of Maryland Medical Center, Baltimore, MD; James I. Geller, Cincinnati Children's Hospital Medical Center, Cincinnati, OH; Daniel M. Green, St Jude Children's Research Hospital, Memphis, TN; Geetika Khanna, Washington University School of Medicine, St Louis, MO; Marcio H. Malogolowkin, University of California at Davis Comprehensive Cancer Center, Sacramento, CA; Paul E. Grundy, Stollery Children's Hospital, University of Alberta, Alberta; Conrad V. Fernandez, IWK Health Center, Dalhousie University Halifax, Nova Scotia, Canada; and Jeffrey S. Dome, Children's National Health System, George Washington University School of Medicine and Health Sciences, Washington, DC.

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http://dx.doi.org/10.1200/JCO.18.00076DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6269130PMC
October 2018

Reply to D.M. Green.

J Clin Oncol 2018 Sep 13:JCO1800659. Epub 2018 Sep 13.

David B. Dix, British Columbia Children's Hospital, Vancouver, BC, Canada; Nita L. Seibel, National Cancer Institute, Bethesda, MD; Yueh-Yun Chi, University of Florida, Gainesville, FL; Geetika Khanna, Washington University School of Medicine, St Louis, MO; Elizabeth A. Mullen, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA; James I. Geller, Cincinnati Children's Hospital Medical Center, Cincinnati, OH; John A. Kalapurakal, Lurie Comprehensive Cancer Centre of Northwestern University, Chicago, IL; Peter F. Ehrlich, University of Michigan, Ann Arbor, MI; Marcio H. Malogolowkin, University of California at Davis Comprehensive Cancer Center, Sacramento, CA; Conrad V. Fernandez, IWK Health Center, Dalhousie University, Halifax, NS, Canada; and Jeffrey S. Dome, Children's National Health System, George Washington University School of Medicine and Health Sciences, Washington, DC.

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http://ascopubs.org/doi/10.1200/JCO.18.00659
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http://dx.doi.org/10.1200/JCO.18.00659DOI Listing
September 2018

Perceiving the Usefulness of the National Cancer Institute Metathesaurus for Enriching NCIt with Topological Patterns.

Stud Health Technol Inform 2017 ;245:863-867

Department of Computer Science, New Jersey Institute of Technology, Newark, NJ, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5785238PMC
June 2018

Summarizing an Ontology: A "Big Knowledge" Coverage Approach.

Stud Health Technol Inform 2017 ;245:978-982

College of Computing, New Jersey Institute of Technology, Newark, NJ 07102-1982, USA.

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June 2018

Treatment of Stage IV Favorable Histology Wilms Tumor With Lung Metastases: A Report From the Children's Oncology Group AREN0533 Study.

J Clin Oncol 2018 06 16;36(16):1564-1570. Epub 2018 Apr 16.

David B. Dix, British Columbia Children's Hospital, Vancouver, British Columbia; Paul E. Grundy, University of Alberta, Edmonton, Alberta; Conrad V. Fernandez, Dalhousie University, Halifax, Nova Scotia, Canada; Nita L. Seibel, National Cancer Institute, Bethesda, MD; Yueh-Yun Chi, University of Florida, Gainesville, FL; Geetika Khanna, Washington University School of Medicine, St Louis, MO; Eric Gratias, University of Tennessee College of Medicine Chattanooga, Chattanooga, TN; James R. Anderson, Merck Research Laboratories, North Wales, PA; Elizabeth A. Mullen, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA; James I. Geller, Cincinnati Children's Hospital Medical Center, Cincinnati; Julie M. Gastier-Foster and Elizabeth Wagner, Nationwide Children's Hospital; Julie M. Gastier-Foster, The Ohio State University College of Medicine, Columbus, OH; John A. Kalapurakal, Lurie Comprehensive Cancer Centre of Northwestern University; Elizabeth J. Perlman, Ann and Robert H. Lurie Children's Hospital, Chicago, IL; Arnold C. Paulino, MD Anderson Cancer Center, Houston, TX; Peter F. Ehrlich, University of Michigan, Ann Arbor, MI; Marcio Malogolowkin, University of California at Davis Comprehensive Cancer Center, Sacramento, CA; Jeffrey S. Dome, George Washington University School of Medicine and Health Sciences, Washington, DC; on behalf of the AREN0533 Study Committee.

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http://dx.doi.org/10.1200/JCO.2017.77.1931DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6075846PMC
June 2018

Reply to B. Zhang et al.

J Clin Oncol 2018 05 3;36(14):1454-1455. Epub 2018 Apr 3.

Conrad V. Fernandez, Dalhousie University, Halifax, Nova Scotia, Canada; Elizabeth J. Perlman, Ann and Robert H. Lurie Children's Hospital, Chicago, IL; Julie Gastier-Foster, Nationwide Children's Hospital, Columbus, OH; James I. Geller, Cincinnati Children's Hospital Medical Centre, Cincinnati, OH; Elizabeth A. Mullen, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA; Peter F. Ehrlich, University of Michigan, Ann Arbor, MI; and Jeffrey S. Dome, Children's National Medical Center, Washington, DC.

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http://dx.doi.org/10.1200/JCO.2018.78.0445DOI Listing
May 2018

Fractures in children with newly diagnosed hepatoblastoma.

Pediatr Radiol 2018 04 8;48(4):581-585. Epub 2017 Dec 8.

Department of Radiology, Nemours Children's Health System, Nemours Children's Hospital, Orlando, FL, USA.

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http://dx.doi.org/10.1007/s00247-017-4050-3DOI Listing
April 2018

Germline APC mutations in hepatoblastoma.

Pediatr Blood Cancer 2018 04 18;65(4). Epub 2017 Dec 18.

Division of Oncology, Cincinnati Children's Hospital Medical Center, University of Cincinnati, Cincinnati, Ohio.

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http://dx.doi.org/10.1002/pbc.26892DOI Listing
April 2018

Outcome and Prognostic Factors in Stage III Favorable-Histology Wilms Tumor: A Report From the Children's Oncology Group Study AREN0532.

J Clin Oncol 2018 01 6;36(3):254-261. Epub 2017 Dec 6.

Conrad V. Fernandez, IWK Health Centre, Dalhousie University, Halifax, Nova Scotia; Paul E. Grundy, University of Alberta, Edmonton, Alberta, Canada; Elizabeth A. Mullen, Dana-Farber/Boston Children's Cancer and Blood Disorders Centre, Boston; Thomas E. Hamilton and Robert C. Shamberger, Boston Children's Hospital, Boston, MA; Yueh-Yun Chi and Yeonil Kim, University of Florida, Gainesville, FL; Peter F. Ehrlich, University of Michigan, Ann Arbor, MI; Elizabeth J. Perlman, Ann and Robert H. Lurie Children's Hospital, Chicago; John A. Kalapurakal, Lurie Comprehensive Cancer Center of Northwestern University, Chicago, IL; Geetika Khanna, Washington University School of Medicine in St Louis, St Louis, MO; Arnold C. Paulino, MD Anderson Cancer Center, Houston, TX; Kenneth W. Gow, Seattle Children's Hospital, Seattle, WA; Zelig Tochner, University of Pennsylvania, Philadelphia; James R. Anderson, Merck Research Laboratories-Oncology, North Wales, PA; Fredric A. Hoffer, Imaging & Radiation Oncology Core Group in Rhode Island, Lincoln, RI; Janice S. Withycombe, Children's Healthcare of Atlanta, Emory University, Atlanta, GA; James I. Geller, Cincinnati Children's Hospital Medical Centre, Cincinnati, OH; and Jeffrey S. Dome, Children's National Medical Center, Washington, DC, for the Children's Oncology Group AREN0532 Committee.

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http://dx.doi.org/10.1200/JCO.2017.73.7999DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5773840PMC
January 2018

Imaging of renal medullary carcinoma in children and young adults: a report from the Children's Oncology Group.

Pediatr Radiol 2017 Nov 8;47(12):1615-1621. Epub 2017 Jul 8.

Mallinckrodt Institute of Radiology, Washington University School of Medicine, 510 S. Kingshighway, Campus Box 8131, St. Louis, MO, 63110, USA.

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http://dx.doi.org/10.1007/s00247-017-3926-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5768308PMC
November 2017

Auditing the Assignments of Top-Level Semantic Types in the UMLS Semantic Network to UMLS Concepts.

Proceedings (IEEE Int Conf Bioinformatics Biomed) 2017 Nov 18;2017:1262-1269. Epub 2017 Dec 18.

Department of Health Outcomes and Policy, University of Florida, Gainesville, FL,

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http://dx.doi.org/10.1109/BIBM.2017.8217840DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5786167PMC
November 2017

Quality assurance of chemical ingredient classification for the National Drug File - Reference Terminology.

J Biomed Inform 2017 09 16;73:30-42. Epub 2017 Jul 16.

Department of Computer Science, New Jersey Institute of Technology, Newark, NJ 07102, United States. Electronic address:

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http://dx.doi.org/10.1016/j.jbi.2017.07.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5652327PMC
September 2017

Results of the First Prospective Multi-institutional Treatment Study in Children With Bilateral Wilms Tumor (AREN0534): A Report From the Children's Oncology Group.

Ann Surg 2017 09;266(3):470-478

*Section of Pediatric Surgery CS Mott Children's Hospital, University of Michigan, Ann Arbor MI †COG Data Center, University of Florida, Gainesville, FL ‡Texas Children's Cancer Center at Baylor College of Medicine, Houston, TX §Fred Hutchison Cancer Center, University of Washington, Seattle, WA ¶Ann and Robert H Lurie Children's Hospital, Chicago, IL ||Northwestern University, Chicago, IL **Walter Reed National Military Medical Center, Washington DC ††Boston Children's Hospital and Dana Farber Cancer Center, Boston, MA ‡‡Washington University of St Louis, St Louis, MO §§University of Washington, Seattle, WA ¶¶MD Anderson Cancer Center, Houston, TX ||||Children's Oncology Group, Philadelphia, PA ***Cincinnati Children's Hospital, Cincinnati, OH †††University of Alberta Children's Hospital, Edmonton, Alberta, Canada ‡‡‡IWK Children's Hospital, Halifax, Nova Scotia, Canada §§§Phoenix Children's Hospital, Phoenix, AZ ¶¶¶Children National Medical Center, Washington, DC.

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http://dx.doi.org/10.1097/SLA.0000000000002356DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5629006PMC
September 2017

Topological-Pattern-Based Recommendation of UMLS Concepts for National Cancer Institute Thesaurus.

AMIA Annu Symp Proc 2016 10;2016:618-627. Epub 2017 Feb 10.

Department of Computer Science, New Jersey Institute of Technology, Newark, NJ.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5333219PMC
July 2017

Review of phase I and II trials for Wilms' tumour - Can we optimise the search for novel agents?

Eur J Cancer 2017 07 15;79:205-213. Epub 2017 May 15.

Department of Hematology and Pediatric Onco-Hematology, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy.

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http://dx.doi.org/10.1016/j.ejca.2017.04.005DOI Listing
July 2017

An empirical analysis of ontology reuse in BioPortal.

J Biomed Inform 2017 07 2;71:165-177. Epub 2017 Jun 2.

Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1016/j.jbi.2017.05.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5557647PMC
July 2017

TFE3-positive renal cell carcinoma occurring in three children with dysfunctional kidneys on immunosuppression.

Pediatr Transplant 2017 Jun 21;21(4). Epub 2017 Mar 21.

Cancer and Blood Diseases Institute, Cincinnati Children's Hospital Medical Center, University of Cincinnati, Cincinnati, OH, USA.

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http://dx.doi.org/10.1111/petr.12912DOI Listing
June 2017

Surgical management and surveillance of pediatric appendiceal carcinoid tumor.

J Pediatr Surg 2017 Jun 15;52(6):925-927. Epub 2017 Mar 15.

Division of Pediatric General and Thoracic Surgery, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, United States. Electronic address:

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http://dx.doi.org/10.1016/j.jpedsurg.2017.03.012DOI Listing
June 2017

Preliminary Analysis of Difficulty of Importing Pattern-Based Concepts into the National Cancer Institute Thesaurus.

Authors:
Zhe He James Geller

Stud Health Technol Inform 2016 ;228:389-93

Department of Computer Science, New Jersey Institute of Technology.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5785234PMC
April 2017

Expansion of the Hierarchical Terminology Auditing Framework Through Usage of Levenshtein Distance-Based Criterion.

Stud Health Technol Inform 2016 ;228:491-5

New Jersey Institute of Technology, Newark, NJ.

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April 2017

Clinical Outcome and Biological Predictors of Relapse After Nephrectomy Only for Very Low-risk Wilms Tumor: A Report From Children's Oncology Group AREN0532.

Ann Surg 2017 04;265(4):835-840

*IWK Health Center, Dalhousie University, Halifax, Nova Scotia, Canada †Ann and Robert H. Lurie Children's Hospital, Chicago, IL ‡Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA §Department of Biostatistics, University of Florida, Gainesville, FL ¶Boston Children's Hospital, Boston, MA ||Division of General and Thoracic Surgery, Seattle Children's Hospital, Seattle, WA **Connecticut Children's Medical Center, Hartford, CT ††Primary Children's Hospital, Salt Lake City, UT ‡‡University of Michigan, Ann Arbor, MI §§Washington University School of Medicine in St. Louis, St. Louis, MO ¶¶Lurie Comprehensive Cancer Center of Northwestern University, Chicago, IL ||||Anderson Cancer Center, Houston, TX ***Children's Oncology Group Data Center, University of Florida, Gainesville, FL †††Cincinnati Children's Hospital Medical Center, Cincinnati, OH ‡‡‡Alberta Health Services, Edmonton, Alberta, Canada §§§Merck Research Laboratories - Oncology, North Wales, PA ¶¶¶Children's National Medical Center, District of Columbia, WA.

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http://dx.doi.org/10.1097/SLA.0000000000001716DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5145762PMC
April 2017

Introducing the Big Knowledge to Use (BK2U) challenge.

Ann N Y Acad Sci 2017 01 17;1387(1):12-24. Epub 2016 Oct 17.

First Databank Inc, San Francisco, California.

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http://dx.doi.org/10.1111/nyas.13225DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5266662PMC
January 2017

Auditing of SNOMED CT's Hierarchical Structure using the National Drug File - Reference Terminology.

Stud Health Technol Inform 2015 ;210:130-4

New Jersey Institute of Technology, Newark, NJ.

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October 2016

Generation of pediatric liver cancer patient-derived xenograft platforms for pediatric liver cancer: A critical stage in the development of anticancer treatments.

Hepatology 2016 10 2;64(4):1017-9. Epub 2016 Aug 2.

Division of Surgery, Cincinnati Children's Hospital Medical Center, Cincinnati, OH.

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http://dx.doi.org/10.1002/hep.28711DOI Listing
October 2016

Association of Chromosome 1q Gain With Inferior Survival in Favorable-Histology Wilms Tumor: A Report From the Children's Oncology Group.

J Clin Oncol 2016 09 11;34(26):3189-94. Epub 2016 Jul 11.

Eric J. Gratias, University of Tennessee College of Medicine-Chattanooga, Chattanooga, TN; Jeffrey S. Dome, Children's National Health System, Washington, DC; Lawrence J. Jennings and Elizabeth J. Perlman, Northwestern University, Chicago, IL; Yueh-Yun Chi and Jing Tian, University of Florida, Gainesville, FL; James Anderson, University of Nebraska Medical Center, Omaha, NE; Paul Grundy, University of Alberta, Edmonton, Alberta; Conrad V. Fernandez, Dalhousie University and the IWK Health Centre, Halifax, Nova Scotia, Canada; Elizabeth A. Mullen, Boston Children's Hospital and Dana-Farber Cancer Institute, Boston, MA; and James I. Geller, University of Cincinnati, Cincinnati, OH.

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http://dx.doi.org/10.1200/JCO.2015.66.1140DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5012705PMC
September 2016

A unified software framework for deriving, visualizing, and exploring abstraction networks for ontologies.

J Biomed Inform 2016 08 23;62:90-105. Epub 2016 Jun 23.

Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987206PMC
http://dx.doi.org/10.1016/j.jbi.2016.06.008DOI Listing
August 2016

Safety and Efficacy of Gadoxetate Disodium-Enhanced Liver MRI in Pediatric Patients Aged >2 Months to <18 Years-Results of a Retrospective, Multicenter Study.

Magn Reson Insights 2016 21;9:21-8. Epub 2016 Jul 21.

Bayer Pharma AG, Berlin, Germany.; Department of Gynecology, Obstetrics and Reproductive Medicine, University Medical School of Saarland, Homburg/Saar, Germany.

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http://dx.doi.org/10.4137/MRI.S39091DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4957604PMC
August 2016

Gardner Fibroma: Clinical and Histopathologic Implications of Germline APC Mutation Association.

J Pediatr Hematol Oncol 2016 07;38(5):e154-7

*Department of Pediatrics Divisions of †Pathology and Laboratory Medicine ‡Human Genetics §Cancer and Blood Disease Institute, Cincinnati Children's Hospital Medical Center, University of Cincinnati, Cincinnati, OH.

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http://dx.doi.org/10.1097/MPH.0000000000000493DOI Listing
July 2016

Biology and Treatment of Rhabdoid Tumor.

Crit Rev Oncog 2015 ;20(3-4):199-216

Department of Pediatrics, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania; Department of Pathology and Laboratory Medicine, Children's Hospital Los Angeles; Keck School of Medicine, University of Southern California, Los Angeles, Ca.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6087667PMC
June 2016

Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies.

J Biomed Inform 2016 06 14;61:63-76. Epub 2016 Mar 14.

Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1016/j.jbi.2016.03.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4893909PMC
June 2016

Predicting Comorbid Conditions and Trajectories using Social Health Records.

IEEE Trans Nanobioscience 2016 06 5;15(4):371-379. Epub 2016 May 5.

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http://dx.doi.org/10.1109/TNB.2016.2564299DOI Listing
June 2016

Quality assurance of the gene ontology using abstraction networks.

J Bioinform Comput Biol 2016 06 24;14(3):1642001. Epub 2015 Nov 24.

‡ Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SA, UK.

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http://dx.doi.org/10.1142/S0219720016420014DOI Listing
June 2016

ALK-rearranged renal cell carcinomas in children.

Genes Chromosomes Cancer 2016 May 23;55(5):442-51. Epub 2016 Feb 23.

Department of Pathology and Laboratory Medicine, Ann & Robert H. Lurie Children's Hospital of Chicago and Northwestern University Feinberg School of Medicine, Chicago, IL.

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http://dx.doi.org/10.1002/gcc.22346DOI Listing
May 2016

Relapsed hepatoblastoma confined to the lung is effectively treated with pulmonary metastasectomy.

J Pediatr Surg 2016 Apr 24;51(4):525-9. Epub 2015 Oct 24.

Division of Pediatric Surgery, Michael E. DeBakey Department of Surgery, Texas Children's Hospital Liver Tumor Center, Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, Texas. Electronic address:

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http://dx.doi.org/10.1016/j.jpedsurg.2015.10.053DOI Listing
April 2016

Expanding the Spectrum of Renal Tumors in Children: Primary Renal Myoepithelial Carcinomas With a Novel EWSR1-KLF15 Fusion.

Am J Surg Pathol 2016 Mar;40(3):386-94

*Department of Pathology and Laboratory Medicine, Robert Lurie Cancer Center, Ann & Robert H. Lurie Children's Hospital of Chicago, Northwestern University Feinberg School of Medicine, Chicago, IL †Department of Pathology, Colorado Pathology Consultants, Saint Joseph Hospital, Denver, CO ‡LMC Pathology Services, Sunrise Children's Hospital, Las Vegas, NV §Department of Pediatric Hematology/Oncology ∥Spectrum Health Regional Laboratory, Helen DeVos Children's Hospital, Grand Rapids, MI ¶Division of Pediatric Oncology, Cincinnati Children's Hospital Medical Center, University of Cincinnati, Cincinnati, OH.

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http://dx.doi.org/10.1097/PAS.0000000000000545DOI Listing
March 2016

Pediatric cystic nephromas: distinctive features and frequent DICER1 mutations.

Hum Pathol 2016 Feb 28;48:81-7. Epub 2015 Oct 28.

Department of Pathology and Laboratory Medicine, Ann & Robert H. Lurie Children's Hospital of Chicago and Northwestern University Feinberg School of Medicine, Chicago, IL 60611.

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February 2016

DICER1 Mutations and Differentiated Thyroid Carcinoma: Evidence of a Direct Association.

J Clin Endocrinol Metab 2016 Jan 10;101(1):1-5. Epub 2015 Nov 10.

Division of Endocrinology (M.M.R.), Cincinnati Children's Hospital Medical Center and University of Cincinnati, Cincinnati, Ohio 45229; PRIMA Pediatrics (P.J.), Cumberland, Rhode Island 02864; Division of Cancer and Blood Disorders (K.A.P.S., A.K.H.), Children's Hospitals and Clinics of Minnesota, Minneapolis, Minnesota 55404; International Ovarian and Testicular Stromal Tumor Registry (K.A.P.S., A.K.H., D.A.H.), Minneapolis, Minnesota 55404; Waukesha County Medical Examiner's Office (A.S.), Waukesha, Wisconsin 53188; Division of Endocrinology and Diabetes (A.J.B.), Children's Hospital of Philadelphia, Philadelphia, Pennsylvania 19104; Department of Pathology (A.L.F., D.A.H.), Children's National Medical Center and Center for Genetic Medicine Research, Children's Research Institute, Washington, DC 20010; and Division of Oncology (J.G.), Cincinnati Children's Hospital Medical Center and University of Cincinnati, Cincinnati, Ohio 45229.

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January 2016

Selective Ophthalmic Artery Infusion Chemotherapy for Advanced Intraocular Retinoblastoma: CCHMC Early Experience.

J Pediatr Hematol Oncol 2016 Jan;38(1):65-9

*Division of Oncology †Department of Radiology, Cincinnati Children's Hospital Medical Center ‡Department of Ophthalmology, University of Cincinnati, Cincinnati, OH.

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January 2016

Current standards of care and future directions for "high-risk" pediatric renal tumors: Anaplastic Wilms tumor and Rhabdoid tumor.

Authors:
James I Geller

Urol Oncol 2016 Jan 21;34(1):50-6. Epub 2015 Nov 21.

Division of Oncology, Cincinnati Children׳s Hospital Medical Center, University of Cincinnati, Cincinnati, OH. Electronic address:

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January 2016

Adjunctive techniques for optimization of ocular hemodynamics in children undergoing ophthalmic artery infusion chemotherapy.

J Neurointerv Surg 2015 Oct 1;7(10):770-6. Epub 2014 Sep 1.

Department of Ophthalmology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA Department of Ophthalmology, University of Cincinnati College of Medicine, Cincinnati, Ohio, USA.

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October 2015

Advances in Wilms Tumor Treatment and Biology: Progress Through International Collaboration.

J Clin Oncol 2015 Sep 24;33(27):2999-3007. Epub 2015 Aug 24.

Jeffrey S. Dome, Children's National Health System, Washington, DC; James I. Geller, Cincinnati Children's Hospital Medical Center, Cincinnati, OH; Elizabeth A. Mullen, Dana-Farber Cancer Institute, Boston, MA; Norbert Graf, Saarland University, Homburg, Germany; Conrad V. Fernandez, IWK Health Centre, Halifax, Nova Scotia, Canada; Filippo Spreafico, Fondazione Istituto di Ricovero e Cura a Carattere Scientifico, Istituto Nazionale dei Tumori, Milan, Italy; Marry Van den Heuvel-Eibrink, Princess Màxima Center for Pediatric Oncology, Utrecht, the Netherlands; and Kathy Pritchard-Jones, University College London Institute of Child Health, London, United Kingdom.

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September 2015

Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network.

J Biomed Inform 2015 Aug 3;56:127-44. Epub 2015 Jun 3.

Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305, USA.

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August 2015

Characterization of adolescent and pediatric renal cell carcinoma: A report from the Children's Oncology Group study AREN03B2.

Cancer 2015 Jul 6;121(14):2457-64. Epub 2015 Apr 6.

Department of Pathology, Lurie Children's Hospital of Chicago, Northwestern University Feinberg School of Medicine, Chicago, Illinois.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4588054PMC
July 2015

A tribal abstraction network for SNOMED CT target hierarchies without attribute relationships.

J Am Med Inform Assoc 2015 May 20;22(3):628-39. Epub 2014 Oct 20.

Department of Biomedical Informatics, Columbia University, New York, New Jersey, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6283061PMC
May 2015

Scalable quality assurance for large SNOMED CT hierarchies using subject-based subtaxonomies.

J Am Med Inform Assoc 2015 May 21;22(3):507-18. Epub 2014 Oct 21.

Computer Science Department, New Jersey Institute of Technology, Newark, New Jersey, USA.

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May 2015

Vincristine-associated neurological morbidity in the treatment of hepatoblastoma.

J Pediatr Hematol Oncol 2015 May;37(4):e258-63

*Division of Oncology, Cincinnati Children's Hospital Medical Center, Cancer and Blood Diseases Institute Departments of †Pediatrics ‡Surgery, University of Cincinnati, Cincinnati, OH.

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May 2015

A comparative analysis of the density of the SNOMED CT conceptual content for semantic harmonization.

Artif Intell Med 2015 May 2;64(1):29-40. Epub 2015 Apr 2.

Department of Computer Information Systems, Borough of Manhattan Community College, City University New York, New York, NY 10007, USA.

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May 2015

Prechemotherapy robotic-assisted laparoscopic radical nephrectomy for an adolescent with Wilms tumor.

J Pediatr Hematol Oncol 2015 Mar;37(2):e125-7

Divisions of *Pediatric Urology ‡Pediatric Oncology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH †Department of Surgery, Division of Urology, University of Colorado School of Medicine and the Children's Hospital Colorado, Aurora, CO.

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March 2015

Categorizing the Relationships between Structurally Congruent Concepts from Pairs of Terminologies for Semantic Harmonization.

AMIA Jt Summits Transl Sci Proc 2014 7;2014:48-53. Epub 2014 Apr 7.

Halfpenny Technologies, Blue Bell, PA.

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February 2015

Sculpting the UMLS Refined Semantic Network.

Online J Public Health Inform 2014 16;6(2):e181. Epub 2014 Oct 16.

Department of Computer Science, New Jersey Institute of Technology, Newark, NJ, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4235323PMC
November 2014

DICER1 mutations in childhood cystic nephroma and its relationship to DICER1-renal sarcoma.

Mod Pathol 2014 Sep 31;27(9):1267-80. Epub 2014 Jan 31.

1] Division of Pathology, and Children's National Medical Center, George Washington University School of Medicine & Health Sciences, Washington, DC, USA [2] Center for Genetic Medicine Research, Children's Research Institute, Minneapolis, MN, USA [3] International Pleuropulmonary Blastoma Registry, Children's Hospitals and Clinics of Minnesota, Minneapolis, MN, USA [4] Integrative Systems Biology, George Washington University School of Medicine & Health Sciences, Washington, DC, USA.

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September 2014

The initial experience with RENAL Nephrometry in children, adolescents, and young adults with renal tumors.

Pediatr Blood Cancer 2014 Aug 9;61(8):1434-9. Epub 2014 Mar 9.

Division of Urology, University of Colorado School of Medicine, Aurora, Colorado; Division of Urology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.

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August 2014

Managing the consequences of aggressive conservative treatment for refractory retinoblastoma with vitreous seeding.

Arq Bras Oftalmol 2014 Aug;77(4):256-8

University of Cincinnati Medical School, University of Cincinnati Medical Center, Cincinnati, OH, USA.

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August 2014

Mapping biological entities using the longest approximately common prefix method.

BMC Bioinformatics 2014 Jun 14;15:187. Epub 2014 Jun 14.

Department of Library and Information Science, Yonsei University, 50 Yonsei-ro, Seoul 120-749, Korea.

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June 2014

High-grade transitional cell carcinoma of the bladder in a 5-year-old boy successfully treated with partial cystectomy and intravesical bacillus Calmette-Guerin.

J Pediatr Hematol Oncol 2014 May;36(4):e234-6

Divisions of *Oncology, Cancer, and Blood Diseases Institute †Pathology ‡Pediatric Urology, Cincinnati Childrens Hospital Medical Center, Cincinnati, OH.

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May 2014

Scalability of abstraction-network-based quality assurance to large SNOMED hierarchies.

AMIA Annu Symp Proc 2013 16;2013:1071-80. Epub 2013 Nov 16.

New Jersey Institute of Technology, Newark, NJ;

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May 2014

Multimodal therapy including liver transplantation for hepatic undifferentiated embryonal sarcoma.

Liver Transpl 2014 Feb 30;20(2):191-9. Epub 2013 Nov 30.

Departments of Pediatric Surgery, Cincinnati Children's Hospital Medical Center, Cincinnati, OH.

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February 2014

Urologic co-morbidities associated with sacrococcygeal teratoma and a rational plan for urologic surveillance.

Pediatr Blood Cancer 2013 Oct 17;60(10):1626-9. Epub 2013 Jun 17.

Division of Urology, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH, USA.

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October 2013

Pilot study of vincristine, oral irinotecan, and temozolomide (VOIT regimen) combined with bevacizumab in pediatric patients with recurrent solid tumors or brain tumors.

Pediatr Blood Cancer 2013 Sep 29;60(9):1447-51. Epub 2013 Apr 29.

Division of Oncology, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Lexington, Kentucky, USA.

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http://dx.doi.org/10.1002/pbc.24547DOI Listing
September 2013

Update on pediatric cancer predisposition syndromes.

Pediatr Blood Cancer 2013 Aug 26;60(8):1247-52. Epub 2013 Apr 26.

Center for Children's Cancer Research and Department of Pediatrics, University of Utah, Salt Lake City, Utah 84112, USA.

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August 2013

Renal rhabdomyosarcoma in a pancake kidney.

Urology 2013 Aug 29;82(2):458-60. Epub 2013 Apr 29.

Division of Pediatric Surgery of Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.

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August 2013

Multifocal hepatic neoplasia in 3 children with APC gene mutation.

Am J Surg Pathol 2013 Jul;37(7):1058-66

Department of Pathology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229-3039 , USA.

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July 2013