James C Gee

James C Gee

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James C Gee

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In vivo imaging of canine lung deformation: Effects of posture, pneumonectomy, and inhaled erythropoietin.

J Appl Physiol (1985) 2020 Jan 16. Epub 2020 Jan 16.

Department of Internal Medicine, University of Texas Southwestern Medical Center, United States.

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http://dx.doi.org/10.1152/japplphysiol.00647.2019DOI Listing
January 2020

Learning image-based spatial transformations via convolutional neural networks: A review.

Magn Reson Imaging 2019 12 11;64:142-153. Epub 2019 Jun 11.

Department of Radiology, University of Pennsylvania, Philadelphia, PA, United States of America.

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http://dx.doi.org/10.1016/j.mri.2019.05.037DOI Listing
December 2019

Automatic longitudinal montaging of adaptive optics retinal images using constellation matching.

Biomed Opt Express 2019 Dec 25;10(12):6476-6496. Epub 2019 Nov 25.

Scheie Eye Institute, Department of Ophthalmology, University of Pennsylvania, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1364/BOE.10.006476DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6913413PMC
December 2019

Whole mouse brain connectomics.

J Comp Neurol 2019 Sep 23;527(13):2146-2157. Epub 2018 Nov 23.

Department of Neurology, Duke Medical Center, Durham, North Carolina.

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http://doi.wiley.com/10.1002/cne.24560
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http://dx.doi.org/10.1002/cne.24560DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6467764PMC
September 2019

Human Disc Nucleotomy Alters Annulus Fibrosus Mechanics at Both Reference and Compressed Loads.

J Biomech Eng 2019 May 29. Epub 2019 May 29.

ASME Member, Biomedical Engineering, University of Delaware, 160 Colburn Lab, 150 Academy St, Newark, DE, 19716.

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http://dx.doi.org/10.1115/1.4043874DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6808005PMC
May 2019

Effect of Reconstruction Parameters on the Quantitative Analysis of Chest Computed Tomography.

J Thorac Imaging 2019 Mar;34(2):92-102

Edinburgh Imaging, Queen's Medical Research Institute, University of Edinburgh, Edinburgh, UK.

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http://Insights.ovid.com/crossref?an=00005382-201903000-0000
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http://dx.doi.org/10.1097/RTI.0000000000000389DOI Listing
March 2019

Automated data extraction and ensemble methods for predictive modeling of breast cancer outcomes after radiation therapy.

Med Phys 2019 Feb 28;46(2):1054-1063. Epub 2018 Dec 28.

Department of Radiation Oncology, University of Maryland School of Medicine, Baltimore, MD, 21201, USA.

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http://doi.wiley.com/10.1002/mp.13314
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http://dx.doi.org/10.1002/mp.13314DOI Listing
February 2019

Longitudinal structural gray matter and white matter MRI changes in presymptomatic progranulin mutation carriers.

Neuroimage Clin 2018 15;19:497-506. Epub 2018 May 15.

Penn Frontotemporal Degeneration Center, Department of Neurology, University of Pennsylvania, Philadelphia, PA, United States. Electronic address:

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http://dx.doi.org/10.1016/j.nicl.2018.05.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6029561PMC
January 2019

2D Modeling and Correction of Fan-beam Scan Geometry in OCT.

Comput Pathol Ophthalmic Med Image Anal (2018) 2018 Sep 14;11039:328-335. Epub 2018 Sep 14.

Department of Neurology, University of Pennsylvania, Philadelphia PA 19104, USA.

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http://link.springer.com/10.1007/978-3-030-00949-6_39
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http://dx.doi.org/10.1007/978-3-030-00949-6_39DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6534138PMC
September 2018

Tidal changes on CT and progression of ARDS.

Thorax 2017 11 20;72(11):981-989. Epub 2017 Jun 20.

Department of Radiology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.

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http://dx.doi.org/10.1136/thoraxjnl-2016-209833DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5738538PMC
November 2017

Automated segmentation of the choroid in EDI-OCT images with retinal pathology using convolution neural networks.

Fetal Infant Ophthalmic Med Image Anal (2017) 2017 Sep 9;10554:177-184. Epub 2017 Sep 9.

Department of Radiology, University of Pennsylvania, Philadelphia PA 19104, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5947958PMC
http://dx.doi.org/10.1007/978-3-319-67561-9_20DOI Listing
September 2017

Computational analysis in epilepsy neuroimaging: A survey of features and methods.

Neuroimage Clin 2016 23;11:515-529. Epub 2016 Feb 23.

Department of Bioengineering, University of Pennsylvania, 240 Skirkanich Hall, 210 South 33rd Street, Philadelphia, PA 19104-6321, USA; Department of Neurology, Hospital of the University of Pennsylvania, 3400 Spruce Street, 3 West Gates Bldg., Philadelphia, PA 19104, USA. Electronic address:

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http://dx.doi.org/10.1016/j.nicl.2016.02.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4833048PMC
December 2016

Arterial spin labeling perfusion predicts longitudinal decline in semantic variant primary progressive aphasia.

J Neurol 2016 Oct 5;263(10):1927-38. Epub 2016 Jul 5.

Department of Neurology, Penn Frontotemporal Degeneration Center, University of Pennsylvania Perelman School of Medicine, 3 West Gates, Philadelphia, PA, 19104, USA.

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http://dx.doi.org/10.1007/s00415-016-8221-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5097861PMC
October 2016

Neuropsychological Testing Predicts Cerebrospinal Fluid Amyloid-β in Mild Cognitive Impairment.

J Alzheimers Dis 2015 ;46(4):901-12

Department of Neurology, Perelman School of Medicine of the University of Pennsylvania, Philadelphia, PA, USA.

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http://dx.doi.org/10.3233/JAD-142943DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4699841PMC
June 2016

Visualizing the Propagation of Acute Lung Injury.

Anesthesiology 2016 Jan;124(1):121-31

From the Departments of Anesthesiology and Critical Care (M.C., N.M.), Radiology (Y.X., J.Z., Y.J., H.H., H.P., S.K., J.C., J.W., J.C.G., R.R.R.), and Pathology and Laboratory Medicine (C.G.D.), University of Pennsylvania, Philadelphia, Pennsylvania; and Department of Anesthesia, Hospital for Sick Children, University of Toronto, Toronto, Ontario, Canada (B.P.K.).

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http://dx.doi.org/10.1097/ALN.0000000000000916DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4681653PMC
January 2016

Measuring sparse temporal-variation for accurate registration of dynamic contrast-enhanced breast MR images.

Comput Med Imaging Graph 2015 Dec 19;46 Pt 1:73-80. Epub 2015 Jun 19.

Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.

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http://dx.doi.org/10.1016/j.compmedimag.2015.05.004DOI Listing
December 2015

Linear associations between clinically assessed upper motor neuron disease and diffusion tensor imaging metrics in amyotrophic lateral sclerosis.

PLoS One 2014 21;9(8):e105753. Epub 2014 Aug 21.

Department of Neurology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0105753PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4140827PMC
November 2015

Parenchymal texture analysis in digital mammography: A fully automated pipeline for breast cancer risk assessment.

Med Phys 2015 Jul;42(7):4149-60

Department of Radiology, Perelman School of Medicine, University of Pennsylvania, 3600 Market Street, Suite 370, Philadelphia, Pennsylvania 19104.

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http://dx.doi.org/10.1118/1.4921996DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4474947PMC
July 2015

Plasticity of the human visual system after retinal gene therapy in patients with Leber's congenital amaurosis.

Sci Transl Med 2015 Jul;7(296):296ra110

Center for Advanced Retinal and Ocular Therapeutics, University of Pennsylvania Perelman School of Medicine, 309 Stellar-Chance Labs, 422 Curie Boulevard, Philadelphia, PA 19104, USA. F.M. Kirby Center for Molecular Ophthalmology, Scheie Eye Institute, Department of Ophthalmology, University of Pennsylvania, Philadelphia, PA 19014, USA. Center for Cellular and Molecular Therapeutics at The Children's Hospital of Philadelphia, Colket Translational Research Building, 3501 Civic Center Boulevard, Philadelphia, PA 19014, USA.

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http://dx.doi.org/10.1126/scitranslmed.aaa8791DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617524PMC
July 2015

Parenchymal texture analysis in digital mammography: robust texture feature identification and equivalence across devices.

J Med Imaging (Bellingham) 2015 Apr 3;2(2):024501. Epub 2015 Apr 3.

University of Pennsylvania , Perelman School of Medicine, Department of Radiology, 3600 Market Street, Suite 360, Philadelphia, Pennsylvania 19104, United States.

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http://dx.doi.org/10.1117/1.JMI.2.2.024501DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4478863PMC
April 2015

Eigenanatomy: sparse dimensionality reduction for multi-modal medical image analysis.

Methods 2015 Feb 22;73:43-53. Epub 2014 Oct 22.

Penn Image Computing and Science Laboratory, University of Pennsylvania, Philadelphia, PA, United States; Department of Radiology, Hospital of the University of Pennsylvania, Philadelphia, PA, United States.

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http://dx.doi.org/10.1016/j.ymeth.2014.10.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4329066PMC
February 2015

Decomposing cerebral blood flow MRI into functional and structural components: a non-local approach based on prediction.

Neuroimage 2015 Jan 1;105:156-70. Epub 2014 Nov 1.

Penn Image Computing and Science Laboratory, University of Pennsylvania, Philadelphia, PA, USA; Department of Radiology, Hospital of the University of Pennsylvania, Philadelphia, PA, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2014.10.052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4356637PMC
January 2015

An open-source automated platform for three-dimensional visualization of subdural electrodes using CT-MRI coregistration.

Epilepsia 2014 Dec 6;55(12):2028-2037. Epub 2014 Nov 6.

Neurology, Perelman School of Medicine, Hospital of the University of Pennsylvania, Philadelphia, Pennsylvania, U.S.A; Penn Center for Neuroengineering and Therapeutics (CNT), Perelman School of Medicine, Philadelphia, Pennsylvania, U.S.A.

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http://doi.wiley.com/10.1111/epi.12827
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http://dx.doi.org/10.1111/epi.12827DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4285663PMC
December 2014

White matter disease contributes to apathy and disinhibition in behavioral variant frontotemporal dementia.

Cogn Behav Neurol 2014 Dec;27(4):206-14

*Penn Frontotemporal Degeneration Center, Department of Neurology †Penn Image Computing and Science Laboratory, Department of Radiology, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania ‡Centre for Medical Image Computing, Department of Computer Science, University College London, London, United Kingdom.

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http://dx.doi.org/10.1097/WNN.0000000000000044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4296883PMC
December 2014

Relating brain anatomy and cognitive ability using a multivariate multimodal framework.

Neuroimage 2014 Oct 13;99:477-86. Epub 2014 May 13.

Penn Frontotemporal Degeneration Center, Department of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2014.05.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4151353PMC
October 2014

Subject-specific functional parcellation via prior based eigenanatomy.

Neuroimage 2014 Oct 20;99:14-27. Epub 2014 May 20.

Penn Image Computing and Science Laboratory (PICSL), Department of Radiology, University of Pennsylvania, Philadelphia, PA, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2014.05.026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4382016PMC
October 2014

Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements.

Neuroimage 2014 Oct 29;99:166-79. Epub 2014 May 29.

Penn Image Computing and Science Laboratory, University of Pennsylvania, Philadelphia, PA, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2014.05.044DOI Listing
October 2014

The Insight ToolKit image registration framework.

Front Neuroinform 2014 28;8:44. Epub 2014 Apr 28.

Penn Image Computing and Science Laboratory, Department of Radiology, University of Pennsylvania Philadelphia, PA, USA.

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http://dx.doi.org/10.3389/fninf.2014.00044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4009425PMC
May 2014

Reproducibility of graph metrics of human brain structural networks.

Front Neuroinform 2014 7;8:46. Epub 2014 May 7.

Penn Image Computing and Science Laboratory, Department of Radiology, University of Pennsylvania Philadelphia, PA, USA.

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http://journal.frontiersin.org/article/10.3389/fninf.2014.00
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http://dx.doi.org/10.3389/fninf.2014.00046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4019854PMC
May 2014

Optic disc and cup segmentation from color fundus photograph using graph cut with priors.

Med Image Comput Comput Assist Interv 2013 ;16(Pt 2):75-82

Penn Image Computing and Science Laboratory (PICSL), Department of Radiology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4165089PMC
http://dx.doi.org/10.1007/978-3-642-40763-5_10DOI Listing
April 2014

Logical circularity in voxel-based analysis: normalization strategy may induce statistical bias.

Hum Brain Mapp 2014 Mar 14;35(3):745-59. Epub 2012 Nov 14.

Department of Radiology and Medical Imaging, University of Virginia, Charlottesville, Virginia.

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http://dx.doi.org/10.1002/hbm.22211DOI Listing
March 2014

A generative model for OCT retinal layer segmentation by integrating graph-based multi-surface searching and image registration.

Med Image Comput Comput Assist Interv 2013 ;16(Pt 1):428-35

Penn Image Computing and Science Laboratory (PICSL), Department of Radiology, University of Pennsylvania, Philadelphia, PA, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4165088PMC
http://dx.doi.org/10.1007/978-3-642-40811-3_54DOI Listing
February 2014

Histology-derived volumetric annotation of the human hippocampal subfields in postmortem MRI.

Neuroimage 2014 Jan 12;84:505-23. Epub 2013 Sep 12.

Penn Image Computing and Science Laboratory (PICSL), Department of Radiology, University of Pennsylvania, 3600 Market Street, Suite 370, Philadelphia, PA 19104, USA; Department of Bioengineering, University of Pennsylvania, USA. Electronic address:

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http://dx.doi.org/10.1016/j.neuroimage.2013.08.067DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3864597PMC
January 2014

White matter disease correlates with lexical retrieval deficits in primary progressive aphasia.

Front Neurol 2013 27;4:212. Epub 2013 Dec 27.

Department of Neurology, Penn Frontotemporal Degeneration Center, University of Pennsylvania Perelman School of Medicine , Philadelphia, PA , USA.

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http://journal.frontiersin.org/article/10.3389/fneur.2013.00
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http://dx.doi.org/10.3389/fneur.2013.00212DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3873600PMC
January 2014

Manganese-enhanced magnetic resonance imaging (MEMRI) reveals brain circuitry involved in responding to an acute novel stress in rats with a history of repeated social stress.

Physiol Behav 2013 Oct 2;122:228-36. Epub 2013 May 2.

Department of Anesthesiology and Critical Care Medicine, Children's Hospital of Philadelphia, Philadelphia, PA 19104, United States; Department of Psychology and Neuroscience Program, Temple University, Philadelphia, PA 19122, United States. Electronic address:

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http://dx.doi.org/10.1016/j.physbeh.2013.04.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3789851PMC
October 2013

Development and validation of a semiquantitative brain maturation score on fetal MR images: initial results.

Radiology 2013 Jul 25;268(1):200-7. Epub 2013 Feb 25.

Department of Radiology, Children's Hospital of Philadelphia, 324 S 34th St, Wood 2115, Philadelphia, PA 19004, USA.

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http://dx.doi.org/10.1148/radiol.13111715DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3689448PMC
July 2013

A digital atlas of the dog brain.

PLoS One 2012 20;7(12):e52140. Epub 2012 Dec 20.

Department of Neurology, School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0052140PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3527386PMC
June 2013

Single-image vignetting correction from gradient distribution symmetries.

IEEE Trans Pattern Anal Mach Intell 2013 Jun;35(6):1480-94

Department of Radiology, University of Pennsylvania, 3600 Market St., Suite 370, Philadelphia, PA 19104-2644, USA.

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http://dx.doi.org/10.1109/TPAMI.2012.210DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4172430PMC
June 2013

Methodological considerations in longitudinal morphometry of traumatic brain injury.

Front Hum Neurosci 2013 26;7:52. Epub 2013 Feb 26.

Moss Rehabilitation Research Institute Elkins Park, PA, USA.

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http://dx.doi.org/10.3389/fnhum.2013.00052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3581852PMC
April 2013

Eigenanatomy improves detection power for longitudinal cortical change.

Med Image Comput Comput Assist Interv 2012 ;15(Pt 3):206-13

Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3653970PMC
http://dx.doi.org/10.1007/978-3-642-33454-2_26DOI Listing
January 2013

RECONSTRUCTION OF THE HUMAN HIPPOCAMPUS IN 3D FROM HISTOLOGY AND HIGH-RESOLUTION EX-VIVO MRI.

Proc IEEE Int Symp Biomed Imaging 2012 Dec;2012:294-297

Penn Image Computing and Science Laboratory, Department of Radiology, University of Pennsylvania, Philadelphia, PA, USA.

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http://dx.doi.org/10.1109/ISBI.2012.6235542DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3892900PMC
December 2012

A comparative study of HRCT image metrics and PFT values for characterization of ILD and COPD.

Acad Radiol 2012 Jul 18;19(7):857-64. Epub 2012 Apr 18.

Penn Image Computing and Science Laboratory, University of Pennsylvania School of Medicine, 3600 Market Street, Suite 370, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1016/j.acra.2012.03.007DOI Listing
July 2012

A diffusion tensor brain template for rhesus macaques.

Neuroimage 2012 Jan 26;59(1):306-18. Epub 2011 Jul 26.

Waisman Laboratory for Brain Imaging and Behavior, Department of Psychiatry, University of Wisconsin-Madison, Madison, WI, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2011.07.029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3195880PMC
January 2012

An open source multivariate framework for n-tissue segmentation with evaluation on public data.

Neuroinformatics 2011 Dec;9(4):381-400

Penn Image Computing and Science Laboratory, University of Pennsylvania, 3600 Market Street, Suite 370, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1007/s12021-011-9109-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3297199PMC
December 2011

Ventilation-based segmentation of the lungs using hyperpolarized (3)He MRI.

J Magn Reson Imaging 2011 Oct 11;34(4):831-41. Epub 2011 Aug 11.

Department of Radiology and Medical Imaging, University of Virginia, Charlottesville, Virginia, USA.

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http://doi.wiley.com/10.1002/jmri.22738
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http://dx.doi.org/10.1002/jmri.22738DOI Listing
October 2011

Computational analysis of thoracic multidetector row HRCT for segmentation and quantification of small airway air trapping and emphysema in obstructive pulmonary disease.

Acad Radiol 2011 Oct;18(10):1258-69

Department of Radiology, Hospital of the University of Pennsylvania, University of Pennsylvania School of Medicine, Philadelphia, 19104, USA.

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http://dx.doi.org/10.1016/j.acra.2011.06.004DOI Listing
October 2011

Resolving axon fiber crossings at clinical b-values: an evaluation study.

Med Phys 2011 Sep;38(9):5239-53

Department of Mathematics, University of Guanajuato, Mineral de Valenciana Guanajuato, Mexico.

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http://doi.wiley.com/10.1118/1.3626571
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http://dx.doi.org/10.1118/1.3626571DOI Listing
September 2011

Landmark matching based automatic retinal image registration with linear programming and self-similarities.

Inf Process Med Imaging 2011 ;22:674-85

PICSL, Department of Radiology, University of Pennsylvania, Philadelphia, PA, USA.

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http://dx.doi.org/10.1007/978-3-642-22092-0_55DOI Listing
August 2011

Pulmonary kinematics from image data: a review.

Acad Radiol 2011 Apr;18(4):402-17

Department of Radiology and Medical Imaging, University of Virginia, USA.

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http://dx.doi.org/10.1016/j.acra.2010.10.019DOI Listing
April 2011

A nonconservative Lagrangian framework for statistical fluid registration-SAFIRA.

IEEE Trans Med Imaging 2011 Feb 2;30(2):184-202. Epub 2010 Sep 2.

Laboratory of Neuro Imaging, UCLA School of Medicine, Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.1109/TMI.2010.2067451DOI Listing
February 2011

A reproducible evaluation of ANTs similarity metric performance in brain image registration.

Neuroimage 2011 Feb 17;54(3):2033-44. Epub 2010 Sep 17.

Penn Image Computing and Science Laboratory, University of Pennsylvania, Philadelphia, PA 19104, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S105381191001206
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http://dx.doi.org/10.1016/j.neuroimage.2010.09.025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3065962PMC
February 2011

Point set registration using Havrda-Charvat-Tsallis entropy measures.

IEEE Trans Med Imaging 2011 Feb 11;30(2):451-60. Epub 2010 Oct 11.

University of Virginia, Radiology, Charlottesville, VA 22903, USA.

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http://dx.doi.org/10.1109/TMI.2010.2086065DOI Listing
February 2011

STRUCTURAL CONNECTIVITY VIA THE TENSOR-BASED MORPHOMETRY.

Proc IEEE Int Symp Biomed Imaging 2011

Department of Brain and Cognitive Sciences, Seoul National University, Korea.

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http://dx.doi.org/10.1109/ISBI.2011.5872528DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3811040PMC
January 2011

Sparse unbiased analysis of anatomical variance in longitudinal imaging.

Med Image Comput Comput Assist Interv 2010 ;13(Pt 1):324-31

Dept. of Radiology, University of Pennsylvania, Philadelphia, PA 19104-6389 USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3641640PMC
http://dx.doi.org/10.1007/978-3-642-15705-9_40DOI Listing
November 2010

Relating structural and functional connectivity to performance in a communication task.

Med Image Comput Comput Assist Interv 2010 ;13(Pt 2):282-9

Department of Bioengineering, University of Pennsylvania, USA.

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http://dx.doi.org/10.1007/978-3-642-15745-5_35DOI Listing
November 2010

A tract-specific framework for white matter morphometry combining macroscopic and microscopic tract features.

Med Image Anal 2010 Oct 26;14(5):666-73. Epub 2010 May 26.

Penn Image Computing and Science Laboratory (PICSL), Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S136184151000047
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http://dx.doi.org/10.1016/j.media.2010.05.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2910320PMC
October 2010

Gender differences in cerebral cortical folding: multivariate complexity-shape analysis with insights into handling brain-volume differences.

Med Image Comput Comput Assist Interv 2009 ;12(Pt 2):200-7

Penn Image Computing and Science Lab, University of Pennsylvania, USA.

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http://dx.doi.org/10.1007/978-3-642-04271-3_25DOI Listing
June 2010

Tensor-based morphometry of fibrous structures with application to human brain white matter.

Med Image Comput Comput Assist Interv 2009 ;12(Pt 2):466-73

Penn Image Computing and Science Laboratory, Department of Radiology, University of Pennsylvania, USA.

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http://dx.doi.org/10.1007/978-3-642-04271-3_57DOI Listing
June 2010

Automatic correction of intensity nonuniformity from sparseness of gradient distribution in medical images.

Med Image Comput Comput Assist Interv 2009 ;12(Pt 2):852-9

Penn Image Computing and Science Laboratory, Department of Radiology, University of Pennsylvania School of Medicine, Philadelphia, PA, USA.

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http://dx.doi.org/10.1007/978-3-642-04271-3_103DOI Listing
June 2010

N4ITK: improved N3 bias correction.

IEEE Trans Med Imaging 2010 Jun 8;29(6):1310-20. Epub 2010 Apr 8.

Department of Radiology, University of Pennsylvania, Philadelphia, PA 19140, USA.

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http://dx.doi.org/10.1109/TMI.2010.2046908DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3071855PMC
June 2010

Feature analysis of hyperpolarized helium-3 pulmonary MRI: a study of asthmatics versus nonasthmatics.

Magn Reson Med 2010 Jun;63(6):1448-55

Penn Image Computing and Science Laboratory, Department of Radiology, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.

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http://dx.doi.org/10.1002/mrm.22390DOI Listing
June 2010

Evaluation of volume-based and surface-based brain image registration methods.

Neuroimage 2010 May 1;51(1):214-20. Epub 2010 Feb 1.

New York State Psychiatric Institute, Columbia University, NY, NY 10032, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2010.01.091DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2862732PMC
May 2010

Pulmonary kinematics from tagged hyperpolarized helium-3 MRI.

J Magn Reson Imaging 2010 May;31(5):1236-41

Penn Image Computing and Science Laboratory, University of Pennsylvania, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1002/jmri.22137DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2997045PMC
May 2010

Advances in collision detection and non-linear finite mixed element modelling for improved soft tissue simulation in craniomaxillofacial surgical planning.

Int J Med Robot 2010 Mar;6(1):28-41

Department of Automation, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China.

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http://doi.wiley.com/10.1002/rcs.286
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March 2010

The optimal template effect in hippocampus studies of diseased populations.

Neuroimage 2010 Feb 8;49(3):2457-66. Epub 2009 Oct 8.

Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2009.09.062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2818274PMC
February 2010

Morphometric analysis of brain images with reduced number of statistical tests: a study on the gender-related differentiation of the corpus callosum.

Artif Intell Med 2009 Sep 25;47(1):75-86. Epub 2009 Jun 25.

Data Engineering Laboratory (DEnLab), Center for Information Science and Technology, Temple University, Philadelphia, PA 19122, USA.

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http://dx.doi.org/10.1016/j.artmed.2009.05.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2732126PMC
September 2009

A new information-theoretic measure to control the robustness-sensitivity trade-off for DMFFD point-set registration.

Inf Process Med Imaging 2009 ;21:215-26

University of Pennsylvania, Penn Image Computing and Science Laboratory, USA.

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http://dx.doi.org/10.1007/978-3-642-02498-6_18DOI Listing
September 2009

Multivariate high-dimensional cortical folding analysis, combining complexity and shape, in neonates with congenital heart disease.

Inf Process Med Imaging 2009 ;21:552-63

Penn Image Computing and Science Lab (PICSL), University of Pennsylvania, USA.

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http://dx.doi.org/10.1007/978-3-642-02498-6_46DOI Listing
September 2009

Appearance and incomplete label matching for diffeomorphic template based hippocampus segmentation.

Hippocampus 2009 Jun;19(6):565-71

Department of Radiology, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.

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http://dx.doi.org/10.1002/hipo.20619DOI Listing
June 2009

Registration based cortical thickness measurement.

Neuroimage 2009 Apr 25;45(3):867-79. Epub 2008 Dec 25.

Department of Radiology, University of Pennsylvania School of Medicine, Philadelphia, PA, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2008.12.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2836782PMC
April 2009

Directly manipulated free-form deformation image registration.

IEEE Trans Image Process 2009 Mar 20;18(3):624-35. Epub 2009 Jan 20.

Penn Image Computing and Science Lab, Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104-2644, USA.

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March 2009