Publications by authors named "James Briggs"

92Publications

Implementing a system for the real-time risk assessment of patients considered for intensive care.

BMC Med Inform Decis Mak 2020 07 16;20(1):161. Epub 2020 Jul 16.

Nuffield Department of Clinical Neurosciences, University of Oxford, John Radcliffe Hospital, Headley Way, Oxford, OX3 9DU, UK.

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http://dx.doi.org/10.1186/s12911-020-01176-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7366315PMC
July 2020

Forget the stress: retrograde amnesia for the stress-induced impairment of extinction retrieval.

Learn Mem 2020 May 15;27(5):173-176. Epub 2020 Apr 15.

Department of Psychology, Susquehanna University, Selinsgrove, Pennsylvania 17870, USA.

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http://dx.doi.org/10.1101/lm.051078.119DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7164512PMC
May 2020

Impact of lymphoma-linked Asn11Tyr point mutation on the interaction between Bcl-2 and a BH3 mimetic: Insights from molecular dynamics simulation.

Chem Biol Drug Des 2020 Apr 6;95(4):435-450. Epub 2020 Feb 6.

Department of Biology and Biochemistry, University of Houston, Houston, TX, USA.

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http://dx.doi.org/10.1111/cbdd.13653DOI Listing
April 2020

RNAdemocracy: an ensemble method for RNA secondary structure prediction using consensus scoring.

Comput Biol Chem 2019 Dec 4;83:107151. Epub 2019 Nov 4.

University of Houston, University of Houston.

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http://dx.doi.org/10.1016/j.compbiolchem.2019.107151DOI Listing
December 2019

Insights into the substrate binding specificity of quorum-quenching acylase PvdQ.

J Mol Graph Model 2019 05 14;88:104-120. Epub 2019 Jan 14.

Department of Biology and Biochemistry, University of Houston, Houston, TX 77204-5001, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jmgm.2019.01.006DOI Listing
May 2019

Immobilization and unbinding investigation of the antigen-antibody complex using theoretical and experimental techniques.

J Mol Graph Model 2019 01 13;86:219-227. Epub 2018 Oct 13.

Grupo de Nanoneurobiofísica, Departamento de Física, Química e Matemática, Universidade Federal de São Carlos, Sorocaba, SP, 18052-780, Brazil.

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https://linkinghub.elsevier.com/retrieve/pii/S10933263183022
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http://dx.doi.org/10.1016/j.jmgm.2018.10.012DOI Listing
January 2019

Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo.

Science 2018 06 26;360(6392):981-987. Epub 2018 Apr 26.

Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA.

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http://dx.doi.org/10.1126/science.aar4362DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6083445PMC
June 2018

The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution.

Science 2018 06 26;360(6392). Epub 2018 Apr 26.

Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA.

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http://dx.doi.org/10.1126/science.aar5780DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6038144PMC
June 2018

Mouse embryonic stem cells can differentiate via multiple paths to the same state.

Elife 2017 10 9;6. Epub 2017 Oct 9.

Department of Systems Biology, Harvard Medical School, Boston, United States.

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http://dx.doi.org/10.7554/eLife.26945DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5648529PMC
October 2017

FANTOM5 CAGE profiles of human and mouse samples.

Authors:
Shuhei Noguchi Takahiro Arakawa Shiro Fukuda Masaaki Furuno Akira Hasegawa Fumi Hori Sachi Ishikawa-Kato Kaoru Kaida Ai Kaiho Mutsumi Kanamori-Katayama Tsugumi Kawashima Miki Kojima Atsutaka Kubosaki Ri-Ichiroh Manabe Mitsuyoshi Murata Sayaka Nagao-Sato Kenichi Nakazato Noriko Ninomiya Hiromi Nishiyori-Sueki Shohei Noma Eri Saijyo Akiko Saka Mizuho Sakai Christophe Simon Naoko Suzuki Michihira Tagami Shoko Watanabe Shigehiro Yoshida Peter Arner Richard A Axton Magda Babina J Kenneth Baillie Timothy C Barnett Anthony G Beckhouse Antje Blumenthal Beatrice Bodega Alessandro Bonetti James Briggs Frank Brombacher Ailsa J Carlisle Hans C Clevers Carrie A Davis Michael Detmar Taeko Dohi Albert S B Edge Matthias Edinger Anna Ehrlund Karl Ekwall Mitsuhiro Endoh Hideki Enomoto Afsaneh Eslami Michela Fagiolini Lynsey Fairbairn Mary C Farach-Carson Geoffrey J Faulkner Carmelo Ferrai Malcolm E Fisher Lesley M Forrester Rie Fujita Jun-Ichi Furusawa Teunis B Geijtenbeek Thomas Gingeras Daniel Goldowitz Sven Guhl Reto Guler Stefano Gustincich Thomas J Ha Masahide Hamaguchi Mitsuko Hara Yuki Hasegawa Meenhard Herlyn Peter Heutink Kelly J Hitchens David A Hume Tomokatsu Ikawa Yuri Ishizu Chieko Kai Hiroshi Kawamoto Yuki I Kawamura Judith S Kempfle Tony J Kenna Juha Kere Levon M Khachigian Toshio Kitamura Sarah Klein S Peter Klinken Alan J Knox Soichi Kojima Haruhiko Koseki Shigeo Koyasu Weonju Lee Andreas Lennartsson Alan Mackay-Sim Niklas Mejhert Yosuke Mizuno Hiromasa Morikawa Mitsuru Morimoto Kazuyo Moro Kelly J Morris Hozumi Motohashi Christine L Mummery Yutaka Nakachi Fumio Nakahara Toshiyuki Nakamura Yukio Nakamura Tadasuke Nozaki Soichi Ogishima Naganari Ohkura Hiroshi Ohno Mitsuhiro Ohshima Mariko Okada-Hatakeyama Yasushi Okazaki Valerio Orlando Dmitry A Ovchinnikov Robert Passier Margaret Patrikakis Ana Pombo Swati Pradhan-Bhatt Xian-Yang Qin Michael Rehli Patrizia Rizzu Sugata Roy Antti Sajantila Shimon Sakaguchi Hiroki Sato Hironori Satoh Suzana Savvi Alka Saxena Christian Schmidl Claudio Schneider Gundula G Schulze-Tanzil Anita Schwegmann Guojun Sheng Jay W Shin Daisuke Sugiyama Takaaki Sugiyama Kim M Summers Naoko Takahashi Jun Takai Hiroshi Tanaka Hideki Tatsukawa Andru Tomoiu Hiroo Toyoda Marc van de Wetering Linda M van den Berg Roberto Verardo Dipti Vijayan Christine A Wells Louise N Winteringham Ernst Wolvetang Yoko Yamaguchi Masayuki Yamamoto Chiyo Yanagi-Mizuochi Misako Yoneda Yohei Yonekura Peter G Zhang Silvia Zucchelli Imad Abugessaisa Erik Arner Jayson Harshbarger Atsushi Kondo Timo Lassmann Marina Lizio Serkan Sahin Thierry Sengstag Jessica Severin Hisashi Shimoji Masanori Suzuki Harukazu Suzuki Jun Kawai Naoto Kondo Masayoshi Itoh Carsten O Daub Takeya Kasukawa Hideya Kawaji Piero Carninci Alistair R R Forrest Yoshihide Hayashizaki

Sci Data 2017 08 29;4:170112. Epub 2017 Aug 29.

RIKEN Omics Science Center, Yokohama, Kanagawa 230-0045, Japan.

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http://dx.doi.org/10.1038/sdata.2017.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5574368PMC
August 2017

Characteristics of retrograde amnesia for CS preexposure.

Learn Behav 2017 09;45(3):243-251

Department of Psychology, Susquehanna University, Selinsgrove, PA, 17870, USA.

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http://link.springer.com/10.3758/s13420-017-0259-0
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http://dx.doi.org/10.3758/s13420-017-0259-0DOI Listing
September 2017

Structural mutation analysis of PTEN and its genotype-phenotype correlations in endometriosis and cancer.

Proteins 2016 11 13;84(11):1625-1643. Epub 2016 Aug 13.

Department of Biology and Biochemistry, University of Houston, Houston, Texas, 77204-5001.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5073044PMC
http://dx.doi.org/10.1002/prot.25105DOI Listing
November 2016

Functional Implications of the spectrum of BCL2 mutations in Lymphoma.

Mutat Res Rev Mutat Res 2016 Jul-Sep;769:1-18. Epub 2016 Jun 16.

Department of Biology and Biochemistry, University of Houston, Houston, TX 77204-5001, USA. Electronic address:

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http://dx.doi.org/10.1016/j.mrrev.2016.06.001DOI Listing
July 2017

Immediate Extinction Attenuates Spontaneous Recovery and Reinstatement in a Passive Avoidance Paradigm.

Percept Mot Skills 2016 Aug 15;123(1):5-16. Epub 2016 Jun 15.

Department of Psychological Science, Saint Vincent College, Latrobe, PA, USA.

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http://dx.doi.org/10.1177/0031512516654464DOI Listing
August 2016

Management of iatrogenic ureteric injury with retrograde ureteric stenting: an analysis of factors affecting technical success and long-term outcome.

Acta Radiol 2017 Feb 20;58(2):170-175. Epub 2016 Jul 20.

Oxford University Hospital NHS Foundation Trust, Oxford, UK.

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http://dx.doi.org/10.1177/0284185116638568DOI Listing
February 2017

Mechanisms of Long Non-coding RNAs in Mammalian Nervous System Development, Plasticity, Disease, and Evolution.

Neuron 2015 Dec;88(5):861-877

Garvan Institute of Medical Research, Sydney, NSW 2010, Australia; St. Vincent's Clinical School and School of Biotechnology and Biomolecular Sciences, University of New South Wales, Kensington, NSW 2052, Australia.

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http://dx.doi.org/10.1016/j.neuron.2015.09.045DOI Listing
December 2015

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.

Authors:
Erik Arner Carsten O Daub Kristoffer Vitting-Seerup Robin Andersson Berit Lilje Finn Drabløs Andreas Lennartsson Michelle Rönnerblad Olga Hrydziuszko Morana Vitezic Tom C Freeman Ahmad M N Alhendi Peter Arner Richard Axton J Kenneth Baillie Anthony Beckhouse Beatrice Bodega James Briggs Frank Brombacher Margaret Davis Michael Detmar Anna Ehrlund Mitsuhiro Endoh Afsaneh Eslami Michela Fagiolini Lynsey Fairbairn Geoffrey J Faulkner Carmelo Ferrai Malcolm E Fisher Lesley Forrester Daniel Goldowitz Reto Guler Thomas Ha Mitsuko Hara Meenhard Herlyn Tomokatsu Ikawa Chieko Kai Hiroshi Kawamoto Levon M Khachigian S Peter Klinken Soichi Kojima Haruhiko Koseki Sarah Klein Niklas Mejhert Ken Miyaguchi Yosuke Mizuno Mitsuru Morimoto Kelly J Morris Christine Mummery Yutaka Nakachi Soichi Ogishima Mariko Okada-Hatakeyama Yasushi Okazaki Valerio Orlando Dmitry Ovchinnikov Robert Passier Margaret Patrikakis Ana Pombo Xian-Yang Qin Sugata Roy Hiroki Sato Suzana Savvi Alka Saxena Anita Schwegmann Daisuke Sugiyama Rolf Swoboda Hiroshi Tanaka Andru Tomoiu Louise N Winteringham Ernst Wolvetang Chiyo Yanagi-Mizuochi Misako Yoneda Susan Zabierowski Peter Zhang Imad Abugessaisa Nicolas Bertin Alexander D Diehl Shiro Fukuda Masaaki Furuno Jayson Harshbarger Akira Hasegawa Fumi Hori Sachi Ishikawa-Kato Yuri Ishizu Masayoshi Itoh Tsugumi Kawashima Miki Kojima Naoto Kondo Marina Lizio Terrence F Meehan Christopher J Mungall Mitsuyoshi Murata Hiromi Nishiyori-Sueki Serkan Sahin Sayaka Nagao-Sato Jessica Severin Michiel J L de Hoon Jun Kawai Takeya Kasukawa Timo Lassmann Harukazu Suzuki Hideya Kawaji Kim M Summers Christine Wells David A Hume Alistair R R Forrest Albin Sandelin Piero Carninci Yoshihide Hayashizaki

Science 2015 Feb 12;347(6225):1010-4. Epub 2015 Feb 12.

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http://dx.doi.org/10.1126/science.1259418DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4681433PMC
February 2015

Biophysical characteristics of cholera toxin and Escherichia coli heat-labile enterotoxin structure and chemistry lead to differential toxicity.

J Phys Chem B 2015 Jan 5;119(3):1048-61. Epub 2014 Nov 5.

Department of Biology and Biochemistry, University of Houston , 4800 Calhoun Road, Houston, Texas 77204-5001, United States.

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http://pubs.acs.org/doi/10.1021/jp506509c
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http://dx.doi.org/10.1021/jp506509cDOI Listing
January 2015

Transient small bowel intussusception in adults: an overlooked feature of coeliac disease.

BMJ Case Rep 2014 Jun 20;2014. Epub 2014 Jun 20.

Department of Radiology, Oxford University Hospitals NHS Trust, Oxford, UK.

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http://dx.doi.org/10.1136/bcr-2013-203156DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4069788PMC
June 2014

Retrograde transileal conduit stent placement for obstructed uropathy--success of primary and exchange stent placement.

J Vasc Interv Radiol 2014 Aug 1;25(8):1250-6. Epub 2014 Apr 1.

Department of Radiology, Oxford University Hospitals, Churchill Hospital, Headington, Oxford, United Kingdom.

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https://linkinghub.elsevier.com/retrieve/pii/S10510443140022
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http://dx.doi.org/10.1016/j.jvir.2014.02.013DOI Listing
August 2014

A promoter-level mammalian expression atlas.

Authors:
Alistair R R Forrest Hideya Kawaji Michael Rehli J Kenneth Baillie Michiel J L de Hoon Vanja Haberle Timo Lassmann Ivan V Kulakovskiy Marina Lizio Masayoshi Itoh Robin Andersson Christopher J Mungall Terrence F Meehan Sebastian Schmeier Nicolas Bertin Mette Jørgensen Emmanuel Dimont Erik Arner Christian Schmidl Ulf Schaefer Yulia A Medvedeva Charles Plessy Morana Vitezic Jessica Severin Colin A Semple Yuri Ishizu Robert S Young Margherita Francescatto Intikhab Alam Davide Albanese Gabriel M Altschuler Takahiro Arakawa John A C Archer Peter Arner Magda Babina Sarah Rennie Piotr J Balwierz Anthony G Beckhouse Swati Pradhan-Bhatt Judith A Blake Antje Blumenthal Beatrice Bodega Alessandro Bonetti James Briggs Frank Brombacher A Maxwell Burroughs Andrea Califano Carlo V Cannistraci Daniel Carbajo Yun Chen Marco Chierici Yari Ciani Hans C Clevers Emiliano Dalla Carrie A Davis Michael Detmar Alexander D Diehl Taeko Dohi Finn Drabløs Albert S B Edge Matthias Edinger Karl Ekwall Mitsuhiro Endoh Hideki Enomoto Michela Fagiolini Lynsey Fairbairn Hai Fang Mary C Farach-Carson Geoffrey J Faulkner Alexander V Favorov Malcolm E Fisher Martin C Frith Rie Fujita Shiro Fukuda Cesare Furlanello Masaaki Furino Jun-ichi Furusawa Teunis B Geijtenbeek Andrew P Gibson Thomas Gingeras Daniel Goldowitz Julian Gough Sven Guhl Reto Guler Stefano Gustincich Thomas J Ha Masahide Hamaguchi Mitsuko Hara Matthias Harbers Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Takehiro Hashimoto Meenhard Herlyn Kelly J Hitchens Shannan J Ho Sui Oliver M Hofmann Ilka Hoof Furni Hori Lukasz Huminiecki Kei Iida Tomokatsu Ikawa Boris R Jankovic Hui Jia Anagha Joshi Giuseppe Jurman Bogumil Kaczkowski Chieko Kai Kaoru Kaida Ai Kaiho Kazuhiro Kajiyama Mutsumi Kanamori-Katayama Artem S Kasianov Takeya Kasukawa Shintaro Katayama Sachi Kato Shuji Kawaguchi Hiroshi Kawamoto Yuki I Kawamura Tsugumi Kawashima Judith S Kempfle Tony J Kenna Juha Kere Levon M Khachigian Toshio Kitamura S Peter Klinken Alan J Knox Miki Kojima Soichi Kojima Naoto Kondo Haruhiko Koseki Shigeo Koyasu Sarah Krampitz Atsutaka Kubosaki Andrew T Kwon Jeroen F J Laros Weonju Lee Andreas Lennartsson Kang Li Berit Lilje Leonard Lipovich Alan Mackay-Sim Ri-ichiroh Manabe Jessica C Mar Benoit Marchand Anthony Mathelier Niklas Mejhert Alison Meynert Yosuke Mizuno David A de Lima Morais Hiromasa Morikawa Mitsuru Morimoto Kazuyo Moro Efthymios Motakis Hozumi Motohashi Christine L Mummery Mitsuyoshi Murata Sayaka Nagao-Sato Yutaka Nakachi Fumio Nakahara Toshiyuki Nakamura Yukio Nakamura Kenichi Nakazato Erik van Nimwegen Noriko Ninomiya Hiromi Nishiyori Shohei Noma Shohei Noma Tadasuke Noazaki Soichi Ogishima Naganari Ohkura Hiroko Ohimiya Hiroshi Ohno Mitsuhiro Ohshima Mariko Okada-Hatakeyama Yasushi Okazaki Valerio Orlando Dmitry A Ovchinnikov Arnab Pain Robert Passier Margaret Patrikakis Helena Persson Silvano Piazza James G D Prendergast Owen J L Rackham Jordan A Ramilowski Mamoon Rashid Timothy Ravasi Patrizia Rizzu Marco Roncador Sugata Roy Morten B Rye Eri Saijyo Antti Sajantila Akiko Saka Shimon Sakaguchi Mizuho Sakai Hiroki Sato Suzana Savvi Alka Saxena Claudio Schneider Erik A Schultes Gundula G Schulze-Tanzil Anita Schwegmann Thierry Sengstag Guojun Sheng Hisashi Shimoji Yishai Shimoni Jay W Shin Christophe Simon Daisuke Sugiyama Takaai Sugiyama Masanori Suzuki Naoko Suzuki Rolf K Swoboda Peter A C 't Hoen Michihira Tagami Naoko Takahashi Jun Takai Hiroshi Tanaka Hideki Tatsukawa Zuotian Tatum Mark Thompson Hiroo Toyodo Tetsuro Toyoda Elvind Valen Marc van de Wetering Linda M van den Berg Roberto Verado Dipti Vijayan Ilya E Vorontsov Wyeth W Wasserman Shoko Watanabe Christine A Wells Louise N Winteringham Ernst Wolvetang Emily J Wood Yoko Yamaguchi Masayuki Yamamoto Misako Yoneda Yohei Yonekura Shigehiro Yoshida Susan E Zabierowski Peter G Zhang Xiaobei Zhao Silvia Zucchelli Kim M Summers Harukazu Suzuki Carsten O Daub Jun Kawai Peter Heutink Winston Hide Tom C Freeman Boris Lenhard Vladimir B Bajic Martin S Taylor Vsevolod J Makeev Albin Sandelin David A Hume Piero Carninci Yoshihide Hayashizaki

Nature 2014 Mar;507(7493):462-70

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http://dx.doi.org/10.1038/nature13182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4529748PMC
March 2014

Decision-tree early warning score (DTEWS) validates the design of the National Early Warning Score (NEWS).

Resuscitation 2014 Mar 19;85(3):418-23. Epub 2013 Dec 19.

School of Health and Social Care, University of Bournemouth, Bournemouth, UK. Electronic address:

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http://dx.doi.org/10.1016/j.resuscitation.2013.12.011DOI Listing
March 2014

Associations between the Rho kinase-1 catalytic and PH domain regulatory unit.

J Mol Graph Model 2013 Nov 4;46:74-82. Epub 2013 Oct 4.

Department of Biology and Biochemistry, University of Houston, Houston, TX 77204, USA.

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http://dx.doi.org/10.1016/j.jmgm.2013.09.009DOI Listing
November 2013

New insights into the binding and catalytic mechanisms of Bacillus thuringiensis lactonase: insights into B. thuringiensis AiiA mechanism.

PLoS One 2013 18;8(9):e75395. Epub 2013 Sep 18.

Department of Biology and Biochemistry, University of Houston, Houston, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0075395PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3776789PMC
September 2014

Molecular modeling of enzyme attachment on AFM probes.

J Mol Graph Model 2013 Sep 16;45:128-36. Epub 2013 Aug 16.

Chemistry Department, Federal University of São Carlos, 13565-905 São Carlos, SP, Brazil. Electronic address:

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http://dx.doi.org/10.1016/j.jmgm.2013.08.007DOI Listing
September 2013

Interactions of acetylcholine binding site residues contributing to nicotinic acetylcholine receptor gating: role of residues Y93, Y190, K145 and D200.

J Mol Graph Model 2013 Jul 15;44:145-54. Epub 2013 Jun 15.

Department of Biology and Biochemistry, University of Houston, Houston, TX 77204, USA.

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http://dx.doi.org/10.1016/j.jmgm.2013.05.010DOI Listing
July 2013

Reexposure to the amnestic agent alleviates cycloheximide-induced retrograde amnesia for reactivated and extinction memories.

Learn Mem 2013 Apr 17;20(5):285-8. Epub 2013 Apr 17.

Department of Psychology, Susquehanna University, Selinsgrove, PA 17870, USA.

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http://learnmem.cshlp.org/content/20/5/285.full.pdf
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http://learnmem.cshlp.org/cgi/doi/10.1101/lm.030270.113
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http://dx.doi.org/10.1101/lm.030270.113DOI Listing
April 2013

Direct percutaneous puncture and embolization of ruptured sinus of valsalva aneurysm.

Cardiovasc Intervent Radiol 2014 Feb 13;37(1):278-80. Epub 2013 Mar 13.

Oxford University Hospitals NHS Trust, Oxford, UK,

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http://dx.doi.org/10.1007/s00270-013-0596-0DOI Listing
February 2014

Concise review: new paradigms for Down syndrome research using induced pluripotent stem cells: tackling complex human genetic disease.

Stem Cells Transl Med 2013 Mar 14;2(3):175-84. Epub 2013 Feb 14.

Australian Institute for Bioengineering and Nanotechnology, University of Queensland, St Lucia, Queensland, Australia.

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http://dx.doi.org/10.5966/sctm.2012-0117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3659762PMC
March 2013

Hypertrophic inferior phrenic artery embolization.

J Vasc Interv Radiol 2012 Sep 24;23(9):1187. Epub 2012 Jul 24.

Department of Radiology, John Radcliffe Hospital, Oxford University Hospitals Trust, Oxford OX3 9DU, UK.

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http://dx.doi.org/10.1016/j.jvir.2012.06.004DOI Listing
September 2012

Pharmacophore-based virtual screening to aid in the identification of unknown protein function.

Chem Biol Drug Des 2012 Dec 11;80(6):828-42. Epub 2012 Oct 11.

Department of Biology and Biochemistry, University of Houston, Houston, TX 77204-5001, USA.

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http://dx.doi.org/10.1111/j.1747-0285.2012.01408.xDOI Listing
December 2012

How important is theory in health informatics? A survey of UK academics.

Stud Health Technol Inform 2011 ;169:223-7

Centre for Healthcare Modelling and Informatics, University of Portsmouth, UK.

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December 2011

Mechanistic role of NS4A and substrate in the activation of HCV NS3 protease.

Proteins 2011 Aug 1;79(8):2428-43. Epub 2011 Jun 1.

Department of Biology and Biochemistry, University of Houston, Houston, Texas 77204-5001, USA.

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http://dx.doi.org/10.1002/prot.23064DOI Listing
August 2011

Nucleophile activation in PD...(D/E)xK metallonucleases: an experimental and computational pK(a) study.

J Inorg Biochem 2010 Jun 6;104(6):665-72. Epub 2010 Mar 6.

Department of Chemistry & Biochemistry and the Center for Nanoscience, University of Missouri St. Louis, St. Louis, MO 63121, United States.

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http://dx.doi.org/10.1016/j.jinorgbio.2010.02.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913505PMC
June 2010

STAT-HI: A socio-technical assessment tool for health informatics implementations.

Open Med Inform J 2010 15;4:214-20. Epub 2010 Sep 15.

Centre for Healthcare Modelling and Informatics, University of Portsmouth, UK.

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http://dx.doi.org/10.2174/1874431101004010214DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3096986PMC
August 2012

Amyloidosis presenting as bilateral transudative pleural effusions with normal cardiac investigations: a case report.

Cases J 2009 Jul 21;2:6963. Epub 2009 Jul 21.

Department of Respiratory Medicine, Heatherwood and Wexham Park Hospitals NHS Foundation Trust, King Edward VII Hospital,Windsor, Berkshire, SL4 3DP, UK.

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http://www.casesjournal.com/content/2/1/6963
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http://dx.doi.org/10.4076/1757-1626-2-6963DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2740277PMC
July 2009

Developing a theoretical model of clinician information usage propensity.

Stud Health Technol Inform 2009 ;150:605-9

Centre for Healthcare Modelling and Informatics, University of Portsmouth, Portsmouth PO1 3HE, UK.

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December 2009

Computational insights into the interaction of the anthrax lethal factor with the N-terminal region of its substrates.

Proteins 2009 May;75(2):323-35

Department of Biology and Biochemistry, University of Houston, Houston, Texas 77204-5001, USA.

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http://doi.wiley.com/10.1002/prot.22241
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http://dx.doi.org/10.1002/prot.22241DOI Listing
May 2009

Molecular dynamics simulations of Factor Xa: insight into conformational transition of its binding subsites.

Biopolymers 2008 Dec;89(12):1104-13

Department of Biology and Biochemistry, University of Houston, Houston, TX 77204-5001, USA.

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http://dx.doi.org/10.1002/bip.21062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5030816PMC
December 2008

A single-residue mutation destabilizes Vibrio harveyi flavin reductase FRP dimer.

Arch Biochem Biophys 2008 Apr 12;472(1):51-7. Epub 2008 Feb 12.

Department of Biology and Biochemistry, University of Houston, 4800 Calhoun, Houston, TX 77204-5001, USA.

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http://dx.doi.org/10.1016/j.abb.2008.02.006DOI Listing
April 2008

Cluster analysis of hydration waters around the active sites of bacterial alanine racemase using a 2-ns MD simulation.

Biopolymers 2008 Mar;89(3):210-9

Department of Systems Biology and Translational Medicine, College of Medicine, TX A&M Health Science Center, Temple, TX 76504, USA.

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http://dx.doi.org/10.1002/bip.20893DOI Listing
March 2008

Retrograde amnesia for extinction: similarities with amnesia for original acquisition memories.

Learn Behav 2007 Aug;35(3):131-40

Kent State University, Kent, Ohio 44242, USA.

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http://dx.doi.org/10.3758/bf03193048DOI Listing
August 2007

Transfer of memory retrieval cues in rats.

Psychon Bull Rev 2007 Jun;14(3):495-9

Department of Psychology, Kent State University, Kent, Ohio 44242, USA.

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http://dx.doi.org/10.3758/bf03194096DOI Listing
June 2007

Hybrid quantum mechanical/molecular mechanical molecular dynamics simulations of HIV-1 integrase/inhibitor complexes.

Biophys J 2007 Nov 10;93(10):3613-26. Epub 2007 Aug 10.

Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok, Thailand.

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http://dx.doi.org/10.1529/biophysj.107.108464DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2072063PMC
November 2007

Dopamine D1 receptor agonist and D2 receptor antagonist effects of the natural product (-)-stepholidine: molecular modeling and dynamics simulations.

Biophys J 2007 Sep 27;93(5):1431-41. Epub 2007 Apr 27.

Drug Discovery and Design Centre, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, PR China.

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http://dx.doi.org/10.1529/biophysj.106.088500DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1948031PMC
September 2007

Modulation of substrate specificity within the amino acid editing site of leucyl-tRNA synthetase.

Biochemistry 2007 Mar 21;46(11):3331-7. Epub 2007 Feb 21.

Department of Biology and Biochemistry, University of Houston, Houston, Texas 77204-5001, USA.

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http://dx.doi.org/10.1021/bi061778lDOI Listing
March 2007

Computed pore potentials of the nicotinic acetylcholine receptor.

Biophys J 2006 Aug 2;91(4):1325-35. Epub 2006 Jun 2.

Department of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, Texas 77035, USA.

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http://dx.doi.org/10.1529/biophysj.106.081455DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1518625PMC
August 2006

Electrostatic steering at acetylcholine binding sites.

Biophys J 2006 Aug 2;91(4):1302-14. Epub 2006 Jun 2.

Department of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, Texas 77030, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S00063495067184
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http://dx.doi.org/10.1529/biophysj.106.081463DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1518644PMC
August 2006

Angiographically confirmed coronary heart disease and periodontal disease in middle-aged males.

J Periodontol 2006 Jan;77(1):95-102

Oral Science Research Centre, School of Dentistry, Queen's University, Belfast, Northern Ireland, UK.

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http://dx.doi.org/10.1902/jop.2006.77.1.95DOI Listing
January 2006

Dynamic pharmacophore model optimization: identification of novel HIV-1 integrase inhibitors.

J Med Chem 2006 Mar;49(5):1684-92

Department of Chemical Engineering, University of Houston, Houston, Texas 77204, USA.

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http://dx.doi.org/10.1021/jm0510629DOI Listing
March 2006

Radioimmunoassay quantification of adrenomedullin in human gingival crevicular fluid.

Arch Oral Biol 2006 Apr 12;51(4):334-8. Epub 2005 Oct 12.

Oral Science Research Centre, School of Dentistry, Queen's University, Grosvenor Road, Belfast, Northern Ireland BT12 6BP, UK.

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http://dx.doi.org/10.1016/j.archoralbio.2005.08.006DOI Listing
April 2006

Nucleotide modification at the gamma-phosphate leads to the improved fidelity of HIV-1 reverse transcriptase.

Nucleic Acids Res 2005 1;33(15):4865-73. Epub 2005 Sep 1.

Department of Biology and Biochemistry, University of Houston Houston, TX 77204-5001, USA.

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http://dx.doi.org/10.1093/nar/gki779DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1197130PMC
September 2005

Comparative molecular dynamics simulations of HIV-1 integrase and the T66I/M154I mutant: binding modes and drug resistance to a diketo acid inhibitor.

Proteins 2005 Jun;59(4):723-41

Dipartimento di Scienze Farmaceutiche, Università degli Studi di Padova, Padova, Italy.

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http://dx.doi.org/10.1002/prot.20447DOI Listing
June 2005

Comparison of multiple molecular dynamics trajectories calculated for the drug-resistant HIV-1 integrase T66I/M154I catalytic domain.

Biophys J 2005 May 11;88(5):3072-82. Epub 2005 Mar 11.

Dipartimento di Scienze Farmaceutiche, Università degli Studi di Padova, 35131 Padova, Italy.

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http://dx.doi.org/10.1529/biophysj.104.050286DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1305459PMC
May 2005

Dynamic receptor-based pharmacophore model development and its application in designing novel HIV-1 integrase inhibitors.

J Med Chem 2005 Mar;48(5):1496-505

Department of Chemical Engineering, University of Houston, Houston, TX 77204-4004, USA.

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http://dx.doi.org/10.1021/jm049410eDOI Listing
March 2005

Large-scale conformational dynamics of the HIV-1 integrase core domain and its catalytic loop mutants.

Biophys J 2005 May 24;88(5):3133-46. Epub 2005 Feb 24.

Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA.

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http://dx.doi.org/10.1529/biophysj.104.058446DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1305464PMC
May 2005

The 1.9 A crystal structure of alanine racemase from Mycobacterium tuberculosis contains a conserved entryway into the active site.

Biochemistry 2005 Feb;44(5):1471-81

Department of Biology and Biochemistry, University of Houston, Houston, Texas 77204-5001, USA.

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http://dx.doi.org/10.1021/bi0486583DOI Listing
February 2005

Efficient 3D database screening for novel HIV-1 IN inhibitors.

J Chem Inf Comput Sci 2004 Jul-Aug;44(4):1450-5

Dipartimento Farmaco-Chimico, Università di Messina, Viale Annunziata, 98168 Messina, Italy.

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http://dx.doi.org/10.1021/ci034296eDOI Listing
December 2005

Effects of ontogeny on performance of rats in a novel object-recognition task.

Psychol Rep 2004 Apr;94(2):437-43

Department of Psychology, Kent State University, Kent, OH 44242, USA.

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http://dx.doi.org/10.2466/pr0.94.2.437-443DOI Listing
April 2004

Cluster analysis of water molecules in alanine racemase and their putative structural role.

Protein Eng Des Sel 2004 Mar 28;17(3):223-34. Epub 2004 Apr 28.

Department of Biology and Biochemistry, University of Houston, Houston, TX 77204-5001, USA.

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https://academic.oup.com/peds/article-lookup/doi/10.1093/pro
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http://dx.doi.org/10.1093/protein/gzh033DOI Listing
March 2004

HIV-1 integrase pharmacophore model derived from diverse classes of inhibitors.

Bioorg Med Chem Lett 2004 Mar;14(6):1447-54

Department of Biology and Biochemistry, University of Houston, Houston, TX 77204-5001, USA.

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http://dx.doi.org/10.1016/j.bmcl.2004.01.027DOI Listing
March 2004

Molecular modeling study of the editing active site of Escherichia coli leucyl-tRNA synthetase: two amino acid binding sites in the editing domain.

Proteins 2004 Mar;54(4):693-704

Department of Biology and Biochemistry, University of Houston, Houston, Texas 77204-5001, USA.

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http://dx.doi.org/10.1002/prot.10300DOI Listing
March 2004

Prediction of HIV-1 integrase/viral DNA interactions in the catalytic domain by fast molecular docking.

J Med Chem 2004 Feb;47(4):821-8

Department of Biology and Biochemistry, Houston Science Center, Room 402D, University of Houston, Houston, Texas 77204-5001, USA.

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http://dx.doi.org/10.1021/jm0301890DOI Listing
February 2004

Molecular dissection of a critical specificity determinant within the amino acid editing domain of leucyl-tRNA synthetase.

Biochemistry 2004 Jan;43(1):155-65

Department of Biology and Biochemistry, University of Houston, Houston, TX 77204-5001, USA.

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http://dx.doi.org/10.1021/bi034919hDOI Listing
January 2004

Molecular dynamics studies of alanine racemase: a structural model for drug design.

Biopolymers 2003 Oct;70(2):186-200

Department of Biology and Biochemistry, University of Houston, Houston, TX 77204-5001, USA.

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http://dx.doi.org/10.1002/bip.10425DOI Listing
October 2003

A structure-based design approach for the identification of novel inhibitors: application to an alanine racemase.

J Comput Aided Mol Des 2002 Dec;16(12):935-53

Department of Biology and Biochemistry, University of Houston, Houston, TX 77204-5001, USA.

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http://dx.doi.org/10.1023/a:1023875514454DOI Listing
December 2002

pK values of histidine residues in ribonuclease Sa: effect of salt and net charge.

J Mol Biol 2003 Jan;325(5):1093-105

Department of Medical Biochemistry and Genetics, Center for Advanced Biomolecular Research, Texas A&M University, College Station, TX 77843-1114, USA.

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http://dx.doi.org/10.1016/s0022-2836(02)01274-3DOI Listing
January 2003

Charge-charge interactions are key determinants of the pK values of ionizable groups in ribonuclease Sa (pI=3.5) and a basic variant (pI=10.2).

J Mol Biol 2003 Jan;325(5):1077-92

Department of Medical Biochemistry and Genetics, Department of Biochemistry and Biophysics, Center for Advanced Biomolecular Research, Texas A&M University, College Station, TX 77843-1114, USA.

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http://dx.doi.org/10.1016/s0022-2836(02)01273-1DOI Listing
January 2003

Charge-charge interactions are the primary determinants of the pK values of the ionizable groups in Ribonuclease T1.

Biophys Chem 2002 Dec;101-102:211-9

Department of Medical Biochemistry and Genetics and Center for Advanced Biomolecular Research, Texas A&M University, College Station, TX 77843-1114, USA.

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http://dx.doi.org/10.1016/s0301-4622(02)00192-8DOI Listing
December 2002

Molecular docking and 3D-QSAR studies on gag peptide analogue inhibitors interacting with human cyclophilin A.

J Med Chem 2002 Nov;45(24):5249-59

Center for Drug Discovery and Design, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Shanghai Institutes of Biological Sciences, Chinese Academy of Sciences, 294 Taiyuan Road, Shanghai 200031, P. R. China.

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http://dx.doi.org/10.1021/jm020082xDOI Listing
November 2002

Brownian dynamics simulations of the recognition of the scorpion toxin maurotoxin with the voltage-gated potassium ion channels.

Biophys J 2002 Nov;83(5):2370-85

Center for Drug Discovery and Design, State Key Laboratory of Drug Research, Shanghai Institute of Meteria Medica, Chinese Academy of Sciences, 194 Taiyuan Road, Shanghai 200031, P. R. China.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1302326PMC
http://dx.doi.org/10.1016/S0006-3495(02)75251-XDOI Listing
November 2002

Brownian dynamics simulations of the recognition of the scorpion toxin P05 with the small-conductance calcium-activated potassium channels.

J Mol Biol 2002 Apr;318(2):417-28

Center for Drug Discovery and Design, State Key Laboratory of Drug Research, Shanghai Institute of Meteria Medica, Shanghai Institutes of Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, People's Republic of China.

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http://dx.doi.org/10.1016/S0022-2836(02)00095-5DOI Listing
April 2002

Thermal changes observed at implant sites during internal and external irrigation.

Clin Oral Implants Res 2002 Jun;13(3):293-7

Division of Restorative Dentistry, School of Dentistry, Queen's University, Belfast, Belfast, Northern Ireland.

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http://dx.doi.org/10.1034/j.1600-0501.2002.130309.xDOI Listing
June 2002

The association between a negatively charged ligand and the electronegative binding pocket of its receptor.

Biopolymers 2002 Apr;63(4):247-60

Department of Biology and Biochemistry, University of Houston, Houston, TX 77204-5513, USA.

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http://dx.doi.org/10.1002/bip.10050DOI Listing
April 2002

Prof. Scarpa's Improved Operation for Aneurism.

Authors:
James Briggs

Lond Med Phys J 1817 May;37(219):377-378

30, Edgeware Road.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5611091PMC
May 1817