Publications by authors named "James Bashkin"

26Publications

Modulating DNA by polyamides to regulate transcription factor PU.1-DNA binding interactions.

Biochimie 2019 Dec 21;167:1-11. Epub 2019 Aug 21.

Department of Chemistry, Georgia State University, Atlanta, GA, 30303, USA. Electronic address:

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http://dx.doi.org/10.1016/j.biochi.2019.08.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6883780PMC
December 2019

DNA binding thermodynamics and site stoichiometry as a function of polyamide size.

Biochimie 2019 Oct 31;165:170-178. Epub 2019 Jul 31.

Department of Chemistry & Biochemistry, University of Missouri St. Louis, St. Louis, MO, 63121, USA. Electronic address:

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http://dx.doi.org/10.1016/j.biochi.2019.07.021DOI Listing
October 2019

Thermodynamics and site stoichiometry of DNA binding by a large antiviral hairpin polyamide.

Biochimie 2019 Feb 24;157:149-157. Epub 2018 Nov 24.

Department of Chemistry & Biochemistry, University of Missouri St. Louis, St. Louis, MO, 63121, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S03009084183033
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http://dx.doi.org/10.1016/j.biochi.2018.11.013DOI Listing
February 2019

A Polyamide Inhibits Replication of Vesicular Stomatitis Virus by Targeting RNA in the Nucleocapsid.

J Virol 2018 04 28;92(8). Epub 2018 Mar 28.

Department of Chemistry, Georgia State University, Atlanta, Georgia, USA

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http://dx.doi.org/10.1128/JVI.00146-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5874401PMC
April 2018

Interactions of two large antiviral polyamides with the long control region of HPV16.

Biochimie 2016 Aug 4;127:103-14. Epub 2016 May 4.

Department of Chemistry & Biochemistry and the Center for Nanoscience, University of Missouri St. Louis, St. Louis, MO 63121, USA. Electronic address:

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http://dx.doi.org/10.1016/j.biochi.2016.04.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4931995PMC
August 2016

What is the antiviral potential of pyrrole-imidazole polyamides?

Future Med Chem 2015 23;7(15):1953-5. Epub 2015 Oct 23.

Department of Chemistry & Biochemistry, Center for Nanoscience, University of Missouri-St Louis, 1 University Blvd, St Louis, MO 63121, USA.

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http://dx.doi.org/10.4155/fmc.15.120DOI Listing
August 2016

Heterogeneous dynamics in DNA site discrimination by the structurally homologous DNA-binding domains of ETS-family transcription factors.

Nucleic Acids Res 2015 Apr 30;43(8):4322-31. Epub 2015 Mar 30.

College of Pharmacy, Washington State University, Spokane, WA 99210, USA

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http://dx.doi.org/10.1093/nar/gkv267DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4417174PMC
April 2015

Modulation of DNA-polyamide interaction by β-alanine substitutions: a study of positional effects on binding affinity, kinetics and thermodynamics.

Org Biomol Chem 2014 Oct;12(38):7523-36

Department of Chemistry, Center for Diagnostics and Therapeutics, Georgia State University, Atlanta, GA 30303, USA.

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http://dx.doi.org/10.1039/c4ob01456aDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4339220PMC
October 2014

DNA Binding Polyamides and the Importance of DNA Recognition in their use as Gene-Specific and Antiviral Agents.

Med Chem (Los Angeles) 2014 Feb;4:338-344

Department of Chemistry & Biochemistry, University of Missouri-St. Louis, St.Louis, MO 63121, USA ; NanoVir, LLC, Kalamazoo, MI 49008, USA.

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http://dx.doi.org/10.4172/2161-0444.1000162DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4022477PMC
February 2014

Binding studies of a large antiviral polyamide to a natural HPV sequence.

Biochimie 2014 Jul 26;102:83-91. Epub 2014 Feb 26.

Department of Chemistry & Biochemistry and the Center for Nanoscience, University of Missouri St. Louis, St. Louis, MO 63121, United States. Electronic address:

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http://dx.doi.org/10.1016/j.biochi.2014.02.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4047171PMC
July 2014

Mapping small DNA ligand hydroxyl radical footprinting and affinity cleavage products for capillary electrophoresis.

Anal Biochem 2013 Aug 19;439(2):99-101. Epub 2013 Apr 19.

Department of Chemistry and Biochemistry and Center for Nanoscience, University of Missouri-St. Louis, St. Louis, MO 63121, USA.

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http://dx.doi.org/10.1016/j.ab.2013.04.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3713177PMC
August 2013

Correlation of local effects of DNA sequence and position of β-alanine inserts with polyamide-DNA complex binding affinities and kinetics.

Biochemistry 2012 Dec 28;51(49):9796-806. Epub 2012 Nov 28.

Department of Chemistry, Georgia State University, Atlanta, GA 30303, USA.

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http://dx.doi.org/10.1021/bi301327vDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3567211PMC
December 2012

Promoter scanning of the human COX-2 gene with 8-ring polyamides: unexpected weakening of polyamide-DNA binding and selectivity by replacing an internal N-Me-pyrrole with β-alanine.

Biochimie 2013 Feb 27;95(2):271-9. Epub 2012 Sep 27.

Department of Chemistry & Biochemistry, Center for Nanoscience, University of Missouri-St. Louis, One University Blvd., St. Louis, MO 63121, USA.

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http://dx.doi.org/10.1016/j.biochi.2012.09.023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3557744PMC
February 2013

Fluorescence assay of polyamide-DNA interactions.

Anal Biochem 2012 Apr 28;423(1):178-83. Epub 2012 Jan 28.

Department of Chemistry and Biochemistry and Center for Nanoscience, University of Missouri-St. Louis, St. Louis, MO 63121, USA.

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http://dx.doi.org/10.1016/j.ab.2012.01.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3299850PMC
April 2012

HPV episome levels are potently decreased by pyrrole-imidazole polyamides.

Antiviral Res 2011 Aug 2;91(2):177-86. Epub 2011 Jun 2.

NanoVir, LLC, 4717 Campus Drive, Kalamazoo, MI 49008, USA.

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http://dx.doi.org/10.1016/j.antiviral.2011.05.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3135741PMC
August 2011

Ion-exchange chromatography followed by ESI-MS for quantitative analysis of sugar monophosphates from glucose catabolism.

J Am Soc Mass Spectrom 2006 Jan 15;17(1):104-107. Epub 2005 Dec 15.

Department of Chemistry and Biochemistry, University of Missouri, St. Louis, Missouri, USA.

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http://link.springer.com/10.1016/j.jasms.2005.10.004
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http://dx.doi.org/10.1016/j.jasms.2005.10.004DOI Listing
January 2006

Synthesis and evaluation of RNA transesterification efficiency using stereospecific serinol-terpyridine conjugates.

Nucleosides Nucleotides Nucleic Acids 2005 ;24(9):1309-23

Department of Chemistry, Washington University, St. Louis, Missouri, USA.

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http://dx.doi.org/10.1080/15257770500230426DOI Listing
December 2005

Structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA.

Nature 2002 Jun;417(6892):971-4

Bioscience Division/Structural Biology Center, Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, Illinois 60439, USA.

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http://dx.doi.org/10.1038/nature00833DOI Listing
June 2002

Inorganic Mimics of Ribonucleases and Ribozymes: From Random Cleavage to Sequence-Specific Chemistry to Catalytic Antisense Drugs.

Chem Rev 1998 May;98(3):939-960

Department of Chemistry, Washington University, St. Louis, Missouri 63130.

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http://dx.doi.org/10.1021/cr960422kDOI Listing
May 1998

Introduction to RNA/DNA Cleavage.

Authors:
James K. Bashkin

Chem Rev 1998 May;98(3):937-938

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http://dx.doi.org/10.1021/cr970415bDOI Listing
May 1998

Synthesis and Characterization of Cobalt-Cage Complexes with Pendant Phenol Groups.

Inorg Chem 1996 Jun;35(13):3828-3835

Department of Chemistry, Washington University, St. Louis, Missouri 63130-4899.

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http://dx.doi.org/10.1021/ic951610gDOI Listing
June 1996