James A Coffman

James A Coffman

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James A Coffman

James A Coffman

Publications by authors named "James A Coffman"

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37Publications

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Redox regulation of development and regeneration.

Curr Opin Genet Dev 2019 Jul 11;57:9-15. Epub 2019 Jul 11.

Institute of Cellular and Organismic Biology, Academia Sinica, Taipei 11529, Taiwan. Electronic address:

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http://dx.doi.org/10.1016/j.gde.2019.06.002DOI Listing
July 2019

Maintenance of somatic tissue regeneration with age in short- and long-lived species of sea urchins.

Aging Cell 2016 08 20;15(4):778-87. Epub 2016 Apr 20.

MDI Biological Laboratory, 159 Old Bar Harbor Road, Salisbury Cove, ME, 04672, USA.

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http://dx.doi.org/10.1111/acel.12487DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4933669PMC
August 2016

An Elk transcription factor is required for Runx-dependent survival signaling in the sea urchin embryo.

Dev Biol 2016 08 24;416(1):173-186. Epub 2016 May 24.

Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Napoli 80121, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.ydbio.2016.05.026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4961547PMC
August 2016

Cortisol-treated zebrafish embryos develop into pro-inflammatory adults with aberrant immune gene regulation.

Biol Open 2016 Aug 15;5(8):1134-41. Epub 2016 Aug 15.

MDI Biological Laboratory, Kathryn W. Davis Center for Regenerative Biology and Medicine, Salisbury Cove, ME, 04672, USA

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http://bio.biologists.org/lookup/doi/10.1242/bio.020065
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http://dx.doi.org/10.1242/bio.020065DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5004618PMC
August 2016

Developmental control of transcriptional and proliferative potency during the evolutionary emergence of animals.

Dev Dyn 2015 Oct 4;244(10):1193-201. Epub 2015 Aug 4.

MDI Biological Laboratory, Salisbury Cove, Maine.

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http://dx.doi.org/10.1002/dvdy.24305DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4705838PMC
October 2015

On the meaning of chance in biology.

Authors:
James A Coffman

Biosemiotics 2014 Dec;7(3):377-388

Mount Desert Island Biological Laboratory, Salisbury Cove, Maine, USA 04672.

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http://dx.doi.org/10.1007/s12304-014-9206-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4392722PMC
December 2014

Developmental cis-regulatory analysis of the cyclin D gene in the sea urchin Strongylocentrotus purpuratus.

Biochem Biophys Res Commun 2013 Oct 1;440(3):413-8. Epub 2013 Oct 1.

Mount Desert Island Biological Laboratory, PO Box 35, Salisbury Cove, ME 04672, USA; The Graduate School of Biomedical Science and Engineering, The University of Maine, Orono, ME 04469, USA. Electronic address:

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http://dx.doi.org/10.1016/j.bbrc.2013.09.094DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3871186PMC
October 2013

Sea urchin akt activity is Runx-dependent and required for post-cleavage stage cell division.

Biol Open 2013 May 25;2(5):472-8. Epub 2013 Mar 25.

Present address: King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.

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http://dx.doi.org/10.1242/bio.20133913DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3654265PMC
May 2013

Oral-aboral axis specification in the sea urchin embryo III. Role of mitochondrial redox signaling via H2O2.

Dev Biol 2009 Jun 27;330(1):123-30. Epub 2009 Mar 27.

Mount Desert Island Biological Laboratory, Old Bar Harbor Road, Salisbury Cove, ME 04672, USA.

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http://dx.doi.org/10.1016/j.ydbio.2009.03.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2748885PMC
June 2009

Is Runx a linchpin for developmental signaling in metazoans?

Authors:
James A Coffman

J Cell Biochem 2009 May;107(2):194-202

Mount Desert Island Biological Laboratory, Salisbury Cove, Maine 04672, USA.

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http://doi.wiley.com/10.1002/jcb.22143
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http://dx.doi.org/10.1002/jcb.22143DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2762205PMC
May 2009

Mitochondrial patterns and function in animal development.

Authors:
James A Coffman

Semin Cell Dev Biol 2009 May 25;20(3):320. Epub 2009 Mar 25.

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http://dx.doi.org/10.1016/j.semcdb.2009.03.009DOI Listing
May 2009

Mitochondria and metazoan epigenesis.

Authors:
James A Coffman

Semin Cell Dev Biol 2009 May 13;20(3):321-9. Epub 2009 Feb 13.

Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA.

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http://dx.doi.org/10.1016/j.semcdb.2009.02.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2756741PMC
May 2009

Mitochondria, redox signaling and axis specification in metazoan embryos.

Dev Biol 2007 Aug 5;308(2):266-80. Epub 2007 Jun 5.

Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA.

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http://dx.doi.org/10.1016/j.ydbio.2007.05.042DOI Listing
August 2007

Cis-regulatory control of the nodal gene, initiator of the sea urchin oral ectoderm gene network.

Dev Biol 2007 Jun 28;306(2):860-9. Epub 2007 Mar 28.

Division of Biology, California Institute of Technology, Pasadena, CA 91125, USA.

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http://dx.doi.org/10.1016/j.ydbio.2007.03.033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063469PMC
June 2007

The genomic underpinnings of apoptosis in Strongylocentrotus purpuratus.

Dev Biol 2006 Dec 30;300(1):321-34. Epub 2006 Aug 30.

Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA.

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http://dx.doi.org/10.1016/j.ydbio.2006.08.053DOI Listing
December 2006

The genomic repertoire for cell cycle control and DNA metabolism in S. purpuratus.

Dev Biol 2006 Dec 14;300(1):238-51. Epub 2006 Sep 14.

Observatoire Océanologique de Banyuls-Laboratoire Arago, CNRS-UMR7628/UPMC, 66650 Banyuls-sur-Mer, France.

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http://dx.doi.org/10.1016/j.ydbio.2006.09.012DOI Listing
December 2006

The genome of the sea urchin Strongylocentrotus purpuratus.

Authors:
Erica Sodergren George M Weinstock Eric H Davidson R Andrew Cameron Richard A Gibbs Robert C Angerer Lynne M Angerer Maria Ina Arnone David R Burgess Robert D Burke James A Coffman Michael Dean Maurice R Elphick Charles A Ettensohn Kathy R Foltz Amro Hamdoun Richard O Hynes William H Klein William Marzluff David R McClay Robert L Morris Arcady Mushegian Jonathan P Rast L Courtney Smith Michael C Thorndyke Victor D Vacquier Gary M Wessel Greg Wray Lan Zhang Christine G Elsik Olga Ermolaeva Wratko Hlavina Gretchen Hofmann Paul Kitts Melissa J Landrum Aaron J Mackey Donna Maglott Georgia Panopoulou Albert J Poustka Kim Pruitt Victor Sapojnikov Xingzhi Song Alexandre Souvorov Victor Solovyev Zheng Wei Charles A Whittaker Kim Worley K James Durbin Yufeng Shen Olivier Fedrigo David Garfield Ralph Haygood Alexander Primus Rahul Satija Tonya Severson Manuel L Gonzalez-Garay Andrew R Jackson Aleksandar Milosavljevic Mark Tong Christopher E Killian Brian T Livingston Fred H Wilt Nikki Adams Robert Bellé Seth Carbonneau Rocky Cheung Patrick Cormier Bertrand Cosson Jenifer Croce Antonio Fernandez-Guerra Anne-Marie Genevière Manisha Goel Hemant Kelkar Julia Morales Odile Mulner-Lorillon Anthony J Robertson Jared V Goldstone Bryan Cole David Epel Bert Gold Mark E Hahn Meredith Howard-Ashby Mark Scally John J Stegeman Erin L Allgood Jonah Cool Kyle M Judkins Shawn S McCafferty Ashlan M Musante Robert A Obar Amanda P Rawson Blair J Rossetti Ian R Gibbons Matthew P Hoffman Andrew Leone Sorin Istrail Stefan C Materna Manoj P Samanta Viktor Stolc Waraporn Tongprasit Qiang Tu Karl-Frederik Bergeron Bruce P Brandhorst James Whittle Kevin Berney David J Bottjer Cristina Calestani Kevin Peterson Elly Chow Qiu Autumn Yuan Eran Elhaik Dan Graur Justin T Reese Ian Bosdet Shin Heesun Marco A Marra Jacqueline Schein Michele K Anderson Virginia Brockton Katherine M Buckley Avis H Cohen Sebastian D Fugmann Taku Hibino Mariano Loza-Coll Audrey J Majeske Cynthia Messier Sham V Nair Zeev Pancer David P Terwilliger Cavit Agca Enrique Arboleda Nansheng Chen Allison M Churcher F Hallböök Glen W Humphrey Mohammed M Idris Takae Kiyama Shuguang Liang Dan Mellott Xiuqian Mu Greg Murray Robert P Olinski Florian Raible Matthew Rowe John S Taylor Kristin Tessmar-Raible D Wang Karen H Wilson Shunsuke Yaguchi Terry Gaasterland Blanca E Galindo Herath J Gunaratne Celina Juliano Masashi Kinukawa Gary W Moy Anna T Neill Mamoru Nomura Michael Raisch Anna Reade Michelle M Roux Jia L Song Yi-Hsien Su Ian K Townley Ekaterina Voronina Julian L Wong Gabriele Amore Margherita Branno Euan R Brown Vincenzo Cavalieri Véronique Duboc Louise Duloquin Constantin Flytzanis Christian Gache François Lapraz Thierry Lepage Annamaria Locascio Pedro Martinez Giorgio Matassi Valeria Matranga Ryan Range Francesca Rizzo Eric Röttinger Wendy Beane Cynthia Bradham Christine Byrum Tom Glenn Sofia Hussain Gerard Manning Esther Miranda Rebecca Thomason Katherine Walton Athula Wikramanayke Shu-Yu Wu Ronghui Xu C Titus Brown Lili Chen Rachel F Gray Pei Yun Lee Jongmin Nam Paola Oliveri Joel Smith Donna Muzny Stephanie Bell Joseph Chacko Andrew Cree Stacey Curry Clay Davis Huyen Dinh Shannon Dugan-Rocha Jerry Fowler Rachel Gill Cerrissa Hamilton Judith Hernandez Sandra Hines Jennifer Hume Laronda Jackson Angela Jolivet Christie Kovar Sandra Lee Lora Lewis George Miner Margaret Morgan Lynne V Nazareth Geoffrey Okwuonu David Parker Ling-Ling Pu Rachel Thorn Rita Wright

Science 2006 Nov;314(5801):941-52

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http://dx.doi.org/10.1126/science.1133609DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3159423PMC
November 2006

CBFbeta is a facultative Runx partner in the sea urchin embryo.

BMC Biol 2006 Feb 9;4. Epub 2006 Feb 9.

Stowers Institute for Medical Research, Kansas City, MO 64110, USA.

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http://dx.doi.org/10.1186/1741-7007-4-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1395345PMC
February 2006

Runx-dependent expression of PKC is critical for cell survival in the sea urchin embryo.

BMC Biol 2005 Aug 2;3:18. Epub 2005 Aug 2.

Stowers Institute for Medical Research, 1000 E, 50th Street, Kansas City, Missouri 64110, USA.

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http://bmcbiol.biomedcentral.com/articles/10.1186/1741-7007-
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http://dx.doi.org/10.1186/1741-7007-3-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1187879PMC
August 2005

On reductionism, organicism, somatic mutations and cancer.

Authors:
James A Coffman

Bioessays 2005 Apr;27(4):459; author reply 460-1

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http://dx.doi.org/10.1002/bies.20216DOI Listing
April 2005

Identification of sequence-specific DNA binding proteins.

Methods Cell Biol 2004 ;74:653-75

Stowers Institute for Medical Research, Kansas City, Missouri 64110, USA.

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http://dx.doi.org/10.1016/s0091-679x(04)74026-1DOI Listing
February 2005

Sea urchin vault structure, composition, and differential localization during development.

BMC Dev Biol 2005 Feb 14;5. Epub 2005 Feb 14.

Department of Molecular Physiology and Biophysics, Vanderbilt University Medical Center, Nashville, TN, USA.

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http://dx.doi.org/10.1186/1471-213X-5-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC550661PMC
February 2005

Evaluation of developmental phenotypes produced by morpholino antisense targeting of a sea urchin Runx gene.

BMC Biol 2004 May 7;2. Epub 2004 May 7.

Stowers Institute for Medical Research, 1000 E, 50th Street, Kansas City, MO 64110, USA.

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http://dx.doi.org/10.1186/1741-7007-2-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC419381PMC
May 2004

Cell cycle development.

Authors:
James A Coffman

Dev Cell 2004 Mar;6(3):321-7

Stowers Institute for Medical Research, 1000 East 50th Street, Kansas City, MO 64110, USA.

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March 2004

Runx transcription factors and the developmental balance between cell proliferation and differentiation.

Authors:
James A Coffman

Cell Biol Int 2003 ;27(4):315-24

Stowers Institute for Medical Research, 1000 E. 50th Street, Kansas City, MO 64110, USA.

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December 2003

The evolution of Runx genes I. A comparative study of sequences from phylogenetically diverse model organisms.

BMC Evol Biol 2003 Mar 24;3. Epub 2003 Mar 24.

Stowers Institute for Medical Research, 1000 E, 50th Street, Kansas City, MO 64110, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC153517PMC
March 2003

The expression of SpRunt during sea urchin embryogenesis.

Mech Dev 2002 Sep;117(1-2):327-30

Stowers Institute for Medical Research, 1000 East 50th Street, Kansas City, MO 64110, USA.

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http://dx.doi.org/10.1016/s0925-4773(02)00201-0DOI Listing
September 2002