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Publications Authored by Jakub O Westholm | PubFacts
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16Publications

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Comprehensive RNA-Sequencing Analysis in Serum and Muscle Reveals Novel Small RNA Signatures with Biomarker Potential for DMD.

Mol Ther Nucleic Acids 2018 Dec 17;13:1-15. Epub 2018 Aug 17.

Department of Physiology, Anatomy and Genetics, University of Oxford, South Parks Road, Oxford OX1 3QX, UK; Development, Aging and Regeneration Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA. Electronic address:

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http://dx.doi.org/10.1016/j.omtn.2018.08.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6140421PMC
December 2018

Genome-wide identification of Grainy head targets in reveals regulatory interactions with the POU domain transcription factor Vvl.

Development 2017 09 31;144(17):3145-3155. Epub 2017 Jul 31.

Department of Molecular Biosciences, Wenner-Gren Institute, Stockholm University, S10691, Stockholm, Sweden

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http://dx.doi.org/10.1242/dev.143297DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5627367PMC
September 2017

Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation.

Cell Rep 2014 Dec 26;9(5):1966-1980. Epub 2014 Nov 26.

Department of Developmental Biology, Sloan-Kettering Institute, 1275 York Avenue, Box 252, New York, NY 10065, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2014.10.062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4279448PMC
December 2014

Intertwined pathways for Argonaute-mediated microRNA biogenesis in Drosophila.

Nucleic Acids Res 2014 Feb 12;42(3):1987-2002. Epub 2013 Nov 12.

Department of Developmental Biology, Sloan-Kettering Institute, 1275 York Ave, Box 252, New York, NY 10065, USA and Molecular Biology Program, Weill Graduate School of Medical Sciences, Cornell University, New York, NY 10065, USA.

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http://dx.doi.org/10.1093/nar/gkt1038DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3919586PMC
February 2014

Widespread and extensive lengthening of 3' UTRs in the mammalian brain.

Genome Res 2013 May 21;23(5):812-25. Epub 2013 Mar 21.

Department of Developmental Biology, Sloan-Kettering Institute, New York, New York 10065, USA.

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http://dx.doi.org/10.1101/gr.146886.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3638137PMC
May 2013

The BEN domain is a novel sequence-specific DNA-binding domain conserved in neural transcriptional repressors.

Genes Dev 2013 Mar 6;27(6):602-14. Epub 2013 Mar 6.

Department of Developmental Biology, Sloan-Kettering Institute, New York, New York 10065, USA.

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http://dx.doi.org/10.1101/gad.213314.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3613608PMC
March 2013

Discovery of hundreds of mirtrons in mouse and human small RNA data.

Genome Res 2012 Sep;22(9):1634-45

Department of Developmental Biology, Sloan-Kettering Institute, New York, New York 10065, USA.

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http://dx.doi.org/10.1101/gr.133553.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3431481PMC
September 2012

Vive la différence: biogenesis and evolution of microRNAs in plants and animals.

Genome Biol 2011 28;12(4):221. Epub 2011 Apr 28.

Department of Biology, The Pennsylvania State University, 208 Mueller Laboratory, University Park, PA 16802, USA.

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http://dx.doi.org/10.1186/gb-2011-12-4-221DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3218855PMC
February 2012

Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs.

RNA 2012 Feb 21;18(2):177-92. Epub 2011 Dec 21.

Department of Developmental Biology, Sloan-Kettering Institute, New York, NY 10065, USA.

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http://dx.doi.org/10.1261/rna.030627.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3264906PMC
February 2012

Mirtrons: microRNA biogenesis via splicing.

Biochimie 2011 Nov 21;93(11):1897-904. Epub 2011 Jun 21.

Department of Developmental Biology, Sloan-Kettering Institute, 1275 York Ave, Box 252, NY 10065, USA.

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http://dx.doi.org/10.1016/j.biochi.2011.06.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3185189PMC
November 2011

Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans.

Genome Res 2011 Feb 22;21(2):286-300. Epub 2010 Dec 22.

Department of Developmental Biology, Sloan-Kettering Institute, 1017 Rockefeller Research Laboratories, New York, New York 10065, USA.

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http://dx.doi.org/10.1101/gr.113050.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3032932PMC
February 2011