Jacques Ravel

Jacques Ravel

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Jacques Ravel

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The vaginal microbiota and behavioral factors associated with genital Candida albicans detection in reproductive-age women.

Sex Transm Dis 2019 Sep 10. Epub 2019 Sep 10.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

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http://dx.doi.org/10.1097/OLQ.0000000000001066DOI Listing
September 2019

Crypt- and Mucosa-Associated Core Microbiotas in Humans and Their Alteration in Colon Cancer Patients.

MBio 2019 Jul 16;10(4). Epub 2019 Jul 16.

Unité de Pathogénie Microbienne Moléculaire, Institut National de la Santé et de la Recherche Médicale (INSERM), U1202, Institut Pasteur, Paris, France.

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http://dx.doi.org/10.1128/mBio.01315-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6635529PMC
July 2019

Dynamics of Vaginal and Rectal Microbiota Over Several Menstrual Cycles in Female Cynomolgus Macaques.

Front Cell Infect Microbiol 2019 12;9:188. Epub 2019 Jun 12.

CEA, Université Paris-Sud, Inserm, U1184 "Immunology of Viral Infections and Autoimmune Diseases" (IMVA), IDMIT Department, IBFJ, Fontenay-aux-Roses, France.

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http://dx.doi.org/10.3389/fcimb.2019.00188DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6582644PMC
June 2019

The authors reply.

Gut Microbes 2019 5;10(2):113-114. Epub 2018 Oct 5.

e University of Maryland Francis King Carey School of Law , Baltimore , MD , USA.

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http://dx.doi.org/10.1080/19490976.2018.1516980DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6546337PMC
April 2019

Anal Microbial Patterns and Oncogenic Human Papillomavirus in a Pilot Study of Nigerian Men Who Have Sex with Men at Risk for or Living with HIV.

AIDS Res Hum Retroviruses 2019 Mar 17;35(3):267-275. Epub 2018 Oct 17.

1 Division of Epidemiology and Prevention, Institute of Human Virology, University of Maryland School of Medicine, Baltimore, Maryland.

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http://dx.doi.org/10.1089/AID.2018.0158DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6434585PMC
March 2019

Cervicovaginal microbiota and local immune response modulate the risk of spontaneous preterm delivery.

Nat Commun 2019 03 21;10(1):1305. Epub 2019 Mar 21.

Institute for Genome Sciences and Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, 21201, USA.

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http://www.nature.com/articles/s41467-019-09285-9
Publisher Site
http://dx.doi.org/10.1038/s41467-019-09285-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6428888PMC
March 2019

Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform.

mSystems 2019 Jan-Feb;4(1). Epub 2019 Feb 19.

Institute for Genome Sciences and Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1128/mSystems.00029-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6381223PMC
February 2019

The Microbiome and Men's Health.

Clin Chem 2019 Jan 20;65(1):28-35. Epub 2018 Nov 20.

Professor and Associate Director for Genomics, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD.

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http://dx.doi.org/10.1373/clinchem.2018.287284DOI Listing
January 2019

Complete Genome Sequence of Lactobacillus crispatus CO3MRSI1.

Microbiol Resour Announc 2019 Jan 31;8(5). Epub 2019 Jan 31.

Institute for Genome Sciences, University of Maryland Baltimore, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1128/MRA.01538-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6357639PMC
January 2019

Vaginal microbiota composition and association with prevalent infection: a cross-sectional study of young women attending a STI clinic in France.

Sex Transm Infect 2018 12 22;94(8):616-618. Epub 2018 Jan 22.

Biostatistics, Biomathematics, Pharmacoepidemiology and Infectious Diseases (B2PhI), Université Versailles Saint-Quentin-en-Yvelines, INSERM, Institut Pasteur, Université Paris-Saclay, Montigny-le-Bretonneux, France.

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http://dx.doi.org/10.1136/sextrans-2017-053346DOI Listing
December 2018

Host-targeted niclosamide inhibits C. difficile virulence and prevents disease in mice without disrupting the gut microbiota.

Nat Commun 2018 12 7;9(1):5233. Epub 2018 Dec 7.

Molecular Medicine, Hospital for Sick Children, 686 Bay St., Toronto, ON, M5G 0A4, Canada.

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http://dx.doi.org/10.1038/s41467-018-07705-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6286312PMC
December 2018

Microbial Biomarkers of Intestinal Barrier Maturation in Preterm Infants.

Front Microbiol 2018 14;9:2755. Epub 2018 Nov 14.

Department of Pediatrics, University of Maryland School of Medicine, Baltimore, MD, United States.

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http://dx.doi.org/10.3389/fmicb.2018.02755DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6246636PMC
November 2018

Herpes simplex virus-binding IgG traps HSV in human cervicovaginal mucus across the menstrual cycle and diverse vaginal microbial composition.

Mucosal Immunol 2018 09 9;11(5):1477-1486. Epub 2018 Jul 9.

Division of Pharmacoengineering and Molecular Pharmaceutics, Eshelman School of Pharmacy, University of North Carolina-Chapel Hill, Chapel Hill, NC, 27519, USA.

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http://dx.doi.org/10.1038/s41385-018-0054-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6485947PMC
September 2018

Cervicovaginal microbiota, women's health, and reproductive outcomes.

Fertil Steril 2018 08;110(3):327-336

School of Life Sciences, University of Technology Sydney, Sydney, New South Wales, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.fertnstert.2018.06.036DOI Listing
August 2018

Anti-HIV-1 Activity of Lactic Acid in Human Cervicovaginal Fluid.

mSphere 2018 07 5;3(4). Epub 2018 Jul 5.

Disease Elimination Program, Life Sciences Discipline, Burnet Institute, Melbourne, Victoria, Australia

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http://dx.doi.org/10.1128/mSphere.00055-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6034077PMC
July 2018

A retrospective pilot study to determine whether the reproductive tract microbiota differs between women with a history of infertility and fertile women.

Aust N Z J Obstet Gynaecol 2018 Jun 26;58(3):341-348. Epub 2017 Dec 26.

Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Qld, Australia.

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http://dx.doi.org/10.1111/ajo.12754DOI Listing
June 2018

Differential immune responses and microbiota profiles in children with autism spectrum disorders and co-morbid gastrointestinal symptoms.

Brain Behav Immun 2018 05 20;70:354-368. Epub 2018 Mar 20.

Department of Medical Microbiology and Immunology, University of California Davis, USA; MIND Institute, University of California Davis, USA; Children's Center for Environmental Health, University of California Davis, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.bbi.2018.03.025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5953830PMC
May 2018

Anti-HIV-1 Activity of Lactic Acid in Human Cervicovaginal Fluid.

mSphere 2018 07 5;3(4). Epub 2018 Jul 5.

Disease Elimination Program, Life Sciences Discipline, Burnet Institute, Melbourne, Victoria, Australia

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http://dx.doi.org/10.1128/mSphere.00055-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6034077PMC
July 2018

Molecular Characterization of the Human Stomach Microbiota in Gastric Cancer Patients.

Front Cell Infect Microbiol 2017 6;7:302. Epub 2017 Jul 6.

Clinical Genetics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of HealthBethesda, MD, United States.

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http://dx.doi.org/10.3389/fcimb.2017.00302DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5498480PMC
March 2018

-dominated vaginal microbiota is associated with increased susceptibility to infection in Dutch women: a case-control study.

Sex Transm Infect 2018 03 25;94(2):117-123. Epub 2017 Sep 25.

Department of Infectious Diseases, Public Health Service, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1136/sextrans-2017-053133DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6083440PMC
March 2018

Associations between sexual habits, menstrual hygiene practices, demographics and the vaginal microbiome as revealed by Bayesian network analysis.

PLoS One 2018 24;13(1):e0191625. Epub 2018 Jan 24.

Department of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, Colorado, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0191625PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5783405PMC
March 2018

The implausible "in vivo" role of hydrogen peroxide as an antimicrobial factor produced by vaginal microbiota.

Microbiome 2018 02 6;6(1):29. Epub 2018 Feb 6.

Institute for Genome Sciences, University of Maryland School of Medicine, 801 West Baltimore Street, Baltimore, MD, 21201, USA.

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http://dx.doi.org/10.1186/s40168-018-0418-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5801833PMC
February 2018

Clinical Relevance of Gastrointestinal Microbiota During Pregnancy: A Primer for Nurses.

Biol Res Nurs 2018 01 27;20(1):84-102. Epub 2017 Sep 27.

3 School of Nursing, University of Maryland, Baltimore, MD, USA.

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http://dx.doi.org/10.1177/1099800417732412DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5942499PMC
January 2018

"Available upon request": not good enough for microbiome data!

Microbiome 2018 01 10;6(1). Epub 2018 Jan 10.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA.

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http://dx.doi.org/10.1186/s40168-017-0394-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5761205PMC
January 2018

Does Active Oral Sex Contribute to Female Infertility?

J Infect Dis 2017 11;216(8):932-935

Department of Microbiology and Immunology.

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http://dx.doi.org/10.1093/infdis/jix419DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5789812PMC
November 2017

Early screening for Chlamydia trachomatis in young women for primary prevention of pelvic inflammatory disease (i-Predict): study protocol for a randomised controlled trial.

Trials 2017 Nov 13;18(1):534. Epub 2017 Nov 13.

Biostatistics, Biomathematics, Pharmacoepidemiology and Infectious Diseases (B2PhI), Inserm, UVSQ, Institut Pasteur, Université Paris-Saclay, 2 avenue de la source de la Bièvre, 78180, Montigny-le-Bretonneux, France.

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http://dx.doi.org/10.1186/s13063-017-2211-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5683219PMC
November 2017

Vaginal Candida spp. genomes from women with vulvovaginal candidiasis.

Pathog Dis 2017 08;75(6)

Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201 USA.

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http://dx.doi.org/10.1093/femspd/ftx061DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5827580PMC
August 2017

and in the Vaginal Microbiota and Persistent High-Risk Human Papillomavirus Infection.

Front Public Health 2017 26;5:140. Epub 2017 Jun 26.

Department of Epidemiology and Public Health, University of Maryland School of Medicine, Baltimore, MD, United States.

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http://dx.doi.org/10.3389/fpubh.2017.00140DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5483445PMC
June 2017

A proposed definition of microbiota transplantation for regulatory purposes.

Gut Microbes 2017 05 20;8(3):208-213. Epub 2017 Mar 20.

d Division of Gastroenterology & Hepatology , University of Maryland School of Medicine, VA Maryland Health Care System , Baltimore , MD , USA.

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http://dx.doi.org/10.1080/19490976.2017.1293223DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5479380PMC
May 2017

The vaginal mycobiome: A contemporary perspective on fungi in women's health and diseases.

Virulence 2017 04 22;8(3):342-351. Epub 2016 Sep 22.

a Institute for Genome Sciences, University of Maryland School of Medicine , Baltimore , MD , USA.

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http://dx.doi.org/10.1080/21505594.2016.1237332DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5411243PMC
April 2017

Rectal microbiota among HIV-uninfected, untreated HIV, and treated HIV-infected in Nigeria.

AIDS 2017 Mar;31(6):857-862

aInstitute of Human Virology, University of Maryland School of Medicine bUniversity of Maryland Greenebaum Comprehensive Cancer Center cDepartment of Epidemiology and Public Health dInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore eUS Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring fHenry M. Jackson Foundation for the Advancement of Military Medicine, Bethesda, Maryland, USA gInstitute of Human Virology, Nigeria, Abuja, Nigeria hSchool of Public Health, University of Maryland, College Park iJohns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1097/QAD.0000000000001409DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5342931PMC
March 2017

Evaluation of Buccal Cell Samples for Studies of Oral Microbiota.

Cancer Epidemiol Biomarkers Prev 2017 02 21;26(2):249-253. Epub 2016 Oct 21.

Genetic Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, DHHS, Bethesda, Maryland.

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http://dx.doi.org/10.1158/1055-9965.EPI-16-0538DOI Listing
February 2017

The vaginal microbiota, host defence and reproductive physiology.

J Physiol 2017 01 5;595(2):451-463. Epub 2016 May 5.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, 21201, USA.

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http://dx.doi.org/10.1113/JP271694DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5233653PMC
January 2017

The effect of cigarette smoking on the oral and nasal microbiota.

Microbiome 2017 01 17;5(1). Epub 2017 Jan 17.

Genetic Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, DHHS, 9609 Medical Center Drive, Room 6E508, Bethesda, MD, 20892-9769, USA.

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http://dx.doi.org/10.1186/s40168-016-0226-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5240432PMC
January 2017

Draft Genome Sequence of Biocontrol Agent Bacillus cereus UW85.

Genome Announc 2016 Sep 1;4(5). Epub 2016 Sep 1.

Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, USA

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http://dx.doi.org/10.1128/genomeA.00910-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5009980PMC
September 2016

Characterizing human lung tissue microbiota and its relationship to epidemiological and clinical features.

Genome Biol 2016 07 28;17(1):163. Epub 2016 Jul 28.

Genetic Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, DHHS, Bethesda, MD, USA.

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http://dx.doi.org/10.1186/s13059-016-1021-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4964003PMC
July 2016

Functional interactions of archaea, bacteria and viruses in a hypersaline endolithic community.

Environ Microbiol 2016 06 21;18(6):2064-77. Epub 2016 Mar 21.

Biology Department, The Johns Hopkins University, Baltimore, MD, USA.

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http://dx.doi.org/10.1111/1462-2920.13259DOI Listing
June 2016

Nested PCR Biases in Interpreting Microbial Community Structure in 16S rRNA Gene Sequence Datasets.

PLoS One 2015 21;10(7):e0132253. Epub 2015 Jul 21.

Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0132253PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4509648PMC
May 2016

Intricacies of assessing the human microbiome in epidemiologic studies.

Ann Epidemiol 2016 05 12;26(5):311-21. Epub 2016 Apr 12.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore; Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore. Electronic address:

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http://dx.doi.org/10.1016/j.annepidem.2016.04.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4892937PMC
May 2016

Translating the vaginal microbiome: gaps and challenges.

Genome Med 2016 Apr 1;8(1):35. Epub 2016 Apr 1.

Institute for Genome Sciences, Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, USA.

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http://dx.doi.org/10.1186/s13073-016-0291-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4818402PMC
April 2016

Phylogenetic Diversity of Vibrio cholerae Associated with Endemic Cholera in Mexico from 1991 to 2008.

MBio 2016 Mar 15;7(2):e02160. Epub 2016 Mar 15.

Maryland Pathogen Research Institute, University of Maryland, College Park, Maryland, USA CosmosID, Inc., Rockville, Maryland, USA Center of Bioinformatics and Computational Biology, University of Maryland Institute of Advanced Computer Studies, University of Maryland, College Park, Maryland, USA Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA

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http://dx.doi.org/10.1128/mBio.02160-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4807371PMC
March 2016

Lactobacillus crispatus inhibits growth of Gardnerella vaginalis and Neisseria gonorrhoeae on a porcine vaginal mucosa model.

BMC Microbiol 2015 Dec 9;15:276. Epub 2015 Dec 9.

Department of Experimental and Clinical Pharmacology, College of Pharmacy, University of Minnesota, 4-442 McGuire Translational Research Facility, 2001 6th St. SE, Minneapolis, MN, 55455, USA.

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http://dx.doi.org/10.1186/s12866-015-0608-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4675025PMC
December 2015

Uncovering effects of antibiotics on the host and microbiota using transkingdom gene networks.

Gut 2015 Nov 22;64(11):1732-43. Epub 2015 Jan 22.

College of Veterinary Medicine, Oregon State University, Corvallis, Oregon, USA Ghost Lab, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.

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http://dx.doi.org/10.1136/gutjnl-2014-308820DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5166700PMC
November 2015

The vaginal microbiota over an 8- to 10-year period in a cohort of HIV-infected and HIV-uninfected women.

PLoS One 2015 12;10(2):e0116894. Epub 2015 Feb 12.

Department of Immunology & Microbiology, Rush University Medical Center, Chicago, Illinois, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0116894PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4326357PMC
November 2015

Enhanced Trapping of HIV-1 by Human Cervicovaginal Mucus Is Associated with Lactobacillus crispatus-Dominant Microbiota.

MBio 2015 Oct 6;6(5):e01084-15. Epub 2015 Oct 6.

UNC/NCSU Joint Department of Biomedical Engineering, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA Division of Molecular Pharmaceutics, Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA Department of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA

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http://dx.doi.org/10.1128/mBio.01084-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4611035PMC
October 2015

Vaginal biogenic amines: biomarkers of bacterial vaginosis or precursors to vaginal dysbiosis?

Front Physiol 2015 29;6:253. Epub 2015 Sep 29.

Department of Animal and Range Sciences, Montana State University Bozeman, MT, USA ; Department of Microbiology and Immunology, Montana State University Bozeman, MT, USA.

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http://dx.doi.org/10.3389/fphys.2015.00253DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4586437PMC
October 2015

Investigation of the association between the fecal microbiota and breast cancer in postmenopausal women: a population-based case-control pilot study.

J Natl Cancer Inst 2015 Aug 1;107(8). Epub 2015 Jun 1.

Division of Cancer Epidemiology and Genetics (JJG, GJ, XH, GY, RF, RTF, MHG, JS) and Division of Cancer Prevention (RF), National Cancer Institute, Bethesda, MD; Cancer Research Technology Program, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, MD (XX); Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD (JR); Institute for Health Research, Kaiser Permanente Colorado, Denver, CO (HSF).

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http://dx.doi.org/10.1093/jnci/djv147DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4554191PMC
August 2015

The vocabulary of microbiome research: a proposal.

Microbiome 2015 30;3:31. Epub 2015 Jul 30.

Institute for Genome Sciences, University of Maryland School of Medicine, 801 West Baltimore Street, Baltimore, MD 21201 USA ; Department of Microbiology and Immunology, University of Maryland School of Medicine, 685 West Baltimore Street, Baltimore, MD 21201 USA.

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http://dx.doi.org/10.1186/s40168-015-0094-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4520061PMC
August 2015

Chlamydia caviae infection alters abundance but not composition of the guinea pig vaginal microbiota.

Pathog Dis 2015 Jun 10;73(4). Epub 2015 Mar 10.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA

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http://dx.doi.org/10.1093/femspd/ftv019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4445005PMC
June 2015

Fine-scale analysis of 16S rRNA sequences reveals a high level of taxonomic diversity among vaginal Atopobium spp.

Pathog Dis 2015 Jun 15;73(4). Epub 2015 Mar 15.

Department of Biological Sciences and Institute for Bioinformatics and Evolutionary Studies, University of Idaho, Moscow ID 83844, USA.

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http://dx.doi.org/10.1093/femspd/ftv020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4542641PMC
June 2015

Penile Microbiota and Female Partner Bacterial Vaginosis in Rakai, Uganda.

MBio 2015 Jun 16;6(3):e00589. Epub 2015 Jun 16.

Department of Epidemiology, Johns Hopkins University, Bloomberg School of Public Health, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1128/mBio.00589-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4471566PMC
June 2015

Integration of culture-based and molecular analysis of a complex sponge-associated bacterial community.

PLoS One 2014 11;9(3):e90517. Epub 2014 Mar 11.

Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Science, Baltimore, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0090517PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3949686PMC
May 2015

New signaling pathways govern the host response to C. albicans infection in various niches.

Genome Res 2015 May 9;25(5):679-89. Epub 2015 Apr 9.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA; Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA;

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http://dx.doi.org/10.1101/gr.187427.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4417116PMC
May 2015

Interplay between the temporal dynamics of the vaginal microbiota and human papillomavirus detection.

J Infect Dis 2014 Dec 18;210(11):1723-33. Epub 2014 Jun 18.

Department of Epidemiology, Johns Hopkins School of Public Health, Baltimore, Maryland.

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http://dx.doi.org/10.1093/infdis/jiu330DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4296189PMC
December 2014

Associations of the fecal microbiome with urinary estrogens and estrogen metabolites in postmenopausal women.

J Clin Endocrinol Metab 2014 Dec;99(12):4632-40

Department of Epidemiology (B.J.F.), Fay W. Boozman College of Public Health, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205; Divisions of Cancer Epidemiology and Genetics (B.J.F., R.F., N.H.G., J.J.G.) and Cancer Prevention (R.F.), National Cancer Institute, National Institutes of Health, Department of Health and Human Services, Bethesda, Maryland 20892-9704; Institute for Health Research (H.S.F.), Kaiser Permanente Colorado, Denver, Colorado 80231; Cancer Research Technology Program (X.X.), Leidos Biomedical Research, Inc, Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702; and Institute for Genome Sciences (J.R.), University of Maryland, Baltimore, Maryland 21201.

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http://dx.doi.org/10.1210/jc.2014-2222DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4255131PMC
December 2014

An effective intervention to reduce intravaginal practices among HIV-1 uninfected Kenyan women.

AIDS Res Hum Retroviruses 2014 Nov 29;30(11):1046-54. Epub 2014 Sep 29.

1 Division of Infectious Diseases, Department of Medicine, New York University School of Medicine , New York, New York.

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http://dx.doi.org/10.1089/aid.2013.0251DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4208596PMC
November 2014

Advancing the microbiome research community.

Cell 2014 Oct;159(2):227-30

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA; Center for Health-Related Informatics and Bioimaging, University of Maryland School of Medicine, Baltimore, MD 21201, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2014.09.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4221798PMC
October 2014

Association between cigarette smoking and the vaginal microbiota: a pilot study.

BMC Infect Dis 2014 Aug 28;14:471. Epub 2014 Aug 28.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA.

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http://dx.doi.org/10.1186/1471-2334-14-471DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4161850PMC
August 2014

The vaginal microbiota of pregnant women who subsequently have spontaneous preterm labor and delivery and those with a normal delivery at term.

Microbiome 2014 27;2:18. Epub 2014 May 27.

Institute for Genome Sciences, University of Maryland School of Medicine, 801 West Baltimore Street, Baltimore, MD 21201, USA ; Department of Microbiology and Immunology, University of Maryland School of Medicine, 685 W Baltimore St #480, Baltimore, MD 21201, USA.

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http://dx.doi.org/10.1186/2049-2618-2-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4066267PMC
July 2014

Early microRNA expression profile as a prognostic biomarker for the development of pelvic inflammatory disease in a mouse model of chlamydial genital infection.

MBio 2014 Jun 24;5(3):e01241-14. Epub 2014 Jun 24.

Department of Microbiology and Immunology, University of Arkansas for Medical Sciences and Arkansas Children's Hospital Research Institute, Little Rock, Arkansas, USA.

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http://dx.doi.org/10.1128/mBio.01241-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073489PMC
June 2014

Correction: The composition and stability of the vaginal microbiota of normal pregnant women is different from that of non-pregnant women.

Microbiome 2014 Apr 15;2(1):10. Epub 2014 Apr 15.

Perinatology Research Branch, Program for Perinatal Research and Obstetrics, Division of Intramural Research, Eunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD and, Detroit, MI, USA.

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http://dx.doi.org/10.1186/2049-2618-2-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4022389PMC
April 2014

All hail reproducibility in microbiome research.

Microbiome 2014 Mar 7;2(1). Epub 2014 Mar 7.

Institute for Genome Sciences, University of Maryland School of Medicine, 801 W, Baltimore Street, Baltimore, MD 21201, USA.

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http://dx.doi.org/10.1186/2049-2618-2-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3975297PMC
March 2014

The composition and stability of the vaginal microbiota of normal pregnant women is different from that of non-pregnant women.

Microbiome 2014 Feb 3;2(1). Epub 2014 Feb 3.

Perinatology Research Branch, Program for Perinatal Research and Obstetrics, Division of Intramural Research, Eunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD and, Detroit, MI, USA.

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http://dx.doi.org/10.1186/2049-2618-2-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3916806PMC
February 2014

An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform.

Microbiome 2014 Feb 24;2(1). Epub 2014 Feb 24.

Institute for Genome Sciences, Department of Microbiology and Immunology, University of Maryland School of Medicine, 801 W, Baltimore Street, Baltimore, MD 21201, USA.

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http://dx.doi.org/10.1186/2049-2618-2-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3940169PMC
February 2014

Draft Genome Sequence of Synechococcus sp. Strain CB0101, Isolated From the Chesapeake Bay Estuary.

Genome Announc 2014 Jan 9;2(1). Epub 2014 Jan 9.

The Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Science, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1128/genomeA.01111-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3886946PMC
January 2014

Daily temporal dynamics of vaginal microbiota before, during and after episodes of bacterial vaginosis.

Microbiome 2013 Dec 2;1(1):29. Epub 2013 Dec 2.

Institute for Genome Sciences, University of Maryland School of Medicine, 801 W Baltimore Street, Baltimore, MD 21201, USA.

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http://dx.doi.org/10.1186/2049-2618-1-29DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3968321PMC
December 2013