Publications by authors named "Jacques Corbeil"

95Publications

A Lactococcal Phage Protein Promotes Viral Propagation and Alters the Host Proteomic Response During Infection.

Viruses 2020 07 24;12(8). Epub 2020 Jul 24.

Département de biochimie, de microbiologie, et de bio-informatique, Faculté des sciences et de génie and PROTEO, Québec City, QC G1V 0A6, Canada.

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http://dx.doi.org/10.3390/v12080797DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7472136PMC
July 2020

Phenotypic and Genetic Characterization of the Cheese Ripening Yeast .

Front Microbiol 2020 7;11:737. Epub 2020 May 7.

Department of Food Sciences and Nutrition, STELA Dairy Research Center, Institute of Nutrition and Functional Foods, Université Laval, Quebec City, QC, Canada.

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http://dx.doi.org/10.3389/fmicb.2020.00737DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7220993PMC
May 2020

Culture-enriched human gut microbiomes reveal core and accessory resistance genes.

Microbiome 2019 04 5;7(1):56. Epub 2019 Apr 5.

Centre de Recherche en Infectiologie de l'Université Laval, Axe Maladies Infectieuses et Immunitaires, Centre de Recherche du CHU de Québec-Université Laval, Québec City, Canada.

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http://dx.doi.org/10.1186/s40168-019-0669-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6451232PMC
April 2019

Interpretable genotype-to-phenotype classifiers with performance guarantees.

Sci Rep 2019 03 11;9(1):4071. Epub 2019 Mar 11.

Department of Computer Science and Software Engineering, Université Laval, Quebec, Canada.

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http://dx.doi.org/10.1038/s41598-019-40561-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6411721PMC
March 2019

Complete Genome Sequence of Escherichia coli Siphophage BRET.

Microbiol Resour Announc 2019 Jan 31;8(5). Epub 2019 Jan 31.

Département de biochimie, de microbiologie et de bio-informatique, Faculté des sciences et de génie, Université Laval, Québec, Canada.

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http://dx.doi.org/10.1128/MRA.01644-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6357644PMC
January 2019

Communities of Phytoplankton Viruses across the Transition Zone of the St. Lawrence Estuary.

Viruses 2018 11 27;10(12). Epub 2018 Nov 27.

Département de Biochimie, de Microbiologie et de Bio-Informatique, Université Laval, Québec City, QC G1V 0A6, Canada.

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http://www.mdpi.com/1999-4915/10/12/672
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http://dx.doi.org/10.3390/v10120672DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6316209PMC
November 2018

Human viral pathogens are pervasive in wastewater treatment center aerosols.

J Environ Sci (China) 2018 May 29;67:45-53. Epub 2017 Jul 29.

Université Laval, Pavillon Alexandre Vachon, 1045, ave de la Médecine, Québec, QC G1V0A6, Canada; CRIUCPQ, 2725, Chemin Sainte-Foy, Québec, QC G1V 4G5, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.jes.2017.07.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7128102PMC
May 2018

Draft Genome Sequence of a Sporulating and Motile Strain of Isolated from Water in Québec City, Canada.

Genome Announc 2017 Oct 19;5(42). Epub 2017 Oct 19.

Centre de Recherche en Infectiologie de l'Université Laval, Axe Maladies Infectieuses et Immunitaires, Centre de Recherche du CHU de Québec-Université Laval, Québec City, Canada

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http://dx.doi.org/10.1128/genomeA.01059-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5646393PMC
October 2017

Draft Genome Sequence of sp. nov. Strain CCRI-22766, Isolated from Coastal Estuarine Mud.

Genome Announc 2017 Oct 12;5(41). Epub 2017 Oct 12.

Centre de Recherche en Infectiologie, Axe Maladies Infectieuses et Immunitaires, and Centre de Recherche du CHU de Québec, Université Laval, Québec City, Québec, Canada

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http://dx.doi.org/10.1128/genomeA.01044-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5637497PMC
October 2017

Draft Genome Sequence of sp. nov. Strain CCRI-19649 Isolated from Surface Water.

Genome Announc 2017 Oct 5;5(40). Epub 2017 Oct 5.

Centre de Recherche en Infectiologie de l'Université Laval, Axe Maladies Infectieuses et Immunitaires, Centre de echerche du CHU de Québec-Université Laval, Québec City, Québec, Canada

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http://dx.doi.org/10.1128/genomeA.00901-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5629044PMC
October 2017

Phenetic Comparison of Prokaryotic Genomes Using k-mers.

Mol Biol Evol 2017 10;34(10):2716-2729

Centre de Recherche en Infectiologie, CHU de Québec-Université Laval, Quebec City, QC, Canada.

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https://academic.oup.com/mbe/article/34/10/2716/3976054
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http://dx.doi.org/10.1093/molbev/msx200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5850840PMC
October 2017

Global Mapping of the Macrophage-HIV-1 Transcriptome Reveals that Productive Infection Induces Remodeling of Host Cell DNA and Chromatin.

Sci Rep 2017 07 12;7(1):5238. Epub 2017 Jul 12.

Axe des Maladies Infectieuses et Immunitaires, Centre de Recherche du Centre Hospitalier Universitaire de Québec-Université Laval, Québec, Canada.

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http://dx.doi.org/10.1038/s41598-017-05566-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5507862PMC
July 2017

Genome-Wide Screen for Haploinsufficient Cell Size Genes in the Opportunistic Yeast .

G3 (Bethesda) 2017 02 9;7(2):355-360. Epub 2017 Feb 9.

Infectious Diseases Research Centre, Centre Hospitalier Universitaire (CHU) de Québec Research Center, Université Laval, Quebec City, Quebec, Canada

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http://dx.doi.org/10.1534/g3.116.037986DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5295585PMC
February 2017

Draft genome of the American Eel (Anguilla rostrata).

Mol Ecol Resour 2017 Jul 14;17(4):806-811. Epub 2016 Nov 14.

Département de Biologie, Institut de Biologie Intégrative et des Systèmes (IBIS), Université Laval, Pavillon Charles-Eugène-Marchand, Québec, QC, G1V 0A6, Canada.

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http://dx.doi.org/10.1111/1755-0998.12608DOI Listing
July 2017

Draft Genome Sequence of Criibacterium bergeronii gen. nov., sp. nov., Strain CCRI-22567T, Isolated from a Vaginal Sample from a Woman with Bacterial Vaginosis.

Genome Announc 2016 Sep 1;4(5). Epub 2016 Sep 1.

Centre de Recherche en Infectiologie de l'Université Laval, Axe Maladies Infectieuses et Immunitaires, Centre de Recherche du CHU de Québec-Université Laval, Québec City, Québec, Canada Département de Microbiologie, Infectiologie et d'Immunologie, Faculté de Médecine, Université Laval, Québec City, Québec, Canada

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http://dx.doi.org/10.1128/genomeA.00959-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5009990PMC
September 2016

Partial recovery of microbiomes after antibiotic treatment.

Gut Microbes 2016 09 5;7(5):428-34. Epub 2016 Aug 5.

a Centre de Recherche en Infectiologie, CHU de Québec-Université Laval , Québec , Canada.

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http://dx.doi.org/10.1080/19490976.2016.1216747DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5154369PMC
September 2016

Characterization of frataxin gene network in Friedreich's ataxia fibroblasts using the RNA-Seq technique.

Mitochondrion 2016 09 25;30:59-66. Epub 2016 Jun 25.

Axe neurosciences, Centre de recherche du CHUL, Université Laval, Québec City, QC, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.mito.2016.06.003DOI Listing
September 2016

Targeted Proteomics of Human Metapneumovirus in Clinical Samples and Viral Cultures.

Anal Chem 2015 Oct 29;87(20):10247-54. Epub 2015 Sep 29.

Department of Molecular Medicine, Department of Microbiology, Immunology and Infectious Diseases, Université Laval , Québec City, Québec, Canada G1V 0A6.

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http://dx.doi.org/10.1021/acs.analchem.5b01544DOI Listing
October 2015

Complete Genome Sequence of Streptococcus thermophilus SMQ-301, a Model Strain for Phage-Host Interactions.

Genome Announc 2015 May 21;3(3). Epub 2015 May 21.

Département de Biochimie, de Microbiologie, et de Bio-Informatique, Faculté des Sciences et de Génie, Groupe de Recherche en Écologie Buccale, Faculté de Médecine Dentaire, Félix d'Hérelle Reference Center for Bacterial Viruses, Université Laval, Québec, Canada

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http://dx.doi.org/10.1128/genomeA.00480-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4440953PMC
May 2015

A new Microviridae phage isolated from a failed biotechnological process driven by Escherichia coli.

Appl Environ Microbiol 2014 Nov 5;80(22):6992-7000. Epub 2014 Sep 5.

Département de Biochimie, de Microbiologie et de Bioinformatique, Faculté des Sciences et de Génie, Groupe de Recherche en Écologie Buccale, Faculté de Médecine Dentaire, Félix d'Hérelle Reference Center for Bacterial Viruses, Université Laval, Québec, Canada

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http://dx.doi.org/10.1128/AEM.01365-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4249002PMC
November 2014

Evolution of oseltamivir resistance mutations in Influenza A(H1N1) and A(H3N2) viruses during selection in experimentally infected mice.

Antimicrob Agents Chemother 2014 Nov 11;58(11):6398-405. Epub 2014 Aug 11.

Research Center in Infectious Diseases of the CHU of Québec and Laval University, Québec City, Quebec, Canada

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http://dx.doi.org/10.1128/AAC.02956-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4249448PMC
November 2014

Genomic characterization of a large outbreak of Legionella pneumophila serogroup 1 strains in Quebec City, 2012.

PLoS One 2014 8;9(8):e103852. Epub 2014 Aug 8.

Laboratoire de Santé Publique du Québec (LSPQ)/Institut National de Santé Publique du Québec, Québec, Canada; Centre de Recherche du Centre Hospitalier de l'Université de Montréal, Québec, Canada.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0103852PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4126679PMC
April 2015

Epitope mapping of the 2009 pandemic and the A/Brisbane/59/2007 seasonal (H1N1) influenza virus haemagglutinins using mAbs and escape mutants.

J Gen Virol 2014 Nov 30;95(Pt 11):2377-2389. Epub 2014 Jul 30.

Research Center in Infectious Diseases of the CHUQ-CHUL and Laval University, Québec City, QC, Canada.

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http://dx.doi.org/10.1099/vir.0.067819-0DOI Listing
November 2014

Improving the safety of Staphylococcus aureus polyvalent phages by their production on a Staphylococcus xylosus strain.

PLoS One 2014 25;9(7):e102600. Epub 2014 Jul 25.

Département de biochimie et de microbiologie, Faculté des sciences et de génie, Groupe de recherche en écologie buccale, Faculté de médecine dentaire, Félix d'Hérelle Reference Center for Bacterial Viruses, Université Laval, Québec, Canada.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0102600PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4111496PMC
April 2015

First Complete Genome Sequence of Staphylococcus xylosus, a Meat Starter Culture and a Host to Propagate Staphylococcus aureus Phages.

Genome Announc 2014 Jul 10;2(4). Epub 2014 Jul 10.

Département de Biochimie, de Microbiologie et de Bio-informatique, Faculté des Sciences et de Génie, Groupe de Recherche en Écologie Buccale, Faculté de Médecine Dentaire, Félix d'Hérelle Reference Center for Bacterial Viruses, Université Laval, Québec, Canada

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http://dx.doi.org/10.1128/genomeA.00671-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4110768PMC
July 2014

Gene amplification and point mutations in pyrimidine metabolic genes in 5-fluorouracil resistant Leishmania infantum.

PLoS Negl Trop Dis 2013 Nov 21;7(11):e2564. Epub 2013 Nov 21.

Centre de recherche en Infectiologie du CHU de Québec and Département de Microbiologie, Infectiologie et Immunologie, Université Laval, Québec City, Québec, Canada.

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http://dx.doi.org/10.1371/journal.pntd.0002564DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3836990PMC
November 2013

MHC-NP: predicting peptides naturally processed by the MHC.

J Immunol Methods 2013 Dec 18;400-401:30-6. Epub 2013 Oct 18.

Department of Computer Science and Software Engineering, Pavillon Adrien-Pouliot, 1065, av. De la Médecine, Université Laval, Québec, Québec, G1V 0A6, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.jim.2013.10.003DOI Listing
December 2013

Serotyping of Streptococcus pneumoniae based on capsular genes polymorphisms.

PLoS One 2013 24;8(9):e76197. Epub 2013 Sep 24.

Centre de Recherche en Infectiologie and Département de Microbiologie et Immunologie, Faculté de Médecine, Université Laval, Québec, Québec, Canada.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0076197PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3782451PMC
July 2014

Correlation between Clostridium difficile bacterial load, commercial real-time PCR cycle thresholds, and results of diagnostic tests based on enzyme immunoassay and cell culture cytotoxicity assay.

J Clin Microbiol 2013 Nov 21;51(11):3624-30. Epub 2013 Aug 21.

Infectious Diseases Research Center, Centre Hospitalier Universitaire de Québec-CHUL and Laval University, Québec, Canada.

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http://dx.doi.org/10.1128/JCM.01444-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3889743PMC
November 2013

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.

Gigascience 2013 Jul 22;2(1):10. Epub 2013 Jul 22.

Genome Center, UC, Davis, CA 95616, USA.

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http://dx.doi.org/10.1186/2047-217X-2-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3844414PMC
July 2013

Gene expression modulation and the molecular mechanisms involved in Nelfinavir resistance in Leishmania donovani axenic amastigotes.

Mol Microbiol 2013 Aug 5;89(3):565-82. Epub 2013 Jul 5.

Centre de Recherche en Infectiologie, Centre Hospitalier Universitaire de Québec - CHUL, Québec, Canada, G1V 4G2.

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http://dx.doi.org/10.1111/mmi.12298DOI Listing
August 2013

Learning a peptide-protein binding affinity predictor with kernel ridge regression.

BMC Bioinformatics 2013 Mar 5;14:82. Epub 2013 Mar 5.

Department of Computer Science and Software Engineering, Université Laval, Québec, Canada.

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http://dx.doi.org/10.1186/1471-2105-14-82DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3651388PMC
March 2013

Telomeric gene deletion and intrachromosomal amplification in antimony-resistant Leishmania.

Mol Microbiol 2013 Apr 6;88(1):189-202. Epub 2013 Mar 6.

Centre de Recherche en Infectiologie, Université Laval, Québec, Canada, G1V 4G2.

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http://dx.doi.org/10.1111/mmi.12178DOI Listing
April 2013

HIV downregulates interferon-stimulated genes in primary macrophages.

J Interferon Cytokine Res 2013 Feb 31;33(2):90-5. Epub 2012 Dec 31.

Department of Internal Medicine, School of Medicine, The Catholic University of Korea, Seoul, South Korea.

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http://dx.doi.org/10.1089/jir.2012.0052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3573720PMC
February 2013

Bacterial meningitis and pneumococcal serotype distribution in children in cameroon.

Pediatr Infect Dis J 2012 Oct;31(10):1084-7

Department of Pediatrics, University Hospitals of Geneva and Faculty of Medicine, Geneva, Switzerland.

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http://dx.doi.org/10.1097/INF.0b013e318260552dDOI Listing
October 2012

Building an HIV data mashup using Bio2RDF.

Brief Bioinform 2012 Jan 24;13(1):98-106. Epub 2011 Mar 24.

Department of Biology, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario, Canada K1S 5B6.

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http://dx.doi.org/10.1093/bib/bbr003DOI Listing
January 2012

TRAF6 and IRF7 control HIV replication in macrophages.

PLoS One 2011 28;6(11):e28125. Epub 2011 Nov 28.

Department of Molecular Medicine, Infectious Disease Research Center, CHUL Research Center and Laval University, Québec, Québec, Canada.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0028125PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3225375PMC
April 2012

Metagenomic analysis of stress genes in microbial mat communities from Antarctica and the High Arctic.

Appl Environ Microbiol 2012 Jan 11;78(2):549-59. Epub 2011 Nov 11.

Faculté de Médecine, Université Laval, Québec, QC, Canada.

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http://dx.doi.org/10.1128/AEM.06354-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3255749PMC
January 2012

Endonucleases: tools to correct the dystrophin gene.

J Gene Med 2011 Oct;13(10):522-37

Unité de Recherche de Recherche en Génétique Humaine, Centre de Recherche de CHUL, CHUQ, Faculté de Médecine, Université Laval, Québec, Canada.

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http://dx.doi.org/10.1002/jgm.1611DOI Listing
October 2011

Gln-tRNAGln synthesis in a dynamic transamidosome from Helicobacter pylori, where GluRS2 hydrolyzes excess Glu-tRNAGln.

Nucleic Acids Res 2011 Nov 3;39(21):9306-15. Epub 2011 Aug 3.

Département de Biochimie, de Microbiologie et de Bio-informatique, PROTEO et IBIS, Université Laval, 1045 av de la Médecine, Québec, Québec, Canada.

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http://dx.doi.org/10.1093/nar/gkr619DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3241645PMC
November 2011

Gene expression profiling and molecular characterization of antimony resistance in Leishmania amazonensis.

PLoS Negl Trop Dis 2011 May 24;5(5):e1167. Epub 2011 May 24.

Departamento de Fisiologia e Biofísica, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brasil.

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http://dx.doi.org/10.1371/journal.pntd.0001167DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3101167PMC
May 2011

A general framework for analyzing data from two short time-series microarray experiments.

IEEE/ACM Trans Comput Biol Bioinform 2011 Jan-Mar;8(1):14-26

Centre for Intelligent Machines, McGill University, McConnell Engineering Building, Room 444, 3480, University Street, Montreal, QC H3A 2A7, Canada.

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http://dx.doi.org/10.1109/TCBB.2009.51DOI Listing
February 2011

Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies.

J Comput Biol 2010 Nov 20;17(11):1519-33. Epub 2010 Oct 20.

Département de Médecine Moléculaire, Université Laval, Québec, Canada.

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http://www.liebertpub.com/doi/10.1089/cmb.2009.0238
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http://dx.doi.org/10.1089/cmb.2009.0238DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3119603PMC
November 2010

Identification and biophysical assessment of the molecular recognition mechanisms between the human haemopoietic cell kinase Src homology domain 3 and ALG-2-interacting protein X.

Biochem J 2010 Oct;431(1):93-102

State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, 155 Yang Qiao Xi Lu, Fuzhou, Fujian 350002, China.

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http://dx.doi.org/10.1042/BJ20100314DOI Listing
October 2010

Characterization of cytokine gene expression associated with noninfectious human immunodeficiency virus retinopathy in human autopsy eyes.

Retina 2010 Jun;30(6):952-7

Jacobs Retina Center, Shiley Eye Center, Department of Ophthalmology, University of California, San Diego, La Jolla, California 92093, USA.

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http://dx.doi.org/10.1097/IAE.0b013e3181c700f8DOI Listing
June 2010

Whole-genome comparative RNA expression profiling of axenic and intracellular amastigote forms of Leishmania infantum.

Mol Biochem Parasitol 2009 May 15;165(1):32-47. Epub 2009 Jan 15.

Research Centre in Infectious Disease, CHUL Research Centre, Quebec, Canada G1V 4G2.

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http://dx.doi.org/10.1016/j.molbiopara.2008.12.012DOI Listing
May 2009

HIV-1 coreceptor usage prediction without multiple alignments: an application of string kernels.

Retrovirology 2008 Dec 4;5:110. Epub 2008 Dec 4.

Centre de recherche du centre hospitalier de l'Université Laval, Québec, Canada.

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http://dx.doi.org/10.1186/1742-4690-5-110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2637298PMC
December 2008

The transcription factor Egr1 regulates the HIF-1alpha gene during hypoxia.

Mol Carcinog 2009 Jan;48(1):38-44

Centre de Recherche du Centre Hospitalier Université Laval, Centre de Génomique, Université Laval, Québec, Canada.

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http://dx.doi.org/10.1002/mc.20454DOI Listing
January 2009

R5 and X4 HIV viruses differentially modulate host gene expression in resting CD4+ T cells.

AIDS Res Hum Retroviruses 2008 Mar;24(3):485-93

Infectious Disease Research Center, CHUL Research Center and Laval University, Québec, Canada.

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http://dx.doi.org/10.1089/aid.2007.0120DOI Listing
March 2008

Enhanced antiproliferative effects of alkoxyalkyl esters of cidofovir in human cervical cancer cells in vitro.

Mol Cancer Ther 2006 Jan;5(1):156-9

Department of Medicine, University of California, San Diego, Mail Code 0676, 9500 Gilman Drive, La Jolla, 92093-0676, USA.

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http://dx.doi.org/10.1158/1535-7163.MCT-05-0200DOI Listing
January 2006

Methamphetamine stimulates interferon inducible genes in HIV infected brain.

J Neuroimmunol 2005 Dec 24;170(1-2):158-71. Epub 2005 Oct 24.

Department of Psychiatry, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0603, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S01655728050038
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http://dx.doi.org/10.1016/j.jneuroim.2005.09.009DOI Listing
December 2005

Comparative gene expression analysis of blood and brain provides concurrent validation of SELENBP1 up-regulation in schizophrenia.

Proc Natl Acad Sci U S A 2005 Oct 13;102(43):15533-8. Epub 2005 Oct 13.

Center for Behavioral Genomics, University of California at San Diego, La Jolla, CA 92093, USA.

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http://dx.doi.org/10.1073/pnas.0507666102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1266138PMC
October 2005

Interferon gene expression following HIV type 1 infection of monocyte-derived macrophages.

AIDS Res Hum Retroviruses 2004 Nov;20(11):1210-22

Department of Pathology, University of California San Diego, La Jolla, California 92093-0679, USA.

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http://dx.doi.org/10.1089/aid.2004.20.1210DOI Listing
November 2004

Mitogen-activated protein kinase pathways defend against bacterial pore-forming toxins.

Proc Natl Acad Sci U S A 2004 Jul 15;101(30):10995-1000. Epub 2004 Jul 15.

Section of Cell and Developmental Biology, University of California at San Diego, La Jolla, 92093, USA.

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http://dx.doi.org/10.1073/pnas.0404073101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC503732PMC
July 2004

Gene expression profiling detects patterns of human macrophage responses following Mycobacterium tuberculosis infection.

FEMS Immunol Med Microbiol 2003 Nov;39(2):163-72

University of California, San Diego, Department of Medicine 0640, 9500 Gilman Drive, La Jolla, CA 92093-0640, USA.

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http://dx.doi.org/10.1016/S0928-8244(03)00223-2DOI Listing
November 2003

Modulation of gene expression in Leishmania drug resistant mutants as determined by targeted DNA microarrays.

Nucleic Acids Res 2003 Oct;31(20):5886-96

Centre de Recherche en Infectiologie du Centre de Recherche du CHUL and Division de Microbiologie, Faculté de Médecine, Université Laval, Québec, Canada.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC219483PMC
http://dx.doi.org/10.1093/nar/gkg806DOI Listing
October 2003

2HAPI: a microarray data analysis system.

Bioinformatics 2003 Jul;19(11):1443-5

San Diego Supercomputer Center, Department of Biology, University of California, San Diego, 9500 Gilman Drive, San Diego, CA 92093-0537, USA.

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http://dx.doi.org/10.1093/bioinformatics/btg169DOI Listing
July 2003

A new perspective on V3 phenotype prediction.

AIDS Res Hum Retroviruses 2003 Feb;19(2):145-9

University of California, San Diego, La Jolla, California 92093, USA.

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http://dx.doi.org/10.1089/088922203762688658DOI Listing
February 2003

Surface CD4 expression modulated by a cellular factor induced by HIV type 1 infection.

AIDS Res Hum Retroviruses 2003 Feb;19(2):117-23

Department of Medicine, University of California San Diego, La Jolla, California 92093-0679, USA.

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http://dx.doi.org/10.1089/088922203762688621DOI Listing
February 2003

Effect of micromechanical stimulations on osteoblasts: development of a device simulating the mechanical situation at the bone-implant interface.

J Biomech 2003 Jan;36(1):131-5

Bone Bioengineering Group, Laboratory of Orthopaedic Research, Institute for Biomedical Engineering, Swiss Federal Institute of Technology, Lausanne, Switzerland. dominique.pioletti@

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http://dx.doi.org/10.1016/s0021-9290(02)00301-9DOI Listing
January 2003

Large-scale gene expression analysis of osteoblasts cultured on three different Ti-6Al-4V surface treatments.

Biomaterials 2002 Nov;23(21):4193-202

Bone Bioengineering Group, Institute for Biomedical Engineering, Swiss Federal Institute of Technology, Lausanne, Switzerland.

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http://dx.doi.org/10.1016/s0142-9612(02)00161-8DOI Listing
November 2002

Gene expression analysis of osteoblastic cells contacted by orthopedic implant particles.

J Biomed Mater Res 2002 Sep;61(3):408-20

Department of Bioengineering, University of California San Diego, 9500 Gilman Drive, La Jolla 92093, USA.

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http://dx.doi.org/10.1002/jbm.10218DOI Listing
September 2002