Jacqueline Batley

Jacqueline Batley

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Jacqueline Batley

Publications by authors named "Jacqueline Batley"

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Pangenomics Comes of Age: From Bacteria to Plant and Animal Applications.

Trends Genet 2020 Feb 24;36(2):132-145. Epub 2019 Dec 24.

School of Biological Sciences and Institute of Agriculture, The University of Western Australia, Crawley, WA, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.tig.2019.11.006DOI Listing
February 2020

Trait associations in the pangenome of pigeon pea (Cajanus cajan).

Plant Biotechnol J 2020 Feb 5. Epub 2020 Feb 5.

International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, 502324, India.

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http://dx.doi.org/10.1111/pbi.13354DOI Listing
February 2020

Exploring the application of wild species for crop improvement in a changing climate.

Curr Opin Plant Biol 2020 Feb 3. Epub 2020 Feb 3.

School of Biological Sciences and Institute of Agriculture, University of Western Australia, Crawley 6009, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.pbi.2019.12.013DOI Listing
February 2020

Genome-Wide Mining of Disease Resistance Gene Analogs Using Conserved Domains.

Methods Mol Biol 2020 ;2107:365-375

School of Biological Sciences, University of Western Australia, Crawley, WA, Australia.

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http://dx.doi.org/10.1007/978-1-0716-0235-5_20DOI Listing
January 2020

"Doubled-haploid" allohexaploid Brassica lines lose fertility and viability and accumulate genetic variation due to genomic instability.

Chromosoma 2019 12 4;128(4):521-532. Epub 2019 Aug 4.

Department of Plant Breeding, Research Centre for Biosystems, Land Use and Nutrition, Justus Liebig University, Heinrich-Buff-Ring 26-32, 35392, Giessen, Germany.

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http://dx.doi.org/10.1007/s00412-019-00720-wDOI Listing
December 2019

DNA Methylation: Toward Crop Disease Resistance Improvement.

Trends Plant Sci 2019 Dec 8;24(12):1137-1150. Epub 2019 Oct 8.

School of Biological Sciences, University of Western Australia, Perth, WA, 6009, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.tplants.2019.08.007DOI Listing
December 2019

Epigenetics: Potentials and Challenges in Crop Breeding.

Mol Plant 2019 10 18;12(10):1309-1311. Epub 2019 Sep 18.

School of Biological Sciences, University of Western Australia, Perth, WA, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.molp.2019.09.006DOI Listing
October 2019

Whole Genome Diversity, Population Structure, and Linkage Disequilibrium Analysis of Chickpea ( L.) Genotypes Using Genome-Wide DArTseq-Based SNP Markers.

Genes (Basel) 2019 09 4;10(9). Epub 2019 Sep 4.

Department of Agronomy & Plant Breeding, College of Agriculture, Sanandaj Branch, Islamic Azad University, Sanandaj, P.O. Box:618, Iran.

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http://dx.doi.org/10.3390/genes10090676DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6770975PMC
September 2019

Characterization of disease resistance genes in the Brassica napus pangenome reveals significant structural variation.

Plant Biotechnol J 2019 Sep 25. Epub 2019 Sep 25.

UWA School of Biological Sciences and the UWA Institute of Agriculture, Faculty of Science, The University of Western Australia, Crawley, WA, Australia.

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http://dx.doi.org/10.1111/pbi.13262DOI Listing
September 2019

Inherited allelic variants and novel karyotype changes influence fertility and genome stability in Brassica allohexaploids.

New Phytol 2019 07 24;223(2):965-978. Epub 2019 Apr 24.

Department of Plant Breeding, Justus Liebig University, Heinrich-Buff-Ring 26-32, Giessen, 35392, Germany.

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http://dx.doi.org/10.1111/nph.15804DOI Listing
July 2019

Transcriptomic comparison between developing seeds of yellow- and black-seeded Brassica napus reveals that genes influence seed quality.

BMC Plant Biol 2019 May 16;19(1):203. Epub 2019 May 16.

Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology, Yangzhou University, Yangzhou, 225009, China.

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http://dx.doi.org/10.1186/s12870-019-1821-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6524335PMC
May 2019

Revolution in Genotyping Platforms for Crop Improvement.

Adv Biochem Eng Biotechnol 2018;164:37-52

School of Biological Sciences, University of Western Australia, Crawley, WA, Australia.

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http://dx.doi.org/10.1007/10_2017_47DOI Listing
April 2019

Variation in abundance of predicted resistance genes in the Brassica oleracea pangenome.

Plant Biotechnol J 2019 04 31;17(4):789-800. Epub 2018 May 31.

School of Biological Sciences and Institute of Agriculture, The University of Western Australia, Crawley, WA, Australia.

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http://dx.doi.org/10.1111/pbi.13015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6419861PMC
April 2019

CropSNPdb: a database of SNP array data for Brassica crops and hexaploid bread wheat.

Plant J 2019 04 28;98(1):142-152. Epub 2019 Jan 28.

School of Biological Sciences and Institute of Agriculture, The University of Western Australia, Perth, WA, 6009, Australia.

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http://dx.doi.org/10.1111/tpj.14194DOI Listing
April 2019

A differential k-mer analysis pipeline for comparing RNA-Seq transcriptome and meta-transcriptome datasets without a reference.

Funct Integr Genomics 2019 Mar 27;19(2):363-371. Epub 2018 Nov 27.

School of Biological Sciences and Institute of Agriculture, The University of Western Australia, Perth, WA, 6009, Australia.

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http://dx.doi.org/10.1007/s10142-018-0647-3DOI Listing
March 2019

Regulation of a novel Fusarium cytokinin in Fusarium pseudograminearum.

Fungal Biol 2019 03 7;123(3):255-266. Epub 2019 Jan 7.

Commonwealth Scientific and Industrial Research Organisation, Agriculture and Food, Queensland Bioscience Precinct, St Lucia, Brisbane, 4067, Australia; Department of Agricultural, Food and Environmental Sciences, University of Perugia, Perugia, 06121, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.funbio.2018.12.009DOI Listing
March 2019

Wild Origins of Macadamia Domestication Identified Through Intraspecific Chloroplast Genome Sequencing.

Front Plant Sci 2019 21;10:334. Epub 2019 Mar 21.

School of Biological Sciences and Institute of Agriculture, The University of Western Australia, Crawley, WA, Australia.

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http://dx.doi.org/10.3389/fpls.2019.00334DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6438079PMC
March 2019

Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies.

N Biotechnol 2019 Jan 8;48:12-19. Epub 2018 Mar 8.

Institute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, 783 71 Olomouc, Czech Republic. Electronic address:

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http://dx.doi.org/10.1016/j.nbt.2018.03.003DOI Listing
January 2019

Bias in resistance gene prediction due to repeat masking.

Nat Plants 2018 10 1;4(10):762-765. Epub 2018 Oct 1.

School of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, Western Australia, Australia.

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http://dx.doi.org/10.1038/s41477-018-0264-0DOI Listing
October 2018

Shifting the limits in wheat research and breeding using a fully annotated reference genome.

Authors:
Rudi Appels Kellye Eversole Catherine Feuillet Beat Keller Jane Rogers Nils Stein Curtis J Pozniak Nils Stein Frédéric Choulet Assaf Distelfeld Kellye Eversole Jesse Poland Jane Rogers Gil Ronen Andrew G Sharpe Curtis Pozniak Gil Ronen Nils Stein Omer Barad Kobi Baruch Frédéric Choulet Gabriel Keeble-Gagnère Martin Mascher Andrew G Sharpe Gil Ben-Zvi Ambre-Aurore Josselin Nils Stein Martin Mascher Axel Himmelbach Frédéric Choulet Gabriel Keeble-Gagnère Martin Mascher Jane Rogers François Balfourier Juan Gutierrez-Gonzalez Matthew Hayden Ambre-Aurore Josselin ChuShin Koh Gary Muehlbauer Raj K Pasam Etienne Paux Curtis J Pozniak Philippe Rigault Andrew G Sharpe Josquin Tibbits Vijay Tiwari Frédéric Choulet Gabriel Keeble-Gagnère Martin Mascher Ambre-Aurore Josselin Jane Rogers Manuel Spannagl Frédéric Choulet Daniel Lang Heidrun Gundlach Georg Haberer Gabriel Keeble-Gagnère Klaus F X Mayer Danara Ormanbekova Etienne Paux Verena Prade Hana Šimková Thomas Wicker Frédéric Choulet Manuel Spannagl David Swarbreck Hélène Rimbert Marius Felder Nicolas Guilhot Heidrun Gundlach Georg Haberer Gemy Kaithakottil Jens Keilwagen Daniel Lang Philippe Leroy Thomas Lux Klaus F X Mayer Sven Twardziok Luca Venturini Rudi Appels Hélène Rimbert Frédéric Choulet Angéla Juhász Gabriel Keeble-Gagnère Frédéric Choulet Manuel Spannagl Daniel Lang Michael Abrouk Georg Haberer Gabriel Keeble-Gagnère Klaus F X Mayer Thomas Wicker Frédéric Choulet Thomas Wicker Heidrun Gundlach Daniel Lang Manuel Spannagl Daniel Lang Manuel Spannagl Rudi Appels Iris Fischer Cristobal Uauy Philippa Borrill Ricardo H Ramirez-Gonzalez Rudi Appels Dominique Arnaud Smahane Chalabi Boulos Chalhoub Frédéric Choulet Aron Cory Raju Datla Mark W Davey Matthew Hayden John Jacobs Daniel Lang Stephen J Robinson Manuel Spannagl Burkhard Steuernagel Josquin Tibbits Vijay Tiwari Fred van Ex Brande B H Wulff Curtis J Pozniak Stephen J Robinson Andrew G Sharpe Aron Cory Moussa Benhamed Etienne Paux Abdelhafid Bendahmane Lorenzo Concia David Latrasse Jane Rogers John Jacobs Michael Alaux Rudi Appels Jan Bartoš Arnaud Bellec Hélène Berges Jaroslav Doležel Catherine Feuillet Zeev Frenkel Bikram Gill Abraham Korol Thomas Letellier Odd-Arne Olsen Hana Šimková Kuldeep Singh Miroslav Valárik Edwin van der Vossen Sonia Vautrin Song Weining Abraham Korol Zeev Frenkel Tzion Fahima Vladimir Glikson Dina Raats Jane Rogers Vijay Tiwari Bikram Gill Etienne Paux Jesse Poland Jaroslav Doležel Jarmila Číhalíková Hana Šimková Helena Toegelová Jan Vrána Pierre Sourdille Benoit Darrier Rudi Appels Manuel Spannagl Daniel Lang Iris Fischer Danara Ormanbekova Verena Prade Delfina Barabaschi Luigi Cattivelli Pilar Hernandez Sergio Galvez Hikmet Budak Burkhard Steuernagel Jonathan D G Jones Kamil Witek Brande B H Wulff Guotai Yu Ian Small Joanna Melonek Ruonan Zhou Angéla Juhász Tatiana Belova Rudi Appels Odd-Arne Olsen Kostya Kanyuka Robert King Kirby Nilsen Sean Walkowiak Curtis J Pozniak Richard Cuthbert Raju Datla Ron Knox Krysta Wiebe Daoquan Xiang Antje Rohde Timothy Golds Jaroslav Doležel Jana Čížková Josquin Tibbits Hikmet Budak Bala Ani Akpinar Sezgi Biyiklioglu Gary Muehlbauer Jesse Poland Liangliang Gao Juan Gutierrez-Gonzalez Amidou N'Daiye Jaroslav Doležel Hana Šimková Jarmila Číhalíková Marie Kubaláková Jan Šafář Jan Vrána Hélène Berges Arnaud Bellec Sonia Vautrin Michael Alaux Françoise Alfama Anne-Françoise Adam-Blondon Raphael Flores Claire Guerche Thomas Letellier Mikaël Loaec Hadi Quesneville Curtis J Pozniak Andrew G Sharpe Sean Walkowiak Hikmet Budak Janet Condie Jennifer Ens ChuShin Koh Ron Maclachlan Yifang Tan Thomas Wicker Frédéric Choulet Etienne Paux Adriana Alberti Jean-Marc Aury François Balfourier Valérie Barbe Arnaud Couloux Corinne Cruaud Karine Labadie Sophie Mangenot Patrick Wincker Bikram Gill Gaganpreet Kaur Mingcheng Luo Sunish Sehgal Kuldeep Singh Parveen Chhuneja Om Prakash Gupta Suruchi Jindal Parampreet Kaur Palvi Malik Priti Sharma Bharat Yadav Nagendra K Singh JitendraP Khurana Chanderkant Chaudhary Paramjit Khurana Vinod Kumar Ajay Mahato Saloni Mathur Amitha Sevanthi Naveen Sharma Ram Sewak Tomar Jane Rogers John Jacobs Michael Alaux Arnaud Bellec Hélène Berges Jaroslav Doležel Catherine Feuillet Zeev Frenkel Bikram Gill Abraham Korol Edwin van der Vossen Sonia Vautrin Bikram Gill Gaganpreet Kaur Mingcheng Luo Sunish Sehgal Jan Bartoš Kateřina Holušová Ondřej Plíhal Matthew D Clark Darren Heavens George Kettleborough Jon Wright Miroslav Valárik Michael Abrouk Barbora Balcárková Kateřina Holušová Yuqin Hu Mingcheng Luo Elena Salina Nikolai Ravin Konstantin Skryabin Alexey Beletsky Vitaly Kadnikov Andrey Mardanov Michail Nesterov Andrey Rakitin Ekaterina Sergeeva Hirokazu Handa Hiroyuki Kanamori Satoshi Katagiri Fuminori Kobayashi Shuhei Nasuda Tsuyoshi Tanaka Jianzhong Wu Rudi Appels Matthew Hayden Gabriel Keeble-Gagnère Philippe Rigault Josquin Tibbits Odd-Arne Olsen Tatiana Belova Federica Cattonaro Min Jiumeng Karl Kugler Klaus F X Mayer Matthias Pfeifer Simen Sandve Xu Xun Bujie Zhan Hana Šimková Michael Abrouk Jacqueline Batley Philipp E Bayer David Edwards Satomi Hayashi Helena Toegelová Zuzana Tulpová Paul Visendi Song Weining Licao Cui Xianghong Du Kewei Feng Xiaojun Nie Wei Tong Le Wang Philippa Borrill Heidrun Gundlach Sergio Galvez Gemy Kaithakottil Daniel Lang Thomas Lux Martin Mascher Danara Ormanbekova Verena Prade Ricardo H Ramirez-Gonzalez Manuel Spannagl Nils Stein Cristobal Uauy Luca Venturini Nils Stein Rudi Appels Kellye Eversole Jane Rogers Philippa Borrill Luigi Cattivelli Frédéric Choulet Pilar Hernandez Kostya Kanyuka Daniel Lang Martin Mascher Kirby Nilsen Etienne Paux Curtis J Pozniak Ricardo H Ramirez-Gonzalez Hana Šimková Ian Small Manuel Spannagl David Swarbreck Cristobal Uauy

Science 2018 08 16;361(6403). Epub 2018 Aug 16.

John Innes Centre, Crop Genetics, Norwich Research Park, Norwich NR4 7UH, UK.

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http://dx.doi.org/10.1126/science.aar7191DOI Listing
August 2018

Genetic and Molecular Regulation of Seed Storage Proteins (SSPs) to Improve Protein Nutritional Value of Oilseed Rape () Seeds.

Front Plant Sci 2018 2;9:890. Epub 2018 Jul 2.

School of Biological Sciences, The University of Western Australia, Crawley, WA, Australia.

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http://dx.doi.org/10.3389/fpls.2018.00890DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6036235PMC
July 2018

Copy number variation and disease resistance in plants.

Theor Appl Genet 2017 Dec 17;130(12):2479-2490. Epub 2017 Oct 17.

School of Biological Sciences and Institute of Agriculture, University of Western Australia, Crawley, WA, 6009, Australia.

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http://dx.doi.org/10.1007/s00122-017-2993-2DOI Listing
December 2017

RNA-Seq and metabolic flux analysis of Tetraselmis sp. M8 during nitrogen starvation reveals a two-stage lipid accumulation mechanism.

Bioresour Technol 2017 Nov 6;244(Pt 2):1281-1293. Epub 2017 Jun 6.

School of Agriculture and Food Sciences, The University of Queensland, Brisbane 4072, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.biortech.2017.06.003DOI Listing
November 2017

Towards CRISPR/Cas crops - bringing together genomics and genome editing.

New Phytol 2017 Nov 1;216(3):682-698. Epub 2017 Aug 1.

School of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, WA, 6009, Australia.

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http://dx.doi.org/10.1111/nph.14702DOI Listing
November 2017

Current Status and Challenges in Identifying Disease Resistance Genes in .

Front Plant Sci 2017 6;8:1788. Epub 2017 Nov 6.

School of Biological Sciences, University of Western Australia, Perth, WA, Australia.

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http://dx.doi.org/10.3389/fpls.2017.01788DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5681527PMC
November 2017

An advanced reference genome of Trifolium subterraneum L. reveals genes related to agronomic performance.

Plant Biotechnol J 2017 Aug 23;15(8):1034-1046. Epub 2017 Mar 23.

Institute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, Olomouc, Czech Republic.

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http://dx.doi.org/10.1111/pbi.12697DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5506647PMC
August 2017

Neodiversification of homeologous CLAVATA1-like receptor kinase genes in soybean leads to distinct developmental outcomes.

Sci Rep 2017 08 21;7(1):8878. Epub 2017 Aug 21.

Centre for Integrative Legume Research, School of Agriculture and Food Sciences, The University of Queensland, St Lucia, Brisbane, QLD, 4072, Australia.

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http://dx.doi.org/10.1038/s41598-017-08252-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5566472PMC
August 2017

The pangenome of hexaploid bread wheat.

Plant J 2017 Jun 5;90(5):1007-1013. Epub 2017 Apr 5.

School of Agriculture and Food Sciences, University of Queensland, Brisbane, Australia.

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http://dx.doi.org/10.1111/tpj.13515DOI Listing
June 2017

Improvements in Genomic Technologies: Application to Crop Genomics.

Trends Biotechnol 2017 06 9;35(6):547-558. Epub 2017 Mar 9.

School of Plant Biology, the University of Western Australia, Perth, WA, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.tibtech.2017.02.009DOI Listing
June 2017

Segregation for fertility and meiotic stability in novel Brassica allohexaploids.

Theor Appl Genet 2017 Apr 17;130(4):767-776. Epub 2017 Jan 17.

School of Agriculture and Food Sciences, University of Queensland, Brisbane, QLD, 4072, Australia.

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http://dx.doi.org/10.1007/s00122-016-2850-8DOI Listing
April 2017

A user guide to the Brassica 60K Illumina Infinium™ SNP genotyping array.

Theor Appl Genet 2017 Apr 20;130(4):621-633. Epub 2017 Feb 20.

Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, S7N0X2, Canada.

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http://dx.doi.org/10.1007/s00122-016-2849-1DOI Listing
April 2017

Genome Analysis Identified Novel Candidate Genes for Ascochyta Blight Resistance in Chickpea Using Whole Genome Re-sequencing Data.

Front Plant Sci 2017 17;8:359. Epub 2017 Mar 17.

School of Agriculture, Food and Wine, University of Adelaide, AdelaideSA, Australia; South Australian Research and Development Institute, UrrbraeSA, Australia.

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http://dx.doi.org/10.3389/fpls.2017.00359DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5355423PMC
March 2017

Genotyping-by-sequencing approaches to characterize crop genomes: choosing the right tool for the right application.

Plant Biotechnol J 2017 02;15(2):149-161

School of Plant Biology and Institute of Agriculture, University of Western Australia, Perth, WA, Australia.

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http://dx.doi.org/10.1111/pbi.12645DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5258866PMC
February 2017

Genome-Wide Association Study of Genetic Control of Seed Fatty Acid Biosynthesis in .

Front Plant Sci 2016 20;7:2062. Epub 2017 Jan 20.

School of Plant Biology, University of Western Australia Perth, WA, Australia.

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http://dx.doi.org/10.3389/fpls.2016.02062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5247464PMC
January 2017

The Genome of a Southern Hemisphere Seagrass Species (Zostera muelleri).

Plant Physiol 2016 09 3;172(1):272-83. Epub 2016 Jul 3.

School of Agriculture and Food Sciences, University of Queensland, St Lucia, Queensland 4072, Australia (H.T.L., A.A.G., R.R.K., J.B., D.E.);School of Plant Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (H.T.L., P.E.B., C.-K.K.C., J.B., G.A.K., D.E.);State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (Y.J.);Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602 (Y.J., A.H.P.);Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou 350002, China (H.T.); andPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, New South Wales 2007, Australia (G.S., A.W.D.L., P.J.R.)

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http://dx.doi.org/10.1104/pp.16.00868DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5074622PMC
September 2016

BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes.

Plant Biotechnol J 2016 07 23;14(7):1523-31. Epub 2016 Jan 23.

Institute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, Olomouc, Czech Republic.

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http://dx.doi.org/10.1111/pbi.12513DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5066648PMC
July 2016

Molecular-cytogenetic characterization of C-genome chromosome substitution lines in Brassica juncea (L.) Czern and Coss.

Theor Appl Genet 2016 Jun 25;129(6):1153-66. Epub 2016 Feb 25.

Department of Plant Breeding and Genetics, DBT Centre of Excellence on Brassicas, Punjab Agricultural University, Ludhiana, 141001, India.

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http://dx.doi.org/10.1007/s00122-016-2692-4DOI Listing
June 2016

High-throughput FACS-based mutant screen identifies a gain-of-function allele of the Fusarium graminearum adenylyl cyclase causing deoxynivalenol over-production.

Fungal Genet Biol 2016 May 27;90:1-11. Epub 2016 Feb 27.

CSIRO Agriculture, Queensland Bioscience Precinct, 306 Carmody Road, St Lucia, Brisbane, Queensland 4067, Australia.

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https://linkinghub.elsevier.com/retrieve/pii/S10871845163001
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http://dx.doi.org/10.1016/j.fgb.2016.02.005DOI Listing
May 2016

Towards plant pangenomics.

Plant Biotechnol J 2016 Apr 23;14(4):1099-105. Epub 2015 Nov 23.

School of Agriculture and Food Sciences, University of Queensland, St. Lucia, QLD, Australia.

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http://dx.doi.org/10.1111/pbi.12499DOI Listing
April 2016

The application of genomics and bioinformatics to accelerate crop improvement in a changing climate.

Curr Opin Plant Biol 2016 04 27;30:78-81. Epub 2016 Feb 27.

School of Plant Biology and Institute of Agriculture, University of Western Australia, Crawley 6009, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.pbi.2016.02.002DOI Listing
April 2016

The Fdb3 transcription factor of the Fusarium Detoxification of Benzoxazolinone gene cluster is required for MBOA but not BOA degradation in Fusarium pseudograminearum.

Fungal Genet Biol 2016 Mar 29;88:44-53. Epub 2016 Jan 29.

Commonwealth Scientific and Industrial Research Organization (CSIRO) Agriculture, Queensland Bioscience Precinct, Brisbane, Queensland 4067, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.fgb.2016.01.015DOI Listing
March 2016

Centromere Locations in Brassica A and C Genomes Revealed Through Half-Tetrad Analysis.

Genetics 2016 Feb 27;202(2):513-23. Epub 2015 Nov 27.

School of Plant Biology and The University of Western Australia (UWA) Institute of Agriculture, The UWA, Crawley 6009, Perth, Australia Natural Capital and Plant Health, Royal Botanic Gardens Kew, Ardingly, West Sussex, RH17 6TN, United Kingdom

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http://dx.doi.org/10.1534/genetics.115.183210DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4788232PMC
February 2016

Type B Heterotrimeric G Protein γ-Subunit Regulates Auxin and ABA Signaling in Tomato.

Plant Physiol 2016 Feb 14;170(2):1117-34. Epub 2015 Dec 14.

Plant Genetic Engineering Laboratory (G.S., Y.T., J.R.B.) and Centre for Integrative Legume Research (S.H., J.B.), School of Agriculture and Food Sciences, University of Queensland, Brisbane, Queensland 4072, Australia; andInstituto de Horticultura Subtropical y Mediterranea La Mayora, Consejo Superior de Investigaciones Científicas, Universidad de Malaga, Experimental Station La Mayora, 29750 Algarrobo-Costa, Malaga, Spain (C.L.-E.)

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http://dx.doi.org/10.1104/pp.15.01675DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4734580PMC
February 2016

An efficient approach to BAC based assembly of complex genomes.

Plant Methods 2016 20;12. Epub 2016 Jan 20.

School of Agriculture and Food Science, University of Queensland, Brisbane, QLD 4072 Australia ; School of Plant Biology, University of Western Australia, Perth, WA 6009 Australia.

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http://dx.doi.org/10.1186/s13007-016-0107-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4719536PMC
January 2016

Degradation of the benzoxazolinone class of phytoalexins is important for virulence of Fusarium pseudograminearum towards wheat.

Mol Plant Pathol 2015 Dec 15;16(9):946-62. Epub 2015 Apr 15.

Commonwealth Scientific and Industrial Research Organization (CSIRO) Agriculture Flagship, Queensland Bioscience Precinct, Level 4, 306 Carmody Road, St. Lucia, Brisbane, Qld, 4067, Australia.

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http://dx.doi.org/10.1111/mpp.12250DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6638480PMC
December 2015

Identification of Putative Candidate Genes for Water Stress Tolerance in Canola (Brassica napus).

Front Plant Sci 2015 27;6:1058. Epub 2015 Nov 27.

Centre for Plant Genetics and Breeding, School of Plant Biology, Faculty of Science and The UWA Institute of Agriculture, The University of Western Australia Perth, WA, Australia.

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http://dx.doi.org/10.3389/fpls.2015.01058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4661274PMC
December 2015

A γ-lactamase from cereal infecting Fusarium spp. catalyses the first step in the degradation of the benzoxazolinone class of phytoalexins.

Fungal Genet Biol 2015 Oct 18;83:1-9. Epub 2015 Aug 18.

Commonwealth Scientific and Industrial Research Organization (CSIRO) Agriculture Flagship, Queensland Bioscience Precinct, Brisbane, Queensland 4067, Australia.

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http://dx.doi.org/10.1016/j.fgb.2015.08.005DOI Listing
October 2015

High-throughput genotyping for species identification and diversity assessment in germplasm collections.

Mol Ecol Resour 2015 Sep 21;15(5):1091-101. Epub 2015 Feb 21.

School of Agriculture and Food Sciences, The University of Queensland, Brisbane, QLD, 4072, Australia.

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http://dx.doi.org/10.1111/1755-0998.12379DOI Listing
September 2015

Creating new interspecific hybrid and polyploid crops.

Trends Biotechnol 2015 Aug 8;33(8):436-41. Epub 2015 Jul 8.

School of Plant Biology, The University of Western Australia, 35 Stirling Hwy, Crawley 6009, Australia.

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http://dx.doi.org/10.1016/j.tibtech.2015.06.004DOI Listing
August 2015

Chromosomal genomics facilitates fine mapping of a Russian wheat aphid resistance gene.

Theor Appl Genet 2015 Jul 11;128(7):1373-83. Epub 2015 Apr 11.

Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany, Šlechtitelů 31, 783 71, Olomouc, Czech Republic.

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http://link.springer.com/10.1007/s00122-015-2512-2
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http://dx.doi.org/10.1007/s00122-015-2512-2DOI Listing
July 2015

Microspore culture reveals complex meiotic behaviour in a trigenomic Brassica hybrid.

BMC Plant Biol 2015 Jul 8;15:173. Epub 2015 Jul 8.

School of Plant Biology, The University of Western Australia, 35 Stirling Highway, Crawley, 6009, Perth, Australia.

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http://dx.doi.org/10.1186/s12870-015-0555-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4493989PMC
July 2015

A complex recombination pattern in the genome of allotetraploid Brassica napus as revealed by a high-density genetic map.

PLoS One 2014 30;9(10):e109910. Epub 2014 Oct 30.

National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China; Key Laboratory of Rapeseed Genetics and Breeding of Agriculture Ministry of China, Huazhong Agricultural University, Wuhan, China.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4214627PMC
June 2015

Advances in plant genotyping: where the future will take us.

Methods Mol Biol 2015 ;1245:1-11

School of Agriculture and Food Sciences, University of Queensland, Brisbane, QLD, Australia.

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http://dx.doi.org/10.1007/978-1-4939-1966-6_1DOI Listing
June 2015

Molecular marker applications in plants.

Methods Mol Biol 2015 ;1245:13-27

School of Agriculture and Food Sciences, University of Queensland, Brisbane, QLD, Australia.

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http://dx.doi.org/10.1007/978-1-4939-1966-6_2DOI Listing
June 2015

Genome-wide delineation of natural variation for pod shatter resistance in Brassica napus.

PLoS One 2014 9;9(7):e101673. Epub 2014 Jul 9.

Graham Centre for Agricultural Innovation (an alliance between NSW Department of Primary Industries and Charles Sturt University), Wagga Wagga Agricultural Institute, Wagga Wagga, NSW, Australia.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4090071PMC
March 2015

Gene loss in the fungal canola pathogen Leptosphaeria maculans.

Funct Integr Genomics 2015 Mar 25;15(2):189-96. Epub 2014 Nov 25.

School of Agriculture and Food Sciences, University of Queensland, Brisbane, QLD, 4072, Australia.

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http://dx.doi.org/10.1007/s10142-014-0412-1DOI Listing
March 2015

Genome-wide survey of the seagrass Zostera muelleri suggests modification of the ethylene signalling network.

J Exp Bot 2015 Mar 6;66(5):1489-98. Epub 2015 Jan 6.

School of Agriculture and Food Sciences, University of Queensland, Brisbane, QLD 4072, Australia Australian Centre for Plant Functional Genomics, School of Land, Crop and Food Sciences, University of Queensland, Brisbane, QLD 4067, Australia School of Plant Biology, University of Western Australia, WA, 6009, Australia

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http://dx.doi.org/10.1093/jxb/eru510DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4339605PMC
March 2015

Scanning the effects of ethyl methanesulfonate on the whole genome of Lotus japonicus using second-generation sequencing analysis.

G3 (Bethesda) 2015 Feb 6;5(4):559-67. Epub 2015 Feb 6.

Centre of Integrative Legume Research, School of Agriculture and Food Science, The University of Queensland, St Lucia, Brisbane QLD 4072, Australia School of Plant Biology, University of Western Australia, Crawley, WA 6009, Australia.

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http://dx.doi.org/10.1534/g3.114.014571DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390572PMC
February 2015

Identification and characterization of more than 4 million intervarietal SNPs across the group 7 chromosomes of bread wheat.

Plant Biotechnol J 2015 Jan 22;13(1):97-104. Epub 2014 Aug 22.

School of Agriculture and Food Sciences, University of Queensland, Brisbane, Qld, Australia; Australian Centre for Plant Functional Genomics, University of Queensland, Brisbane, Qld, Australia.

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http://dx.doi.org/10.1111/pbi.12240DOI Listing
January 2015

SNP markers-based map construction and genome-wide linkage analysis in Brassica napus.

Plant Biotechnol J 2014 Sep 3;12(7):851-60. Epub 2014 Apr 3.

Graham Centre for Agricultural Innovation (an alliance between NSW Department of Primary Industries and Charles Sturt University), Wagga Wagga Agricultural Institute, Wagga Wagga, NSW, Australia.

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http://dx.doi.org/10.1111/pbi.12186DOI Listing
September 2014

New technologies for ultrahigh-throughput genotyping in plant taxonomy.

Methods Mol Biol 2014 ;1115:151-75

School of Agriculture and Food Sciences, University of Queensland, Brisbane, QLD, Australia.

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http://dx.doi.org/10.1007/978-1-62703-767-9_8DOI Listing
August 2014

A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies.

Plant Biotechnol J 2014 Aug 5;12(6):778-86. Epub 2014 Apr 5.

University of Queensland, St. Lucia, Queensland, Australia; Australian Centre for Plant Functional Genomics, University of Queensland, St. Lucia, Queensland, Australia; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Andhra Pradesh, India.

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http://dx.doi.org/10.1111/pbi.12182DOI Listing
August 2014

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.

Science 2014 Aug 21;345(6199):950-3. Epub 2014 Aug 21.

Commissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, BP5706, 91057 Evry, France. Université d'Evry Val d'Essone, UMR 8030, CP5706, Evry, France. Centre National de Recherche Scientifique (CNRS), UMR 8030, CP5706, Evry, France.

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http://dx.doi.org/10.1126/science.1253435DOI Listing
August 2014

High-resolution molecular karyotyping uncovers pairing between ancestrally related Brassica chromosomes.

New Phytol 2014 May 28;202(3):964-74. Epub 2014 Jan 28.

School of Agriculture and Food Sciences, The University of Queensland, Brisbane, 4072, Qld, Australia; Centre for Integrative Legume Research, The University of Queensland, Brisbane, 4072, Qld, Australia.

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http://dx.doi.org/10.1111/nph.12706DOI Listing
May 2014

The fate of chromosomes and alleles in an allohexaploid Brassica population.

Genetics 2014 May 20;197(1):273-83. Epub 2014 Feb 20.

School of Agriculture and Food Sciences and Centre for Integrative Legume Research, The University of Queensland, Brisbane Queensland 4072, Australia.

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http://dx.doi.org/10.1534/genetics.113.159574DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4012485PMC
May 2014

Next generation characterisation of cereal genomes for marker discovery.

Biology (Basel) 2013 Nov 25;2(4):1357-77. Epub 2013 Nov 25.

Australian Centre for Plant Functional Genomics, School of Agriculture and Food Science, the University of Queensland, Brisbane, QLD 4072, Australia.

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http://dx.doi.org/10.3390/biology2041357DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4009793PMC
November 2013

Identifying genetic diversity of avirulence genes in Leptosphaeria maculans using whole genome sequencing.

Funct Integr Genomics 2013 Aug 21;13(3):295-308. Epub 2013 Jun 21.

School of Agriculture and Food Sciences and Centre for Integrative Legume Research, University of Queensland, Brisbane, Queensland 4072, Australia.

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http://dx.doi.org/10.1007/s10142-013-0324-5DOI Listing
August 2013

Dispersion and domestication shaped the genome of bread wheat.

Plant Biotechnol J 2013 Jun 24;11(5):564-71. Epub 2013 Jan 24.

School of Agriculture and Food Sciences, University of Queensland, Brisbane, QLD, Australia.

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http://doi.wiley.com/10.1111/pbi.12044
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June 2013

Predicting polymorphic EST-SSRs in silico.

Mol Ecol Resour 2013 May 11;13(3):538-45. Epub 2013 Feb 11.

Melbourne eResearch Group, University of Melbourne, Parkville, Vic, 3010, Australia.

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http://dx.doi.org/10.1111/1755-0998.12078DOI Listing
May 2013

Genetic and physical mapping of flowering time loci in canola (Brassica napus L.).

Theor Appl Genet 2013 Jan 7;126(1):119-32. Epub 2012 Sep 7.

EH Graham Centre for Agricultural Innovation (an alliance between NSWDPI and Charles Sturt University), Wagga Wagga, Australia.

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http://dx.doi.org/10.1007/s00122-012-1966-8DOI Listing
January 2013