Publications by authors named "Jacob Schreiber"

16Publications

A pitfall for machine learning methods aiming to predict across cell types.

Genome Biol 2020 Nov 19;21(1):282. Epub 2020 Nov 19.

Paul G. Allen School of Computer Science & Engineering, University of Washington, Seattle, USA.

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November 2020

Prioritizing transcriptomic and epigenomic experiments by using an optimization strategy that leverages imputed data.

Bioinformatics 2020 Sep 23. Epub 2020 Sep 23.

Department of Genome Sciences, University of Washington, Seattle, United States.

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September 2020

Completing the ENCODE3 compendium yields accurate imputations across a variety of assays and human biosamples.

Genome Biol 2020 03 30;21(1):82. Epub 2020 Mar 30.

Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, USA.

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March 2020

Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome.

Genome Biol 2020 03 30;21(1):81. Epub 2020 Mar 30.

Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, USA.

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March 2020

Strongyloides Hyperinfection Presenting as a Gastric Outlet Obstruction.

Cureus 2020 Jan 8;12(1):e6603. Epub 2020 Jan 8.

Gastroenterology, Gastroenterology Associates of Brooklyn, Brooklyn, USA.

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January 2020

A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens.

Cell 2019 01 3;176(1-2):377-390.e19. Epub 2019 Jan 3.

Department of Genome Sciences, University of Washington, Seattle, WA 98105, USA; Brotman Baty Institute for Precision Medicine, University of Washington, Seattle, WA 98105, USA; Howard Hughes Medical Institute, Seattle, WA 98105, USA. Electronic address:

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January 2019

Analysis of nanopore data using hidden Markov models.

Bioinformatics 2015 Jun 3;31(12):1897-903. Epub 2015 Feb 3.

Nanopore Group, Department of Biomolecular Engineering, University of California Santa Cruz, CA 95064, USA.

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June 2015

Discrimination among protein variants using an unfoldase-coupled nanopore.

ACS Nano 2014 Dec 8;8(12):12365-75. Epub 2014 Dec 8.

Nanopore Group, Department of Biomolecular Engineering, University of California , Santa Cruz, California 95064, United States.

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December 2014

Nanopores discriminate among five C5-cytosine variants in DNA.

J Am Chem Soc 2014 Nov 14;136(47):16582-7. Epub 2014 Nov 14.

Department of Biomolecular Engineering, Baskin School of Engineering, MS SOE2, University of California , Santa Cruz, California 95064, United States.

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November 2014

Error rates for nanopore discrimination among cytosine, methylcytosine, and hydroxymethylcytosine along individual DNA strands.

Proc Natl Acad Sci U S A 2013 Nov 28;110(47):18910-5. Epub 2013 Oct 28.

Nanopore Group, Department of Biomolecular Engineering, University of California, Santa Cruz, CA 95064.

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November 2013

Blue nevus of the colorectal mucosa.

Ann Diagn Pathol 2011 Apr 22;15(2):128-30. Epub 2010 Apr 22.

Department of Pathology, SUNY–Stony Brook University Medical Center, NY 11794, USA.

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April 2011

Pediatric nontraumatic myositis ossificans of the neck.

Pediatr Radiol 2009 Apr 20;39(4):409-12. Epub 2009 Feb 20.

Stony Brook University School of Medicine, Stony Brook University Medical Center, Stony Brook, NY 11794, USA.

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April 2009