Jacob Odeberg

Jacob Odeberg

UNVERIFIED PROFILE

Are you Jacob Odeberg?   Register this Author

Register author
Jacob Odeberg

Jacob Odeberg

Publications by authors named "Jacob Odeberg"

Are you Jacob Odeberg?   Register this Author

58Publications

1097Reads

8Profile Views

Correlation of computed tomography with carotid plaque transcriptomes associates calcification with lesion-stabilization.

Atherosclerosis 2019 May 11. Epub 2019 May 11.

Department of Vascular Surgery, Karolinska University Hospital, Stockholm, Sweden; Department of Molecular Medicine and Surgery, Karolinska Institutet, Stockholm, Sweden. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.atherosclerosis.2019.05.005DOI Listing
May 2019

A systems-approach reveals human nestin is an endothelial-enriched, angiogenesis-independent intermediate filament protein.

Sci Rep 2018 Oct 2;8(1):14668. Epub 2018 Oct 2.

Science for Life Laboratory, School of Biotechnology, Kungliga Tekniska Högskolan (KTH) Royal Institute of Technology, SE-171 21, Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://www.nature.com/articles/s41598-018-32859-4
Publisher Site
http://dx.doi.org/10.1038/s41598-018-32859-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6168570PMC
October 2018

Whole blood ristocetin-activated platelet impedance aggregometry (Multiplate) for the rapid detection of Von Willebrand disease.

Thromb Haemost 2017 07 6;117(8):1528-1533. Epub 2017 Jul 6.

Anna Ågren, MD, PhD, Coagulation Unit, Hematology Center, Karolinska University Hospital, 171 76 Stockholm, Sweden, Tel.: +46 8 51773373, Fax: +46 8 51775084, E-mail:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1160/TH17-02-0129DOI Listing
July 2017

Tissue microarray profiling in human heart failure.

Proteomics 2016 09 11;16(17):2319-26. Epub 2016 Aug 11.

Department of Anatomy and Histology, Bosch Institute, Sydney Medical School, The University of Sydney, Sydney, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/pmic.201600135DOI Listing
September 2016

Phenotypic Modulation of Smooth Muscle Cells in Atherosclerosis Is Associated With Downregulation of LMOD1, SYNPO2, PDLIM7, PLN, and SYNM.

Arterioscler Thromb Vasc Biol 2016 09 28;36(9):1947-61. Epub 2016 Jul 28.

From the Departments of Molecular Medicine and Surgery (L.P.M., U.R., A.R., M.L., I.E., S.R., M.K., S.A., J.R., U.H.), Medicine (M.S.-L., J.M., V.P., Y.L., H.J., M.G.D., L.M., E.E., G.P.-B., G.K.H., P.E., A.H.), Division of Cardiovascular Epidemiology, Institute of Environmental Medicine (U.d.F.), and Department of Clinical Neuroscience, Center for Molecular Medicine (V.V.), Karolinska Institutet, Solna, Sweden; Division of Vascular Surgery, Stanford University, CA (C.L.M., T.Q.); Science for Life Laboratory, Solna, Sweden (M.V., J.L.); Dipartimento di Scienze Farmacologiche e Biomolecolari, Università di Milano, Italy (D.B., E.T.); Dipartimento di Scienze Cliniche e di Comunità, Centro Cardiologico Monzino, IRCCS, Milan, Italy (D.B., F.V., E.T.); British Heart Foundation Laboratories, Department of Medicine, University College of London, United Kingdom (S.E.H.); Department of Cardiology, Karolinska University Hospital Solna, Karolinska Institutet, Stockholm, Sweden (U.d.F.); Science for Life Laboratory, Department of Proteomics, Stockholm, Sweden (J.O.); and Department of Vascular Surgery, Leiden University Medical Center, The Netherlands (J.H.N.L.).

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1161/ATVBAHA.116.307893DOI Listing
September 2016

Analysis of Body-wide Unfractionated Tissue Data to Identify a Core Human Endothelial Transcriptome.

Cell Syst 2016 09 15;3(3):287-301.e3. Epub 2016 Sep 15.

Science for Life Laboratory, School of Biotechnology, Royal Institute of Technology (KTH), 171 21 Stockholm, Sweden; Coagulation Unit, Centre for Hematology, Karolinska University Hospital, 171 76 Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cels.2016.08.001DOI Listing
September 2016

Cardiovascular disease and mortality after a first episode of venous thromboembolism in young and middle-aged women.

Thromb Res 2016 Feb 2;138:80-85. Epub 2015 Dec 2.

Department of Clinical Science and Education, Södersjukhuset, Karolinska Institutet, Stockholm, Sweden; Department of Internal Medicine, Södersjukhuset, Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.thromres.2015.11.039DOI Listing
February 2016

GeneiASE: Detection of condition-dependent and static allele-specific expression from RNA-seq data without haplotype information.

Sci Rep 2016 Feb 18;6:21134. Epub 2016 Feb 18.

KTH Royal Institute of Technology, Science for Life Laboratory, School of Biotechnology, Division of Gene Technology, SE-171 65, Solna, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep21134DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4758070PMC
February 2016

F11 is associated with recurrent VTE in women. A prospective cohort study.

Thromb Haemost 2016 Jan 1;115(2):406-14. Epub 2015 Oct 1.

Jacob Odeberg, MD PhD, Department of Proteomics, School of Biotechnology, Royal Institute of Technology (KTH), Science for Life Laboratory Stockholm, Box 1031, 171 21 Solna, Sweden, Tel: +46 70 2087571, Fax: +46 8 51775084, Email:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1160/TH15-06-0459DOI Listing
January 2016

Influence of pre-existing inflammation on the outcome of acute coronary syndrome: a cross-sectional study.

BMJ Open 2016 Jan 12;6(1):e009968. Epub 2016 Jan 12.

Department of Community Medicine/Primary Health Care, University of Gothenburg, Göteborg, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1136/bmjopen-2015-009968DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4716249PMC
January 2016

The kidney transcriptome and proteome defined by transcriptomics and antibody-based profiling.

PLoS One 2014 31;9(12):e116125. Epub 2014 Dec 31.

School of Biotechnology, Science for Life Laboratory, KTH - Royal Institute of Technology, Stockholm, Sweden; Department of Medicine, Karolinska Institutet and Centre for Hematology, Karolinska University Hospital, Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0116125PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4281243PMC
October 2015

Association of venous thromboembolism with hormonal contraception and thrombophilic genotypes.

Obstet Gynecol 2014 Sep;124(3):600-9

Department of Medicine, Karolinska Institutet, the Centre for Pharmacoepidemiology, Department of Medicine, Solna, Karolinska Institutet, the Coagulation Unit, Hematology Centre, and the Division of Clinical Pharmacology, Karolinska University Hospital, Stockholm, the Medical Products Agency, Uppsala, and the Department of Clinical Sciences/Medical Radiology, Diagnostic Centre of Imaging and Functional Medicine, Lund University, Lund, Sweden; and the Department of Medicine, McMaster University, Hamilton, Ontario, Canada.

View Article

Download full-text PDF

Source
http://pdfs.journals.lww.com/greenjournal/2014/09000/Associa
Web Search
http://content.wkhealth.com/linkback/openurl?sid=WKPTLP:land
Publisher Site
http://dx.doi.org/10.1097/AOG.0000000000000411DOI Listing
September 2014

Profiling post-centrifugation delay of serum and plasma with antibody bead arrays.

J Proteomics 2013 Dec 28;95:46-54. Epub 2013 Apr 28.

Science for Life Laboratory, School of Biotechnology, KTH - Royal Institute of Technology, Box 1031, SE-171 21 Solna, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jprot.2013.04.020DOI Listing
December 2013

Heart research advances using database search engines, Human Protein Atlas and the Sydney Heart Bank.

Heart Lung Circ 2013 Oct 13;22(10):819-26. Epub 2013 Jul 13.

Discipline of Anatomy & Histology, Bosch Institute, University of Sydney, Sydney 2006, Australia. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.hlc.2013.06.006DOI Listing
October 2013

Profiling of atherosclerotic lesions by gene and tissue microarrays reveals PCSK6 as a novel protease in unstable carotid atherosclerosis.

Arterioscler Thromb Vasc Biol 2013 Oct 1;33(10):2432-43. Epub 2013 Aug 1.

From the Department of Molecular Medicine and Surgery (L.P., E.H., A.R., M.L., C.O., U.H.), and Department of Medicine (G.P.-B., J.O.), Karolinska Institute, Stockholm, Sweden; Department of Molecular Genetics, Novo Nordisk, Copenhagen, Denmark (L.F.); Department of Surgery, Södersjukhuset, Stockholm, Sweden (P.G.); Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden (F.P.); and Department of Proteomics, Royal Institute of Technology, Stockholm, Sweden (J.O.).

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1161/ATVBAHA.113.301743DOI Listing
October 2013

Risk factors for venous thromboembolism in pre-and postmenopausal women.

Thromb Res 2012 Oct 14;130(4):596-601. Epub 2012 Jun 14.

Department of Medicine Solna, Centre for Pharmacoepidemiology, Karolinska Institutet, Stockholm, Sweden.

View Article

Download full-text PDF

Source
https://linkinghub.elsevier.com/retrieve/pii/S00493848120024
Publisher Site
http://dx.doi.org/10.1016/j.thromres.2012.05.024DOI Listing
October 2012

A genome-wide association study identifies KNG1 as a genetic determinant of plasma factor XI Level and activated partial thromboplastin time.

Arterioscler Thromb Vasc Biol 2012 Aug 14;32(8):2008-16. Epub 2012 Jun 14.

Department of Medicine, Cardiovascular Genetics and Genomics Group, Atherosclerosis Research Unit, Karolinska Institutet, Karolinska University Hospital Solna, Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1161/ATVBAHA.112.248492DOI Listing
August 2012

Antibody-based protein profiling of the human chromosome 21.

Mol Cell Proteomics 2012 Mar 31;11(3):M111.013458. Epub 2011 Oct 31.

Science for Life Laboratory, Royal Institute of Technology, SE-17121 Solna, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/mcp.M111.013458DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3316724PMC
March 2012

Linkage analysis of autopsy-confirmed familial Alzheimer disease supports an Alzheimer disease locus in 8q24.

Dement Geriatr Cogn Disord 2011 27;31(2):109-18. Epub 2011 Jan 27.

Karolinska Institutet, Department of Neurobiology, Care Sciences and Society, KI-ADRC, KASPAC, Novum, Sweden.

View Article

Download full-text PDF

Source
https://www.karger.com/Article/FullText/323808
Publisher Site
http://dx.doi.org/10.1159/000323808DOI Listing
July 2011

Allele-specific transcription of the PAI-1 gene in human astrocytes.

Thromb Haemost 2010 Nov 30;104(5):998-1008. Epub 2010 Aug 30.

Department of Clinical Neuroscience and Rehabilitation, Institute of Neuroscience and Physiology, the Sahlgrenska Academy at University of Gothenburg, Gothenburg, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1160/TH10-04-0243DOI Listing
November 2010

Linkage to 20p13 including the ANGPT4 gene in families with mixed Alzheimer's disease and vascular dementia.

J Hum Genet 2010 Oct 1;55(10):649-55. Epub 2010 Jul 1.

Department of Neurobiology, Care Sciences and Society, Karolinska Institutet Alzheimer Disease Research Center, KASPAC, Huddinge, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/jhg.2010.79DOI Listing
October 2010

The Asp298 allele of endothelial nitric oxide synthase is a risk factor for myocardial infarction among patients with type 2 diabetes mellitus.

BMC Cardiovasc Disord 2008 Dec 10;8:36. Epub 2008 Dec 10.

Department of Medicine, Atherosclerosis Research Unit, Centre for Molecular Medicine, Karolinska Institutet, University Hospital, Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2261-8-36DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2636751PMC
December 2008

The epitope space of the human proteome.

Protein Sci 2008 Apr;17(4):606-13

School of Biotechnology, AlbaNova University Center, Royal Institute of Technology, SE-106 91 Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1110/ps.073347208DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2271163PMC
April 2008

Expanded high-resolution genetic study of 109 Swedish families with Alzheimer's disease.

Eur J Hum Genet 2008 Feb 24;16(2):202-8. Epub 2007 Oct 24.

Department of Neurobiology, Care Sciences and Society, Karolinska Institutet Dainippon Sumitomo Pharma Alzheimer Center (KASPAC), Karolinska Institutet, Huddinge, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/sj.ejhg.5201946DOI Listing
February 2008

In silico detection of sequence variations modifying transcriptional regulation.

PLoS Comput Biol 2008 Jan 27;4(1):e5. Epub 2007 Nov 27.

Department of Gene Technology, School of Biotechnology, AlbaNova University Center, Royal Institute of Technology (KTH), Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pcbi.0040005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2211530PMC
January 2008

APC resistance during the normal menstrual cycle.

Thromb Haemost 2007 Dec;98(6):1246-51

Department of Woman and Child Health, Division of Obstetrics and Gynaecology, Karolinska University Hospital, S-171 76 Stockholm, Sweden.

View Article

Download full-text PDF

Source
December 2007

The use of grid computing to drive data-intensive genetic research.

Eur J Hum Genet 2007 Jun 21;15(6):694-702. Epub 2007 Mar 21.

Department of Biotechnology, AlbaNova University Center, Royal Institute of Technology (KTH), SE-10691 Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/sj.ejhg.5201815DOI Listing
June 2007

Using Grid technology for computationally intensive applied bioinformatics analyses.

In Silico Biol 2006 ;6(6):495-504

Department of Biotechnology, Royal Institute of Technology (KTH), Stockholm, Sweden.

View Article

Download full-text PDF

Source
June 2007

Comparison of PrASE and Pyrosequencing for SNP Genotyping.

BMC Genomics 2006 Nov 16;7:291. Epub 2006 Nov 16.

Department of Biotechnology, Royal Institute of Technology (KTH), AlbaNova University Center, Roslagstullsbacken 21, SE--106 91 Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-7-291DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1657021PMC
November 2006

Allele-specific MMP-3 transcription under in vivo conditions.

Biochem Biophys Res Commun 2006 Sep 4;348(3):1150-6. Epub 2006 Aug 4.

Atherosclerosis Research Unit, King Gustav V Research Institute, Department of Medicine, Karolinska Institute, Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.bbrc.2006.07.174DOI Listing
September 2006

Alternative promoter usage of the membrane glycoprotein CD36.

BMC Mol Biol 2006 Mar 3;7. Epub 2006 Mar 3.

Department of Biotechnology, AlbaNova University Center, Royal Institute of Technology (KTH), 106 91 Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2199-7-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1475603PMC
March 2006

Pyrosequencing analysis of thrombosis-associated risk markers.

Clin Chem 2005 Aug;51(8):1549-52

Department of Biotechnology, Royal Institute of Technology, Stockholm Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1373/clinchem.2005.049932DOI Listing
August 2005

A structural basis for CD8+ T cell-dependent recognition of non-homologous peptide ligands: implications for molecular mimicry in autoreactivity.

J Biol Chem 2005 Jul 21;280(29):27069-75. Epub 2005 Apr 21.

Department of Medical Biochemistry and Biophysics, Microbiology and Tumor Biology Center, and Strategic Research Center IRIS for Studies of Integrated Recognition in the Immune System, Karolinska Institutet, SE-171 77 Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/jbc.M500927200DOI Listing
July 2005

Pyrosequencing for detection of lamivudine-resistant hepatitis B virus.

J Clin Microbiol 2004 Oct;42(10):4788-95

Department of Laboratory Medicine, Division of Clinical Virology, Karolina Institutet, Huddinge University Hospital, Huddinge/Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/JCM.42.10.4788-4795.2004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC522336PMC
October 2004

Vascular gene expression in atherosclerotic plaque-prone regions analyzed by representational difference analysis.

Pathobiology 2004 ;71(2):107-14

Department of Biotechnology, KTH, Royal Institute of Technology, Stockholm, Sweden.

View Article

Download full-text PDF

Source
https://www.karger.com/Article/FullText/74426
Publisher Site
http://dx.doi.org/10.1159/000074426DOI Listing
August 2004

Shotgun sequencing and microarray analysis of RDA transcripts.

Gene 2003 May;310:39-47

Department of Biotechnology, Division of Molecular Biotechnology, KTH, Royal Institute of Technology, AlbaNova University Center, Stockholm Centre for Physics, Astronomy, and Biotechnology, SE-106 91, Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/s0378-1119(03)00498-0DOI Listing
May 2003

A structural basis for LCMV immune evasion: subversion of H-2D(b) and H-2K(b) presentation of gp33 revealed by comparative crystal structure.Analyses.

Immunity 2002 Dec;17(6):757-68

Microbiology and Tumor Biology Center, Karolinska Institutet, Royal School of Technology, S-106 91 Stockholm, Sweden.

View Article

Download full-text PDF

Source
December 2002

Molecular haplotyping by pyrosequencing.

Biotechniques 2002 Nov;33(5):1104, 1106, 1108

Department of Biotechnology, KTH, Royal Institute of Technology, Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.2144/02335dd02DOI Listing
November 2002

SNP typing by apyrase-mediated allele-specific primer extension on DNA microarrays.

Nucleic Acids Res 2002 Aug;30(15):e75

Department of Biotechnology, Royal Institute of Technology (KTH), AlbaNova University Center, S-106 91 Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC137093PMC
http://dx.doi.org/10.1093/nar/gnf074DOI Listing
August 2002

Gene expression analysis by signature pyrosequencing.

Gene 2002 May;289(1-2):31-9

Department of Biotechnology, KTH, Royal Institute of Technology SCFAB, Roslagstullsbacken 21, 106 91 Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/s0378-1119(02)00548-6DOI Listing
May 2002