Jacob E Crawford

Jacob E Crawford

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Jacob E Crawford

Jacob E Crawford

Publications by authors named "Jacob E Crawford"

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Improved reference genome of Aedes aegypti informs arbovirus vector control.

Authors:
Benjamin J Matthews Olga Dudchenko Sarah B Kingan Sergey Koren Igor Antoshechkin Jacob E Crawford William J Glassford Margaret Herre Seth N Redmond Noah H Rose Gareth D Weedall Yang Wu Sanjit S Batra Carlos A Brito-Sierra Steven D Buckingham Corey L Campbell Saki Chan Eric Cox Benjamin R Evans Thanyalak Fansiri Igor Filipović Albin Fontaine Andrea Gloria-Soria Richard Hall Vinita S Joardar Andrew K Jones Raissa G G Kay Vamsi K Kodali Joyce Lee Gareth J Lycett Sara N Mitchell Jill Muehling Michael R Murphy Arina D Omer Frederick A Partridge Paul Peluso Aviva Presser Aiden Vidya Ramasamy Gordana Rašić Sourav Roy Karla Saavedra-Rodriguez Shruti Sharan Atashi Sharma Melissa Laird Smith Joe Turner Allison M Weakley Zhilei Zhao Omar S Akbari William C Black Han Cao Alistair C Darby Catherine A Hill J Spencer Johnston Terence D Murphy Alexander S Raikhel David B Sattelle Igor V Sharakhov Bradley J White Li Zhao Erez Lieberman Aiden Richard S Mann Louis Lambrechts Jeffrey R Powell Maria V Sharakhova Zhijian Tu Hugh M Robertson Carolyn S McBride Alex R Hastie Jonas Korlach Daniel E Neafsey Adam M Phillippy Leslie B Vosshall

Nature 2018 11 14;563(7732):501-507. Epub 2018 Nov 14.

Laboratory of Neurogenetics and Behavior, The Rockefeller University, New York, NY, USA.

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http://www.nature.com/articles/s41586-018-0692-z
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http://dx.doi.org/10.1038/s41586-018-0692-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6421076PMC
November 2018

Natural Selection on Genes Related to Cardiovascular Health in High-Altitude Adapted Andeans.

Authors:
Jacob E Crawford Ricardo Amaru Jihyun Song Colleen G Julian Fernando Racimo Jade Yu Cheng Xiuqing Guo Jie Yao Bharath Ambale-Venkatesh João A Lima Jerome I Rotter Josef Stehlik Lorna G Moore Josef T Prchal Rasmus Nielsen

Am J Hum Genet 2017 Nov;101(5):752-767

Department of Integrative Biology, University of California, Berkeley, Berkeley, CA 94702, USA; Museum of Natural History, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark; Department of Statistics, University of California, Berkeley, Berkeley, CA 94702, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2017.09.023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5673686PMC
November 2017

The complex effects of demographic history on the estimation of substitution rate: concatenated gene analysis results in no more than twofold overestimation.

Authors:
Christopher H Martin Sebastian Höhna Jacob E Crawford Bruce J Turner Emilie J Richards Lee H Simons

Proc Biol Sci 2017 08;284(1860)

Retired. U.S. Fish and Wildlife Service, 7123 Grounsel Street, Las Vegas, Nevada 89131, USA.

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http://dx.doi.org/10.1098/rspb.2017.0537DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5563795PMC
August 2017

Asian wild rice is a hybrid swarm with extensive gene flow and feralization from domesticated rice.

Authors:
Hongru Wang Filipe G Vieira Jacob E Crawford Chengcai Chu Rasmus Nielsen

Genome Res 2017 06 6;27(6):1029-1038. Epub 2017 Apr 6.

Department of Integrative Biology, University of California, Berkeley, California 94720, USA.

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http://dx.doi.org/10.1101/gr.204800.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5453317PMC
June 2017

Population genomics reveals that an anthropophilic population of Aedes aegypti mosquitoes in West Africa recently gave rise to American and Asian populations of this major disease vector.

Authors:
Jacob E Crawford Joel M Alves William J Palmer Jonathan P Day Massamba Sylla Ranjan Ramasamy Sinnathamby N Surendran William C Black Arnab Pain Francis M Jiggins

BMC Biol 2017 02 28;15(1):16. Epub 2017 Feb 28.

Department of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK.

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http://dx.doi.org/10.1186/s12915-017-0351-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5329927PMC
February 2017

A genomic history of Aboriginal Australia.

Authors:
Anna-Sapfo Malaspinas Michael C Westaway Craig Muller Vitor C Sousa Oscar Lao Isabel Alves Anders Bergström Georgios Athanasiadis Jade Y Cheng Jacob E Crawford Tim H Heupink Enrico Macholdt Stephan Peischl Simon Rasmussen Stephan Schiffels Sankar Subramanian Joanne L Wright Anders Albrechtsen Chiara Barbieri Isabelle Dupanloup Anders Eriksson Ashot Margaryan Ida Moltke Irina Pugach Thorfinn S Korneliussen Ivan P Levkivskyi J Víctor Moreno-Mayar Shengyu Ni Fernando Racimo Martin Sikora Yali Xue Farhang A Aghakhanian Nicolas Brucato Søren Brunak Paula F Campos Warren Clark Sturla Ellingvåg Gudjugudju Fourmile Pascale Gerbault Darren Injie George Koki Matthew Leavesley Betty Logan Aubrey Lynch Elizabeth A Matisoo-Smith Peter J McAllister Alexander J Mentzer Mait Metspalu Andrea B Migliano Les Murgha Maude E Phipps William Pomat Doc Reynolds Francois-Xavier Ricaut Peter Siba Mark G Thomas Thomas Wales Colleen Ma'run Wall Stephen J Oppenheimer Chris Tyler-Smith Richard Durbin Joe Dortch Andrea Manica Mikkel H Schierup Robert A Foley Marta Mirazón Lahr Claire Bowern Jeffrey D Wall Thomas Mailund Mark Stoneking Rasmus Nielsen Manjinder S Sandhu Laurent Excoffier David M Lambert Eske Willerslev

Nature 2016 Oct 21;538(7624):207-214. Epub 2016 Sep 21.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark.

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http://dx.doi.org/10.1038/nature18299DOI Listing
October 2016

Evolution of GOUNDRY, a cryptic subgroup of Anopheles gambiae s.l., and its impact on susceptibility to Plasmodium infection.

Authors:
Jacob E Crawford Michelle M Riehle Kyriacos Markianos Emmanuel Bischoff Wamdaogo M Guelbeogo Awa Gneme N'Fale Sagnon Kenneth D Vernick Rasmus Nielsen Brian P Lazzaro

Mol Ecol 2016 Apr 17;25(7):1494-510. Epub 2016 Mar 17.

Department of Entomology, Cornell University, Ithaca, NY, USA.

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http://doi.wiley.com/10.1111/mec.13572
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http://dx.doi.org/10.1111/mec.13572DOI Listing
April 2016

Diabolical survival in Death Valley: recent pupfish colonization, gene flow and genetic assimilation in the smallest species range on earth.

Authors:
Christopher H Martin Jacob E Crawford Bruce J Turner Lee H Simons

Proc Biol Sci 2016 01;283(1823)

US Fish and and Wildlife Service, Las Vegas, NV, USA.

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http://dx.doi.org/10.1098/rspb.2015.2334DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4795021PMC
January 2016

Reticulate Speciation and Barriers to Introgression in the Anopheles gambiae Species Complex.

Authors:
Jacob E Crawford Michelle M Riehle Wamdaogo M Guelbeogo Awa Gneme N'Fale Sagnon Kenneth D Vernick Rasmus Nielsen Brian P Lazzaro

Genome Biol Evol 2015 Nov 28;7(11):3116-31. Epub 2015 Nov 28.

Department of Entomology, Cornell University.

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http://dx.doi.org/10.1093/gbe/evv203DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4994751PMC
November 2015

Uncovering the genetic history of the present-day Greenlandic population.

Authors:
Ida Moltke Matteo Fumagalli Thorfinn S Korneliussen Jacob E Crawford Peter Bjerregaard Marit E Jørgensen Niels Grarup Hans Christian Gulløv Allan Linneberg Oluf Pedersen Torben Hansen Rasmus Nielsen Anders Albrechtsen

Am J Hum Genet 2015 Jan 31;96(1):54-69. Epub 2014 Dec 31.

The Bioinformatics Centre, Department of Biology, University of Copenhagen, 2200 Copenhagen, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2014.11.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4289681PMC
January 2015

Population genetics of Anopheles coluzzii immune pathways and genes.

Authors:
Susan M Rottschaefer Jacob E Crawford Michelle M Riehle Wamdaogo M Guelbeogo Awa Gneme N'Fale Sagnon Kenneth D Vernick Brian P Lazzaro

G3 (Bethesda) 2014 Dec 30;5(3):329-39. Epub 2014 Dec 30.

Department of Entomology, Cornell University, Ithaca, New York 14853.

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http://dx.doi.org/10.1534/g3.114.014845DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4349087PMC
December 2014

Detecting adaptive trait loci in nonmodel systems: divergence or admixture mapping?

Authors:
Jacob E Crawford Rasmus Nielsen

Mol Ecol 2013 Dec 26;22(24):6131-48. Epub 2013 Nov 26.

Department of Integrative Biology, University of California, Berkeley, 4134 Valley Life Sciences Building, Berkeley, CA, 94720-3140, USA.

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http://dx.doi.org/10.1111/mec.12562DOI Listing
December 2013

No evidence for positive selection at two potential targets for malaria transmission-blocking vaccines in Anopheles gambiae s.s.

Authors:
Jacob E Crawford Susan M Rottschaefer Boubacar Coulibaly Madjou Sacko Oumou Niaré Michelle M Riehle Sékou F Traore Kenneth D Vernick Brian P Lazzaro

Infect Genet Evol 2013 Jun 26;16:87-92. Epub 2013 Jan 26.

Department of Entomology, Cornell University, Ithaca, NY, USA.

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http://dx.doi.org/10.1016/j.meegid.2013.01.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3763813PMC
June 2013

Evidence for population-specific positive selection on immune genes of Anopheles gambiae.

Authors:
Jacob E Crawford Emmanuel Bischoff Thierry Garnier Awa Gneme Karin Eiglmeier Inge Holm Michelle M Riehle Wamdaogo M Guelbeogo N'Fale Sagnon Brian P Lazzaro Kenneth D Vernick

G3 (Bethesda) 2012 Dec 1;2(12):1505-19. Epub 2012 Dec 1.

Department of Entomology, Cornell University, Ithaca, New York 14853, USA.

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http://dx.doi.org/10.1534/g3.112.004473DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3516473PMC
December 2012

Assessing the accuracy and power of population genetic inference from low-pass next-generation sequencing data.

Authors:
Jacob E Crawford Brian P Lazzaro

Front Genet 2012 24;3:66. Epub 2012 Apr 24.

Department of Entomology, Cornell University Ithaca, NY, USA.

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http://dx.doi.org/10.3389/fgene.2012.00066DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3334522PMC
October 2012

De novo transcriptome sequencing in Anopheles funestus using Illumina RNA-seq technology.

Authors:
Jacob E Crawford Wamdaogo M Guelbeogo Antoine Sanou Alphonse Traoré Kenneth D Vernick N'Fale Sagnon Brian P Lazzaro

PLoS One 2010 Dec 2;5(12):e14202. Epub 2010 Dec 2.

Department of Entomology, Cornell University, Ithaca, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0014202PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2996306PMC
December 2010

The demographic histories of the M and S molecular forms of Anopheles gambiae s.s.

Authors:
Jacob E Crawford Brian P Lazzaro

Mol Biol Evol 2010 Aug 11;27(8):1739-44. Epub 2010 Mar 11.

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http://www.lazzaro.entomology.cornell.edu/reprints/2010aMBE.
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http://mbe.oxfordjournals.org/cgi/doi/10.1093/molbev/msq070
Publisher Site
http://dx.doi.org/10.1093/molbev/msq070DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2915640PMC
August 2010

The distribution of hatching time in Anopheles gambiae.

Authors:
Alpha S Yaro Adama Dao Abdoulaye Adamou Jacob E Crawford José M C Ribeiro Robert Gwadz Sekou F Traoré Tovi Lehmann

Malar J 2006 Mar 22;5:19. Epub 2006 Mar 22.

Laboratory of Malaria and Vector Research, NIAID, NIH, 12735 Twinbrook Parkway, Rockville, MD, USA.

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http://dx.doi.org/10.1186/1475-2875-5-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1479351PMC
March 2006