Jack Gilbert

Jack Gilbert

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Jack Gilbert

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Precision medicine in perinatal depression in light of the human microbiome.

Psychopharmacology (Berl) 2020 Apr 17;237(4):915-941. Epub 2020 Feb 17.

Scripts Oceanographic Institute, University of California San Diego, La Jolla, CA, USA.

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http://dx.doi.org/10.1007/s00213-019-05436-4DOI Listing
April 2020

Re-examining causes of surgical site infections following elective surgery in the era of asepsis.

Lancet Infect Dis 2020 Mar 29;20(3):e38-e43. Epub 2020 Jan 29.

Department of Surgery, Pritzker School of Medicine, University of Chicago, Chicago, IL 60637, USA.

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http://dx.doi.org/10.1016/S1473-3099(19)30756-XDOI Listing
March 2020

Longitudinal survey of microbiome associated with particulate matter in a megacity.

Genome Biol 2020 Mar 3;21(1):55. Epub 2020 Mar 3.

School of Life Sciences, Tsinghua-Peking Center for Life Sciences, Beijing Frontier Research Center for Biological Structure, Center for Synthetic and Systems Biology, Ministry of Education Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology, Ministry of Education Key Laboratory of Bioinformatics, Tsinghua University, Beijing, 100084, China.

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http://dx.doi.org/10.1186/s13059-020-01964-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7055069PMC
March 2020

The Future of Microbiome-Based Therapeutics in Clinical Applications.

Clin Pharmacol Ther 2020 Jan 15;107(1):123-128. Epub 2019 Nov 15.

Department of Pediatrics, University of California San Diego School of Medicine, La Jolla, California, USA.

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http://dx.doi.org/10.1002/cpt.1677DOI Listing
January 2020

Comparative Analysis of Gut Microbiota Following Changes in Training Volume Among Swimmers.

Int J Sports Med 2020 Jan 23. Epub 2020 Jan 23.

Department of Biological Sciences, University of Illinois at Chicago, Chicago, United States.

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http://dx.doi.org/10.1055/a-1079-5450DOI Listing
January 2020

Age and Mothers: Potent Influences of Children's Skin Microbiota.

J Invest Dermatol 2019 Dec 13;139(12):2497-2505.e6. Epub 2019 Aug 13.

Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Institute of Biodiversity Science, School of Life Sciences, Fudan University, Shanghai, China. Electronic address:

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http://dx.doi.org/10.1016/j.jid.2019.05.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6874717PMC
December 2019

Acknowledgment of Reviewers.

Authors:
Jack A Gilbert

mSystems 2019 Dec 17;4(6). Epub 2019 Dec 17.

University of California, San Diego, San Diego, California, USA

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http://dx.doi.org/10.1128/mSystems.00797-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6918033PMC
December 2019

Associations between fungal and bacterial microbiota of airways and asthma endotypes.

J Allergy Clin Immunol 2019 Nov 3;144(5):1214-1227.e7. Epub 2019 Jul 3.

Section of Pulmonary and Critical Care Medicine, Department of Medicine, University of Chicago, Chicago, Ill. Electronic address:

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http://dx.doi.org/10.1016/j.jaci.2019.06.025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6842419PMC
November 2019

Ecology and Host Identity Outweigh Evolutionary History in Shaping the Bat Microbiome.

mSystems 2019 Nov 12;4(6). Epub 2019 Nov 12.

Department of Pediatrics, University of California San Diego, La Jolla, California, USA

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http://dx.doi.org/10.1128/mSystems.00511-19DOI Listing
November 2019

Dysbiosis in Children Born by Caesarean Section.

Ann Nutr Metab 2018 24;73 Suppl 3:24-32. Epub 2018 Jul 24.

Commense Inc., Boston, Massachusetts, USA.

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http://dx.doi.org/10.1159/000492168DOI Listing
October 2019

The Origin, Succession, and Predicted Metabolism of Bacterial Communities Associated with Leaf Decomposition.

mBio 2019 09 3;10(5). Epub 2019 Sep 3.

Department of Ecology & Evolution, University of Chicago, Chicago, Illinois, USA.

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http://dx.doi.org/10.1128/mBio.01703-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6722416PMC
September 2019

Pharmacomicrobiomics: The Holy Grail to Variability in Drug Response?

Clin Pharmacol Ther 2019 08 7;106(2):317-328. Epub 2019 May 7.

Department of Pediatrics, University of California San Diego School of Medicine, La Jolla, California, USA.

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http://dx.doi.org/10.1002/cpt.1437DOI Listing
August 2019

Impacts of indoor surface finishes on bacterial viability.

Indoor Air 2019 07 13;29(4):551-562. Epub 2019 May 13.

Department of Civil and Environmental Engineering, Northwestern University, Evanston, Illinois.

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https://onlinelibrary.wiley.com/doi/abs/10.1111/ina.12558
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http://dx.doi.org/10.1111/ina.12558DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6851865PMC
July 2019

Microbial Similarity between Students in a Common Dormitory Environment Reveals the Forensic Potential of Individual Microbial Signatures.

mBio 2019 07 30;10(4). Epub 2019 Jul 30.

Physics of Living Systems, Department of Physics, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA

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http://dx.doi.org/10.1128/mBio.01054-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6667619PMC
July 2019

Community ecology as a framework for human microbiome research.

Nat Med 2019 06 27;25(6):884-889. Epub 2019 May 27.

Division of Gastroenterology, Department of Medicine, University of California, San Francisco, San Francisco, CA, USA.

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http://www.nature.com/articles/s41591-019-0464-9
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http://dx.doi.org/10.1038/s41591-019-0464-9DOI Listing
June 2019

Quantifying and Understanding Well-to-Well Contamination in Microbiome Research.

mSystems 2019 Jun 25;4(4). Epub 2019 Jun 25.

Department of Pediatrics, University of California, San Diego, La Jolla, California, USA

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http://dx.doi.org/10.1128/mSystems.00186-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6593221PMC
June 2019

Microbial and metabolic succession on common building materials under high humidity conditions.

Nat Commun 2019 04 16;10(1):1767. Epub 2019 Apr 16.

Department of Pediatrics and Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, 92037, USA.

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http://dx.doi.org/10.1038/s41467-019-09764-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6467912PMC
April 2019

Phylogenetic imprint of woody plants on the soil mycobiome in natural mountain forests of eastern China.

ISME J 2019 03 23;13(3):686-697. Epub 2018 Oct 23.

State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, East Beijing Road 71, Nanjing, 210008, China.

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http://dx.doi.org/10.1038/s41396-018-0303-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6461945PMC
March 2019

Enteric dysbiosis and fecal calprotectin expression in premature infants.

Pediatr Res 2019 02 10;85(3):361-368. Epub 2018 Dec 10.

Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, MD, USA.

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http://www.nature.com/articles/s41390-018-0254-y
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http://dx.doi.org/10.1038/s41390-018-0254-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6377820PMC
February 2019

Agricultural Risk Factors Influence Microbial Ecology in Honghu Lake.

Genomics Proteomics Bioinformatics 2019 02 23;17(1):76-90. Epub 2019 Apr 23.

Key Laboratory of Molecular Biophysics of the Ministry of Education, Hubei Key Laboratory of Bioinformatics and Molecular-imaging, Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China. Electronic address:

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http://dx.doi.org/10.1016/j.gpb.2018.04.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6520916PMC
February 2019

Gut microbial features can predict host phenotype response to protein deficiency.

Physiol Rep 2018 Dec;6(23):e13932

Department of Medicine, Division of Endocrinology, Diabetes, and Metabolism, University of Illinois at Chicago, Chicago, IL.

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http://dx.doi.org/10.14814/phy2.13932DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6280014PMC
December 2018

Microbiology of the built environment.

Nat Rev Microbiol 2018 11;16(11):661-670

Department of Civil, Architectural, and Environmental Engineering, Illinois Institute of Technology, Chicago, IL, USA.

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http://www.nature.com/articles/s41579-018-0065-5
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http://dx.doi.org/10.1038/s41579-018-0065-5DOI Listing
November 2018

Genetic correlation network prediction of forest soil microbial functional organization.

ISME J 2018 10 25;12(10):2492-2505. Epub 2018 Jul 25.

Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China.

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http://www.nature.com/articles/s41396-018-0232-8
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http://dx.doi.org/10.1038/s41396-018-0232-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6155114PMC
October 2018

Preserving microbial diversity.

Science 2018 Oct;362(6410):33-34

Departments of Medicine and Microbiology, New York University Langone Medical Center, New York, NY 10016, USA.

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http://www.sciencemag.org/lookup/doi/10.1126/science.aau8816
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http://dx.doi.org/10.1126/science.aau8816DOI Listing
October 2018

Existing Climate Change Will Lead to Pronounced Shifts in the Diversity of Soil Prokaryotes.

mSystems 2018 Sep-Oct;3(5). Epub 2018 Oct 23.

State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.

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http://msystems.asm.org/lookup/doi/10.1128/mSystems.00167-18
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http://dx.doi.org/10.1128/mSystems.00167-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6199470PMC
October 2018

Dichotomous development of the gut microbiome in preterm infants.

Microbiome 2018 09 12;6(1):157. Epub 2018 Sep 12.

Department of Pediatrics, Morsani College of Medicine, University of South Florida, Tampa, FL, USA.

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https://microbiomejournal.biomedcentral.com/articles/10.1186
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http://dx.doi.org/10.1186/s40168-018-0547-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6136210PMC
September 2018

Salinity is a key factor driving the nitrogen cycling in the mangrove sediment.

Sci Total Environ 2018 Aug 28;631-632:1342-1349. Epub 2018 Mar 28.

Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, Fujian Province 361024, China; Center for Excellence in Regional Atmospheric Environment, Institute of Urban Environment, Chinese Academy of Sciences, China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00489697183085
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http://dx.doi.org/10.1016/j.scitotenv.2018.03.102DOI Listing
August 2018

Microbial exposure and human health.

Curr Opin Microbiol 2018 08 5;44:79-87. Epub 2018 Sep 5.

Department of Surgery, University of Chicago, Chicago, IL 60637, United States; BioSciences, Argonne National Laboratory, Lemont, IL 60439, United States.

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http://dx.doi.org/10.1016/j.mib.2018.08.003DOI Listing
August 2018

Metagenomic analysis of basal ice from an Alaskan glacier.

Microbiome 2018 07 5;6(1):123. Epub 2018 Jul 5.

School of Life Sciences, Tsinghua-Peking Joint Center for Life Sciences, Center for Synthetic and Systems Biology, Ministry of Education Key Laboratory of Bioinformatics, Tsinghua University, Beijing, 100084, China.

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http://dx.doi.org/10.1186/s40168-018-0505-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6034282PMC
July 2018

Systems biology of the human microbiome.

Curr Opin Biotechnol 2018 06 14;51:146-153. Epub 2018 Feb 14.

The Microbiome Center, Department of Surgery, University of Chicago, Chicago, USA; Biosciences Division, Argonne National Laboratory, Lemont, IL, USA; Marine Biology Laboratory, Woods Hole, MA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.copbio.2018.01.018DOI Listing
June 2018

Ecological medicine.

Authors:
Jack A Gilbert

Environ Microbiol 2018 06 30;20(6):1917-1919. Epub 2018 Apr 30.

Department of Surgery, University of Chicago, Chicago, IL, 60637, USA.

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http://dx.doi.org/10.1111/1462-2920.14115DOI Listing
June 2018

Current State of Knowledge on Implications of Gut Microbiome for Surgical Conditions.

J Gastrointest Surg 2018 06 5;22(6):1112-1123. Epub 2018 Apr 5.

Department of Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.

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http://dx.doi.org/10.1007/s11605-018-3755-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5966332PMC
June 2018

Soil Bacterial Diversity Is Associated with Human Population Density in Urban Greenspaces.

Environ Sci Technol 2018 05 12;52(9):5115-5124. Epub 2018 Apr 12.

The Microbiome Center, Department of Surgery , University of Chicago , Chicago , Illinois 60637 , United States.

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http://dx.doi.org/10.1021/acs.est.7b06417DOI Listing
May 2018

Current understanding of the human microbiome.

Nat Med 2018 04;24(4):392-400

Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, California, USA.

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http://dx.doi.org/10.1038/nm.4517DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7043356PMC
April 2018

Earth Microbiome Project and Global Systems Biology.

mSystems 2018 May-Jun;3(3). Epub 2018 Apr 10.

Department of Pediatrics, University of California San Diego, La Jolla, California, USA.

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http://dx.doi.org/10.1128/mSystems.00217-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5893859PMC
April 2018

Discerning autotrophy, mixotrophy and heterotrophy in marine TACK archaea from the North Atlantic.

FEMS Microbiol Ecol 2018 03;94(3)

Department of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ 08901-8521, USA.

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http://dx.doi.org/10.1093/femsec/fiy014DOI Listing
March 2018

Early-Career Systems Microbiology Scientists.

Authors:
Jack A Gilbert

mSystems 2018 Mar-Apr;3(2). Epub 2018 Mar 6.

Biosciences Division, Argonne National Laboratory, Argonne, Illinois, USA.

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http://dx.doi.org/10.1128/mSystems.00002-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5853184PMC
March 2018

Taxonomic and functional patterns across soil microbial communities of global biomes.

Sci Total Environ 2017 Dec 3;609:1064-1074. Epub 2017 Aug 3.

Microbial Resources Division, Multidisciplinary Center for Chemistry, Biology and Agriculture Research (CPQBA), Campinas University, Brazil.

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http://dx.doi.org/10.1016/j.scitotenv.2017.07.159DOI Listing
December 2017

Optimum Operating Room Environment for the Prevention of Surgical Site Infections.

Surg Infect (Larchmt) 2017 May/Jun;18(4):503-507. Epub 2017 Apr 12.

Department of Surgery, University of Chicago Medical Center , Chicago, Illinois.

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http://dx.doi.org/10.1089/sur.2017.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5972753PMC
October 2017

Identifying the plant-associated microbiome across aquatic and terrestrial environments: the effects of amplification method on taxa discovery.

Mol Ecol Resour 2017 Sep 25;17(5):931-942. Epub 2017 Jan 25.

Department of Ecology and Evolution, The University of Chicago, 1101 E 57th Street, Chicago, IL, 60637, USA.

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http://dx.doi.org/10.1111/1755-0998.12645DOI Listing
September 2017

Alpine soil carbon is vulnerable to rapid microbial decomposition under climate cooling.

ISME J 2017 09 23;11(9):2102-2111. Epub 2017 May 23.

State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China.

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http://dx.doi.org/10.1038/ismej.2017.75DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5563962PMC
September 2017

Preparing the Bowel for Surgery: Learning from the Past and Planning for the Future.

J Am Coll Surg 2017 08 19;225(2):324-332. Epub 2017 May 19.

Department of Surgery, The University of Chicago, The Pritzker School of Medicine, Chicago, IL.

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http://dx.doi.org/10.1016/j.jamcollsurg.2017.05.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5761741PMC
August 2017

Metabolic Reconstruction and Modeling Microbial Electrosynthesis.

Sci Rep 2017 08 21;7(1):8391. Epub 2017 Aug 21.

Department of Environmental Health Sciences, Arnold School of Public Health, University of South Carolina, Columbia, South Carolina, USA.

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http://dx.doi.org/10.1038/s41598-017-08877-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5566340PMC
August 2017

Size, Composition, and Source Profiles of Inhalable Bioaerosols from Colorado Dairies.

Environ Sci Technol 2017 Jun 25;51(11):6430-6440. Epub 2017 May 25.

The Microbiome Center, Biosciences Division, Argonne National Laboratory , Lemont, Illinois 60439, United States.

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http://dx.doi.org/10.1021/acs.est.7b00882DOI Listing
June 2017

Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes.

mSphere 2017 May-Jun;2(3). Epub 2017 Jun 28.

Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA.

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http://dx.doi.org/10.1128/mSphere.00169-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5489657PMC
June 2017

The Microbiome-Mitochondrion Connection: Common Ancestries, Common Mechanisms, Common Goals.

mSystems 2017 May-Jun;2(3). Epub 2017 May 9.

Department of Surgery, National University of Singapore, Singapore.

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http://dx.doi.org/10.1128/mSystems.00018-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5425687PMC
May 2017

Significant Impacts of Increasing Aridity on the Arid Soil Microbiome.

mSystems 2017 May-Jun;2(3). Epub 2017 May 30.

Department of Soil Water and Environmental Science, University of Arizona, Tucson, Arizona, USA.

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http://dx.doi.org/10.1128/mSystems.00195-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5451488PMC
May 2017

The human microbiome: an emerging tool in forensics.

Microb Biotechnol 2017 03;10(2):228-230

Biosciences Division, Argonne National Laboratory, Lemont, IL, 60443, USA.

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http://dx.doi.org/10.1111/1751-7915.12699DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5328825PMC
March 2017

Invasive Plants Rapidly Reshape Soil Properties in a Grassland Ecosystem.

mSystems 2017 Mar-Apr;2(2). Epub 2017 Mar 7.

Graduate Program in Biophysical Sciences, University of Chicago, Chicago, Illinois, USA; Bioscience Division, The Microbiome Center, Argonne National Laboratory, Argonne, Illinois, USA; Department of Surgery, The Microbiome Center, University of Chicago, Chicago, Illinois, USA; Marine Biological Laboratory, The Microbiome Center, Woods Hole, Massachusetts, USA.

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http://dx.doi.org/10.1128/mSystems.00178-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5340861PMC
March 2017

Celebrating parasites.

Nat Genet 2017 03;49(4):483-484

Department of Pharmacology, University of Colorado School of Medicine, Aurora, Colorado, USA.

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http://dx.doi.org/10.1038/ng.3830DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5710834PMC
March 2017

Distinct Biogeographic Patterns for Archaea, Bacteria, and Fungi along the Vegetation Gradient at the Continental Scale in Eastern China.

mSystems 2017 Jan-Feb;2(1). Epub 2017 Feb 7.

Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou, China.

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http://dx.doi.org/10.1128/mSystems.00174-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5296412PMC
February 2017

Disturbance Regimes Predictably Alter Diversity in an Ecologically Complex Bacterial System.

mBio 2016 12 20;7(6). Epub 2016 Dec 20.

Graduate Program in Biophysical Sciences, University of Chicago, Chicago, Illinois, USA.

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http://dx.doi.org/10.1128/mBio.01372-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5181773PMC
December 2016

Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort.

mSystems 2016 Sep-Oct;1(5). Epub 2016 Oct 18.

Department of Pediatrics, University of California San Diego, San Diego, California, USA; Department of Computer Science and Engineering, University of California San Diego, San Diego, California, USA.

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http://dx.doi.org/10.1128/mSystems.00105-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5080405PMC
October 2016

The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat.

mSystems 2016 Jul-Aug;1(4). Epub 2016 Aug 2.

BioFrontiers Institute, University of Colorado Boulder, Boulder, Colorado, USA; Departments of Chemistry and Biochemistry and Computer Science, University of Colorado Boulder, Boulder, Colorado, USA.

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http://dx.doi.org/10.1128/mSystems.00046-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5069958PMC
August 2016