Publications by authors named "Jacek Puchałka"

35Publications

Differential diagnosis in ulcerative colitis in an adolescent: Chronic granulomatous disease needs extra attention.

World J Gastrointest Pathophysiol 2017 May;8(2):87-92

Daniel Kotlarz, Jacek Puchalka, Cristoph Klein, Department of Pediatrics Dr. Von Hauner Children's Hospital, Ludwig-Maximilians-University, 80539 Munich, Germany.

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http://dx.doi.org/10.4291/wjgp.v8.i2.87DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5437506PMC
May 2017

Preference of Genetic Diagnosis of CXCR4 Mutation Compared with Clinical Diagnosis of WHIM Syndrome.

J Clin Immunol 2017 04 28;37(3):282-286. Epub 2017 Mar 28.

Research Center for Immunodeficiencies, Pediatrics Center of Excellence, Children's Medical Center, Tehran University of Medical Science, 62 Qarib St., Keshavarz Blvd., Tehran, 14194, Iran.

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http://dx.doi.org/10.1007/s10875-017-0387-5DOI Listing
April 2017

Characterizing the optimal flux space of genome-scale metabolic reconstructions through modified latin-hypercube sampling.

Mol Biosyst 2016 Mar;12(3):994-1005

Synthetic and Systems Biology Research Group, Helmholtz Centre for Infection Research, Braunschweig, Germany.

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http://dx.doi.org/10.1039/c5mb00457hDOI Listing
March 2016

Multicongenic fate mapping quantification of dynamics of thymus colonization.

J Exp Med 2015 Sep 7;212(10):1589-601. Epub 2015 Sep 7.

Institute of Immunology, Hannover Medical School, D-30625 Hannover, Germany

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http://dx.doi.org/10.1084/jem.20142143DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4577840PMC
September 2015

Phage-mediated dispersal of biofilm and distribution of bacterial virulence genes is induced by quorum sensing.

PLoS Pathog 2015 Feb 23;11(2):e1004653. Epub 2015 Feb 23.

Division of Infectious Diseases, Department of Medicine, University Hospital, Freiburg, Germany; Department of Pediatrics, Dr. von Hauner Children´s Hospital, Ludwig-Maximilians University of Munich, Munich, Germany; German Center for Infection Research (DZIF), Partnersite Munich, Munich, Germany.

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http://dx.doi.org/10.1371/journal.ppat.1004653DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4338201PMC
February 2015

From the environment to the host: re-wiring of the transcriptome of Pseudomonas aeruginosa from 22°C to 37°C.

PLoS One 2014 24;9(2):e89941. Epub 2014 Feb 24.

Department of Microbiology, Immunology, and Cancer Biology, University of Virginia, Charlottesville, Virginia, United States of America ; Department of Pediatrics, and Center for Cystic Fibrosis Research, Emory University School of Medicine, Children's Healthcare of Atlanta, Inc., Atlanta, Georgia, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0089941PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3933690PMC
January 2015

Reconciling in vivo and in silico key biological parameters of Pseudomonas putida KT2440 during growth on glucose under carbon-limited condition.

BMC Biotechnol 2013 Oct 29;13:93. Epub 2013 Oct 29.

Systems and Synthetic Biology Group, Helmholtz Centre for Infection Research, Inhoffenstraße 7, D-38124, Braunschweig, Germany.

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http://dx.doi.org/10.1186/1472-6750-13-93DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3829105PMC
October 2013

Immunoglobulins drive terminal maturation of splenic dendritic cells.

Proc Natl Acad Sci U S A 2013 Feb 23;110(6):2282-7. Epub 2013 Jan 23.

Department of Molecular Immunology, Helmholtz Centre for Infection Research, 38124 Braunschweig, Germany.

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http://dx.doi.org/10.1073/pnas.1210654110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3568358PMC
February 2013

Modeling and analysis of flux distributions in the two branches of the phosphotransferase system in Pseudomonas putida.

BMC Syst Biol 2012 Dec 6;6:149. Epub 2012 Dec 6.

Fachgebiet Systembiotechnologie, Technische Universität München, Garching b, München, Germany.

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http://dx.doi.org/10.1186/1752-0509-6-149DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3562155PMC
December 2012

Ex vivo transcriptional profiling reveals a common set of genes important for the adaptation of Pseudomonas aeruginosa to chronically infected host sites.

Environ Microbiol 2013 Feb 12;15(2):570-87. Epub 2012 Nov 12.

Institute for Molecular Bacteriology, Twincore, Center for Clinical and Experimental Infection Research, a joint venture of the Helmholtz Center of Infection Research and the Hannover Medical School, Hannover, 30625, Germany.

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http://dx.doi.org/10.1111/1462-2920.12024DOI Listing
February 2013

Protoanemonin: a natural quorum sensing inhibitor that selectively activates iron starvation response.

Environ Microbiol 2013 Jan 5;15(1):111-20. Epub 2012 Jun 5.

Systems and Synthetic Biology Group, HZI-Helmholtz-Zentrum für Infektionsforschung, Braunschweig, Germany.

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http://doi.wiley.com/10.1111/j.1462-2920.2012.02792.x
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http://dx.doi.org/10.1111/j.1462-2920.2012.02792.xDOI Listing
January 2013

Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis.

PLoS Comput Biol 2011 Mar 31;7(3):e1001116. Epub 2011 Mar 31.

Department of Biomedical Engineering, University of Virginia, Charlottesville, Virginia, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1001116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3068926PMC
March 2011

Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1.

J Bacteriol 2008 Apr 11;190(8):2790-803. Epub 2008 Jan 11.

Department of Biomedical Engineering, University of Virginia Health System, Box 800759, Charlottesville, VA 22908, USA.

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http://dx.doi.org/10.1128/JB.01583-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2293256PMC
April 2008

Bridging the gap between stochastic and deterministic regimes in the kinetic simulations of the biochemical reaction networks.

Biophys J 2004 Mar;86(3):1357-72

Institute of Biochemistry and Biophysics, Polish Academy of Sciences, 02-106 Warsaw, Poland.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1303974PMC
http://dx.doi.org/10.1016/S0006-3495(04)74207-1DOI Listing
March 2004