Publications by authors named "Irwin Jungreis"

29Publications

Genomic RNA Elements Drive Phase Separation of the SARS-CoV-2 Nucleocapsid.

Mol Cell 2020 12 27;80(6):1078-1091.e6. Epub 2020 Nov 27.

Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. Electronic address:

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December 2020

Translation Initiation Site Profiling Reveals Widespread Synthesis of Non-AUG-Initiated Protein Isoforms in Yeast.

Cell Syst 2020 Aug 24;11(2):145-160.e5. Epub 2020 Jul 24.

Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA; Center for Computational Biology, University of California, Berkeley, Berkeley, CA 94720, USA. Electronic address:

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August 2020

Sarbecovirus comparative genomics elucidates gene content of SARS-CoV-2 and functional impact of COVID-19 pandemic mutations.

bioRxiv 2020 Jun 3. Epub 2020 Jun 3.

MIT Computer Science and Artificial Intelligence Laboratory, Cambridge, MA.

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June 2020

Evidence for a novel overlapping coding sequence in POLG initiated at a CUG start codon.

BMC Genet 2020 03 6;21(1):25. Epub 2020 Mar 6.

Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.

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March 2020

Few SINEs of life: Alu elements have little evidence for biological relevance despite elevated translation.

NAR Genom Bioinform 2020 Mar 19;2(1):lqz023. Epub 2019 Dec 19.

Bioinformatics Unit, Spanish National Cancer Research Centre, 28029 Madrid, Spain.

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March 2020

Elucidation of Codon Usage Signatures across the Domains of Life.

Mol Biol Evol 2019 10;36(10):2328-2339

Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA.

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October 2019

A gene expression atlas of embryonic neurogenesis in reveals complex spatiotemporal regulation of lncRNAs.

Development 2019 03 28;146(6). Epub 2019 Mar 28.

Laboratory for Systems Biology of Neural Tissue Differentiation, Berlin Institute for Medical Systems Biology (BIMSB), Max Delbrueck Centre for Molecular Medicine (MDC) in the Helmholtz Association, Robert-Roessle-Strasse 12, 13125 Berlin, Germany

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March 2019

Evolutionary Dynamics of Abundant Stop Codon Readthrough.

Mol Biol Evol 2016 12 7;33(12):3108-3132. Epub 2016 Sep 7.

MIT Computer Science and Artificial Intelligence Laboratory, Cambridge, MA

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December 2016

Improved Identification and Analysis of Small Open Reading Frame Encoded Polypeptides.

Anal Chem 2016 Apr 24;88(7):3967-75. Epub 2016 Mar 24.

Salk Institute for Biological Studies, Clayton Foundation Laboratories for Peptide Biology , 10010 North Torrey Pines Road, La Jolla, California 92037, United States.

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April 2016

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone.

Cell 2015 Jun;161(7):1516-26

Broad Institute of Harvard and MIT, 75 Ames Street, Cambridge, MA 02142, USA; Harvard University, 52 Oxford Street, Cambridge, MA 02138, USA. Electronic address:

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June 2015