Inanc Birol

Inanc Birol

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Inanc Birol

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Fusion-Bloom: fusion detection in assembled transcriptomes.

Bioinformatics 2019 Dec 2. Epub 2019 Dec 2.

Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, BC, Canada.

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http://dx.doi.org/10.1093/bioinformatics/btz902DOI Listing
December 2019

TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data.

BMC Med Genomics 2018 Sep 10;11(1):79. Epub 2018 Sep 10.

Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, 100-570 West 7th Ave, Vancouver, BC, V5Z 4S6, Canada.

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http://dx.doi.org/10.1186/s12920-018-0402-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6131862PMC
September 2018

ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers.

BMC Bioinformatics 2018 06 20;19(1):234. Epub 2018 Jun 20.

BC Cancer Genome Sciences Centre, Vancouver, BC, V5Z 4S6, Canada.

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http://dx.doi.org/10.1186/s12859-018-2243-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6011487PMC
June 2018

ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data.

Bioinformatics 2018 05;34(10):1697-1704

Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC V5Z 4S6, Canada.

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http://dx.doi.org/10.1093/bioinformatics/btx839DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5946899PMC
May 2018

Genomic and Cytogenetic Characterization of a Balanced Translocation Disrupting NUP98.

Cytogenet Genome Res 2017 31;152(3):117-121. Epub 2017 Aug 31.

Department of Medical Genetics, University of British Columbia, Vancouver, BC, Canada.

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http://dx.doi.org/10.1159/000479463DOI Listing
October 2017

ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter.

Genome Res 2017 05 23;27(5):768-777. Epub 2017 Feb 23.

Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, V5Z 4S6, Canada.

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http://dx.doi.org/10.1101/gr.214346.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5411771PMC
May 2017

ntCard: a streaming algorithm for cardinality estimation in genomics data.

Bioinformatics 2017 05;33(9):1324-1330

Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, V5Z 4S6, Canada.

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http://dx.doi.org/10.1093/bioinformatics/btw832DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5408799PMC
May 2017

A high-resolution reference genetic map positioning 8.8 K genes for the conifer white spruce: structural genomics implications and correspondence with physical distance.

Plant J 2017 Apr 6;90(1):189-203. Epub 2017 Mar 6.

Canada Research Chair in Forest Genomics, Forest Research Centre and Institute for Systems and Integrative Biology, Université Laval, Québec, QC, G1V 0A6, Canada.

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http://dx.doi.org/10.1111/tpj.13478DOI Listing
April 2017

De novo assembly of the ringed seal (Pusa hispida) blubber transcriptome: A tool that enables identification of molecular health indicators associated with PCB exposure.

Aquat Toxicol 2017 Apr 3;185:48-57. Epub 2017 Feb 3.

Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia V8W 3P6, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.aquatox.2017.02.004DOI Listing
April 2017

NanoSim: nanopore sequence read simulator based on statistical characterization.

Gigascience 2017 04;6(4):1-6

Canada's Michael Smith Genome Science Centre, British Columbia Cancer Agency, 570 W 7th Avenue, V5Z 4S6 Vancouver, Canada.

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http://dx.doi.org/10.1093/gigascience/gix010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5530317PMC
April 2017

Genome sequences of six species threatening forest ecosystems.

Genom Data 2016 Dec 3;10:85-88. Epub 2016 Oct 3.

Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, British Columbia, Canada; Institut de Biologie Intégrative des Systèmes, Université Laval, Québec, Canada.

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http://dx.doi.org/10.1016/j.gdata.2016.09.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5061060PMC
December 2016

ntHash: recursive nucleotide hashing.

Bioinformatics 2016 11 16;32(22):3492-3494. Epub 2016 Jul 16.

Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC V5Z 4S6, Canada.

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http://dx.doi.org/10.1093/bioinformatics/btw397DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5181554PMC
November 2016

LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads.

Gigascience 2015 4;4:35. Epub 2015 Aug 4.

BC Cancer Agency, Michael Smith Genome Sciences Centre, Vancouver, British Columbia V5Z 4S6 Canada.

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http://dx.doi.org/10.1186/s13742-015-0076-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4524009PMC
July 2016

Kleat: cleavage site analysis of transcriptomes.

Pac Symp Biocomput 2015 :347-58

Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, V5Z 4S6, Canada.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4350765PMC
April 2016

DIDA: Distributed Indexing Dispatched Alignment.

PLoS One 2015 29;10(4):e0126409. Epub 2015 Apr 29.

Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada; Department of Medical Genetics, University of British Columbia, Vancouver, BC, Canada; School of Computing Science, Simon Fraser University, Burnaby, BC, Canada.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0126409PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4414605PMC
April 2016

UniqTag: Content-Derived Unique and Stable Identifiers for Gene Annotation.

PLoS One 2015 28;10(5):e0128026. Epub 2015 May 28.

Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada; Department of Medical Genetics, University of British Columbia, Vancouver, BC, Canada.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0128026PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4447347PMC
April 2016

Large-scale profiling of microRNAs for The Cancer Genome Atlas.

Nucleic Acids Res 2016 Jan 13;44(1):e3. Epub 2015 Aug 13.

Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, V5Z 4S6, Canada Department of Medical Genetics, University of British Columbia, Vancouver, V6H 3N1, Canada

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http://dx.doi.org/10.1093/nar/gkv808DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4705681PMC
January 2016

Divergent clonal selection dominates medulloblastoma at recurrence.

Authors:
A Sorana Morrissy Livia Garzia David J H Shih Scott Zuyderduyn Xi Huang Patryk Skowron Marc Remke Florence M G Cavalli Vijay Ramaswamy Patricia E Lindsay Salomeh Jelveh Laura K Donovan Xin Wang Betty Luu Kory Zayne Yisu Li Chelsea Mayoh Nina Thiessen Eloi Mercier Karen L Mungall Yusanne Ma Kane Tse Thomas Zeng Karey Shumansky Andrew J L Roth Sohrab Shah Hamza Farooq Noriyuki Kijima Borja L Holgado John J Y Lee Stuart Matan-Lithwick Jessica Liu Stephen C Mack Alex Manno K A Michealraj Carolina Nor John Peacock Lei Qin Juri Reimand Adi Rolider Yuan Y Thompson Xiaochong Wu Trevor Pugh Adrian Ally Mikhail Bilenky Yaron S N Butterfield Rebecca Carlsen Young Cheng Eric Chuah Richard D Corbett Noreen Dhalla An He Darlene Lee Haiyan I Li William Long Michael Mayo Patrick Plettner Jenny Q Qian Jacqueline E Schein Angela Tam Tina Wong Inanc Birol Yongjun Zhao Claudia C Faria José Pimentel Sofia Nunes Tarek Shalaby Michael Grotzer Ian F Pollack Ronald L Hamilton Xiao-Nan Li Anne E Bendel Daniel W Fults Andrew W Walter Toshihiro Kumabe Teiji Tominaga V Peter Collins Yoon-Jae Cho Caitlin Hoffman David Lyden Jeffrey H Wisoff James H Garvin Duncan S Stearns Luca Massimi Ulrich Schüller Jaroslav Sterba Karel Zitterbart Stephanie Puget Olivier Ayrault Sandra E Dunn Daniela P C Tirapelli Carlos G Carlotti Helen Wheeler Andrew R Hallahan Wendy Ingram Tobey J MacDonald Jeffrey J Olson Erwin G Van Meir Ji-Yeoun Lee Kyu-Chang Wang Seung-Ki Kim Byung-Kyu Cho Torsten Pietsch Gudrun Fleischhack Stephan Tippelt Young Shin Ra Simon Bailey Janet C Lindsey Steven C Clifford Charles G Eberhart Michael K Cooper Roger J Packer Maura Massimino Maria Luisa Garre Ute Bartels Uri Tabori Cynthia E Hawkins Peter Dirks Eric Bouffet James T Rutka Robert J Wechsler-Reya William A Weiss Lara S Collier Adam J Dupuy Andrey Korshunov David T W Jones Marcel Kool Paul A Northcott Stefan M Pfister David A Largaespada Andrew J Mungall Richard A Moore Nada Jabado Gary D Bader Steven J M Jones David Malkin Marco A Marra Michael D Taylor

Nature 2016 Jan 13;529(7586):351-7. Epub 2016 Jan 13.

Developmental &Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario M5G 0A4, Canada.

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http://dx.doi.org/10.1038/nature16478DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4936195PMC
January 2016

Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation.

Genome Biol Evol 2015 Dec 8;8(1):29-41. Epub 2015 Dec 8.

Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada Department of Medical Genetics, University of British Columbia, Vancouver, BC, Canada School of Computing Science, Simon Fraser University, Burnaby, BC, Canada Department of Computer Science, University of British Columbia, Vancouver, BC, Canada

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http://dx.doi.org/10.1093/gbe/evv244DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4758241PMC
December 2015

Spaced Seed Data Structures for De Novo Assembly.

Int J Genomics 2015 11;2015:196591. Epub 2015 Oct 11.

Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada V5Z 4S6.

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http://dx.doi.org/10.1155/2015/196591DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4619942PMC
November 2015

Sealer: a scalable gap-closing application for finishing draft genomes.

BMC Bioinformatics 2015 Jul 25;16:230. Epub 2015 Jul 25.

Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, V5Z 4S6, Canada.

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http://dx.doi.org/10.1186/s12859-015-0663-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4515008PMC
July 2015

BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters.

Bioinformatics 2014 Dec 20;30(23):3402-4. Epub 2014 Aug 20.

Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC V5Z 4S6, Canada.

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http://dx.doi.org/10.1093/bioinformatics/btu558DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4816029PMC
December 2014

Insights into conifer giga-genomes.

Plant Physiol 2014 Dec 27;166(4):1724-32. Epub 2014 Oct 27.

Department of Ecology and Environmental Sciences (A.R.D.L.T., P.K.I.) and Umeå Plant Science Center, Department of Plant Physiology (P.K.I., S.J., O.N., N.S.), Umeå University, SE-901 87 Umea, Sweden;Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, Canada V5Z 4S6 (I.B., S.J.M.J.);Canada Research Chair in Forest and Environmental Genomics (J.Bou.) and Center for Forest Research and Institute for Systems and Integrative Biology (J.Bou., J.M.), Université Laval, Quebec, Quebec, Canada G1V 0A6;Michael Smith Laboratories (C.I.K., P.Z., J.Boh.) and Department of Forest and Conservation Sciences (K.R., J.Boh.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4; andBritish Columbia Ministry of Forests, Lands, and Natural Resource Operations, Victoria, British Columbia, Canada V8W 9C2 (A.Y.)

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http://dx.doi.org/10.1104/pp.114.248708DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4256843PMC
December 2014

Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii.

PLoS One 2013 15;8(8):e71328. Epub 2013 Aug 15.

Institute of Biochemistry, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia ; Centre of Excellence for Integrated Approaches in Chemistry and Biology of Proteins (CIPKeBiP), Ljubljana, Slovenia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0071328PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3744574PMC
April 2014

Evolution of gene structure in the conifer Picea glauca: a comparative analysis of the impact of intron size.

BMC Plant Biol 2014 Apr 16;14:95. Epub 2014 Apr 16.

Center for Forest Research and Institute for Systems and Integrative Biology, 1030 rue de la Médecine, Université Laval, Québec, QC G1V 0A6, Canada.

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http://dx.doi.org/10.1186/1471-2229-14-95DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4108047PMC
April 2014

A clinically validated diagnostic second-generation sequencing assay for detection of hereditary BRCA1 and BRCA2 mutations.

J Mol Diagn 2013 Nov 4;15(6):796-809. Epub 2013 Oct 4.

Cancer Genetics Laboratory, BC Cancer Agency, Vancouver, British Columbia, Canada; Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.1016/j.jmoldx.2013.07.004DOI Listing
November 2013

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.

Gigascience 2013 Jul 22;2(1):10. Epub 2013 Jul 22.

Genome Center, UC, Davis, CA 95616, USA.

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http://dx.doi.org/10.1186/2047-217X-2-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3844414PMC
July 2013

Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia.

N Engl J Med 2013 05 1;368(22):2059-74. Epub 2013 May 1.

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http://dx.doi.org/10.1056/NEJMoa1301689DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3767041PMC
May 2013

Identifying cancer mutation targets across thousands of samples: MuteProc, a high throughput mutation analysis pipeline.

BMC Bioinformatics 2013 May 28;14:167. Epub 2013 May 28.

Genome Sciences Centre, BC Cancer Agency, Suite 100 - 570 West 7th Ave, Vancouver, British Columbia, V5Z 4S6, Canada.

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http://dx.doi.org/10.1186/1471-2105-14-167DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3680031PMC
May 2013

Hive plots--rational approach to visualizing networks.

Brief Bioinform 2012 Sep 9;13(5):627-44. Epub 2011 Dec 9.

BC Cancer Research Center, Vancouver, Canada.

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http://dx.doi.org/10.1093/bib/bbr069DOI Listing
September 2012

Subgroup-specific structural variation across 1,000 medulloblastoma genomes.

Authors:
Paul A Northcott David J H Shih John Peacock Livia Garzia A Sorana Morrissy Thomas Zichner Adrian M Stütz Andrey Korshunov Jüri Reimand Steven E Schumacher Rameen Beroukhim David W Ellison Christian R Marshall Anath C Lionel Stephen Mack Adrian Dubuc Yuan Yao Vijay Ramaswamy Betty Luu Adi Rolider Florence M G Cavalli Xin Wang Marc Remke Xiaochong Wu Readman Y B Chiu Andy Chu Eric Chuah Richard D Corbett Gemma R Hoad Shaun D Jackman Yisu Li Allan Lo Karen L Mungall Ka Ming Nip Jenny Q Qian Anthony G J Raymond Nina T Thiessen Richard J Varhol Inanc Birol Richard A Moore Andrew J Mungall Robert Holt Daisuke Kawauchi Martine F Roussel Marcel Kool David T W Jones Hendrick Witt Africa Fernandez-L Anna M Kenney Robert J Wechsler-Reya Peter Dirks Tzvi Aviv Wieslawa A Grajkowska Marta Perek-Polnik Christine C Haberler Olivier Delattre Stéphanie S Reynaud François F Doz Sarah S Pernet-Fattet Byung-Kyu Cho Seung-Ki Kim Kyu-Chang Wang Wolfram Scheurlen Charles G Eberhart Michelle Fèvre-Montange Anne Jouvet Ian F Pollack Xing Fan Karin M Muraszko G Yancey Gillespie Concezio Di Rocco Luca Massimi Erna M C Michiels Nanne K Kloosterhof Pim J French Johan M Kros James M Olson Richard G Ellenbogen Karel Zitterbart Leos Kren Reid C Thompson Michael K Cooper Boleslaw Lach Roger E McLendon Darell D Bigner Adam Fontebasso Steffen Albrecht Nada Jabado Janet C Lindsey Simon Bailey Nalin Gupta William A Weiss László Bognár Almos Klekner Timothy E Van Meter Toshihiro Kumabe Teiji Tominaga Samer K Elbabaa Jeffrey R Leonard Joshua B Rubin Linda M Liau Erwin G Van Meir Maryam Fouladi Hideo Nakamura Giuseppe Cinalli Miklós Garami Peter Hauser Ali G Saad Achille Iolascon Shin Jung Carlos G Carlotti Rajeev Vibhakar Young Shin Ra Shenandoah Robinson Massimo Zollo Claudia C Faria Jennifer A Chan Michael L Levy Poul H B Sorensen Matthew Meyerson Scott L Pomeroy Yoon-Jae Cho Gary D Bader Uri Tabori Cynthia E Hawkins Eric Bouffet Stephen W Scherer James T Rutka David Malkin Steven C Clifford Steven J M Jones Jan O Korbel Stefan M Pfister Marco A Marra Michael D Taylor

Nature 2012 Aug;488(7409):49-56

Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario M5G 1L7, Canada.

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http://is.muni.cz/repo/990835/nature11327.pdf
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http://www.nature.com/doifinder/10.1038/nature11327
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http://dx.doi.org/10.1038/nature11327DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3683624PMC
August 2012

Dissect: detection and characterization of novel structural alterations in transcribed sequences.

Bioinformatics 2012 Jun;28(12):i179-87

School of Computing Science, Simon Fraser University, Burnaby, V5A 1S6 BC, Canada.

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http://dx.doi.org/10.1093/bioinformatics/bts214DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3371846PMC
June 2012

Genome sequence of Mycoplasma capricolum subsp. capripneumoniae strain M1601.

J Bacteriol 2011 Nov;193(21):6098-9

State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Epizootic Diseases of Grazing Animals of Ministry ofAgriculture, Lanzhou Veterinary Research Institute, CAAS, Lanzhou, China.

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http://dx.doi.org/10.1128/JB.05980-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3194924PMC
November 2011

Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees.

BMC Genomics 2011 Sep 16;12:450. Epub 2011 Sep 16.

Department of Biochemistry Ž Molecular Biology, Centre for High-throughput Biology, University of British Columbia, 2125 East Mall, Vancouver, British Columbia, V6T 1Z4 Canada.

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http://dx.doi.org/10.1186/1471-2164-12-450DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3188533PMC
September 2011

Human variation database: an open-source database template for genomic discovery.

Bioinformatics 2011 Apr 2;27(8):1155-6. Epub 2011 Mar 2.

Genome Sciences Centre, BC Cancer Agency, Suite 100 570 West 7th Avenue, Vancouver, British Columbia, Canada V5Z 4S6.

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http://dx.doi.org/10.1093/bioinformatics/btr100DOI Listing
April 2011

ABySS-Explorer: visualizing genome sequence assemblies.

IEEE Trans Vis Comput Graph 2009 Nov-Dec;15(6):881-8

BC Cancer Agency, Genome Sciences Centre.

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http://dx.doi.org/10.1109/TVCG.2009.116DOI Listing
January 2010

Assembling genomes using short-read sequencing technology.

Genome Biol 2010 Jan 28;11(1):202. Epub 2010 Jan 28.

Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British, Columbia V5Z 4E6, Canada.

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http://genomebiology.biomedcentral.com/articles/10.1186/gb-2
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http://dx.doi.org/10.1186/gb-2010-11-1-202DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2847710PMC
January 2010

Circos: an information aesthetic for comparative genomics.

Genome Res 2009 Sep 18;19(9):1639-45. Epub 2009 Jun 18.

Canada's Michael Smith Genome Sciences Center, Vancouver, British Columbia V5Z 4S6, Canada.

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http://dx.doi.org/10.1101/gr.092759.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2752132PMC
September 2009

ABySS: a parallel assembler for short read sequence data.

Genome Res 2009 Jun 27;19(6):1117-23. Epub 2009 Feb 27.

Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia V5Z 4E6, Canada.

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http://dx.doi.org/10.1101/gr.089532.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2694472PMC
June 2009

Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies.

Bioinformatics 2008 Jul;24(13):i32-40

Lab for Computational Biology, Simon Fraser University, Burnaby, BC, Canada.

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http://dx.doi.org/10.1093/bioinformatics/btn173DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2718651PMC
July 2008

Metabolic control analysis under uncertainty: framework development and case studies.

Biophys J 2004 Dec 1;87(6):3750-63. Epub 2004 Oct 1.

Department of Chemical and Biological Engineering, Northwestern University, Evanston, Illinois 60616, USA.

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http://dx.doi.org/10.1529/biophysj.104.048090DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1304888PMC
December 2004

Effect of environment partitioning on the survival and coexistence of autocatalytic replicators.

Phys Rev E Stat Nonlin Soft Matter Phys 2002 Nov 26;66(5 Pt 1):051916. Epub 2002 Nov 26.

Department of Chemical Engineering, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, USA.

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http://dx.doi.org/10.1103/PhysRevE.66.051916DOI Listing
November 2002