Igor V Grigoriev

Igor V Grigoriev

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Igor V Grigoriev

Igor V Grigoriev

Publications by authors named "Igor V Grigoriev"

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Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613.

Appl Microbiol Biotechnol 2019 Oct 3;103(19):8145-8155. Epub 2019 Sep 3.

Department of Biotechnology, College of Life Sciences and Biotechnology and Graduate School, Korea University, Seoul, 02841, South Korea.

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http://dx.doi.org/10.1007/s00253-019-10089-6DOI Listing
October 2019

Glucose-mediated repression of plant biomass utilization in the white-rot fungus .

Appl Environ Microbiol 2019 Oct 4. Epub 2019 Oct 4.

Fungal Physiology, Westerdijk Fungal Biodiversity Institute & Fungal Molecular Physiology, Utrecht University, Utrecht, The Netherlands.

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http://dx.doi.org/10.1128/AEM.01828-19DOI Listing
October 2019

Yeasts and how they came to be.

Nat Rev Microbiol 2019 Sep 26. Epub 2019 Sep 26.

DOE Joint Genome Institute Walnut Creek, California, USA.

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http://dx.doi.org/10.1038/s41579-019-0274-6DOI Listing
September 2019

Genome expansion by allopolyploidization in the fungal strain 2T2.1 and its exceptional lignocellulolytic machinery.

Biotechnol Biofuels 2019 23;12:229. Epub 2019 Sep 23.

4Bioenergy Research Unit, National Center for Agricultural Utilization Research, USDA-ARS, Peoria, IL 61604 USA.

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http://dx.doi.org/10.1186/s13068-019-1569-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6757388PMC
September 2019

Broad-specificity GH131 β-glucanases are a hallmark of fungi and oomycetes that colonize plants.

Environ Microbiol 2019 Aug 21;21(8):2724-2739. Epub 2019 Apr 21.

INRA, Aix-Marseille Univ, UMR1163, Biodiversité et Biotechnologie Fongiques, BBF, Marseille, France.

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http://dx.doi.org/10.1111/1462-2920.14596DOI Listing
August 2019

Fungal Endophytes of Alter Host Phenotype, Gene Expression, and Rhizobiome Composition.

Mol Plant Microbe Interact 2019 Jul 10;32(7):853-864. Epub 2019 Jun 10.

3 Department of Biology, Duke University, Durham, NC, U.S.A.

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http://dx.doi.org/10.1094/MPMI-05-18-0133-RDOI Listing
July 2019

Evolution and comparative genomics of the most common Trichoderma species.

BMC Genomics 2019 Jun 12;20(1):485. Epub 2019 Jun 12.

Microbiology and Applied Genomics Group, Research Area Biochemical Technology, Institute of Chemical, Environmental & Bioscience Engineering (ICEBE), TU Wien, Vienna, Austria.

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http://dx.doi.org/10.1186/s12864-019-5680-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6560777PMC
June 2019

Enzymatic Adaptation of Podospora anserina to Different Plant Biomass Provides Leads to Optimized Commercial Enzyme Cocktails.

Biotechnol J 2019 Apr 8;14(4):e1800185. Epub 2018 Oct 8.

Fungal Physiology, Westerdijk Fungal Biodiversity Institute & Fungal Molecular Physiology, Utrecht University, Uppsalalaan 8, 3584, CT, Utrecht, The Netherlands.

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http://doi.wiley.com/10.1002/biot.201800185
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http://dx.doi.org/10.1002/biot.201800185DOI Listing
April 2019

Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota.

New Phytol 2019 04 12;222(1):511-525. Epub 2019 Jan 12.

Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, 97331, USA.

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http://dx.doi.org/10.1111/nph.15613DOI Listing
April 2019

Mitovirus and Mitochondrial Coding Sequences from Basal Fungus .

Viruses 2019 Apr 17;11(4). Epub 2019 Apr 17.

Department of Plant and Environmental Sciences, University of Copenhagen, DK-1871 Frederiksberg, Denmark.

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https://www.mdpi.com/1999-4915/11/4/351
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http://dx.doi.org/10.3390/v11040351DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6520771PMC
April 2019

Deletion of either the regulatory gene or metabolic gene in leads to increased CAZyme gene expression on crude plant biomass.

Biotechnol Biofuels 2019 9;12:81. Epub 2019 Apr 9.

1Fungal Physiology, Westerdijk Fungal Biodiversity Institute & Fungal Molecular Physiology, Utrecht University, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands.

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http://dx.doi.org/10.1186/s13068-019-1422-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6454604PMC
April 2019

Introduction: Overview of Fungal Genomics.

Methods Mol Biol 2018 ;1775:1-7

Centre for Structural and Functional Genomics, Concordia University, Montreal, QC, Canada.

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http://dx.doi.org/10.1007/978-1-4939-7804-5_1DOI Listing
February 2019

Fungal Genome Annotation.

Methods Mol Biol 2018 ;1775:171-184

United States Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.

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http://dx.doi.org/10.1007/978-1-4939-7804-5_15DOI Listing
February 2019

Talaromyces borbonicus, sp. nov., a novel fungus from biodegraded Arundo donax with potential abilities in lignocellulose conversion.

Mycologia 2018 Mar-Apr;110(2):316-324. Epub 2018 May 29.

a Department of Chemical Sciences , University of Naples Federico II, Complesso Universitario Monte S. Angelo , via Cintia, 4 80126 Naples , Italy.

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http://dx.doi.org/10.1080/00275514.2018.1456835DOI Listing
January 2019

An analysis of codon bias in six red yeast species.

Yeast 2019 01 16;36(1):53-64. Epub 2018 Oct 16.

Dipartimento di Agraria, Università degli Studi di Sassari, Sassari, Italy.

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http://dx.doi.org/10.1002/yea.3359DOI Listing
January 2019

Catabolic repression in early-diverging anaerobic fungi is partially mediated by natural antisense transcripts.

Fungal Genet Biol 2018 12 15;121:1-9. Epub 2018 Sep 15.

Department of Chemical Engineering, University of California, Santa Barbara, Santa Barbara, CA 93106, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10871845183011
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http://dx.doi.org/10.1016/j.fgb.2018.09.004DOI Listing
December 2018

Genetic dissection of interspecific differences in yeast thermotolerance.

Nat Genet 2018 11 8;50(11):1501-1504. Epub 2018 Oct 8.

Department of Plant and Microbial Biology, University of California, Berkeley, CA, USA.

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http://www.nature.com/articles/s41588-018-0243-4
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http://dx.doi.org/10.1038/s41588-018-0243-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6430122PMC
November 2018

Early Diverging Insect-Pathogenic Fungi of the Order Entomophthorales Possess Diverse and Unique Subtilisin-Like Serine Proteases.

G3 (Bethesda) 2018 10 3;8(10):3311-3319. Epub 2018 Oct 3.

Section for Organismal Biology, Department of Plant and Environmental Sciences, University of Copenhagen, Denmark

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http://dx.doi.org/10.1534/g3.118.200656DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6169396PMC
October 2018

Genome-wide analysis of cytochrome P450s of spp.: annotation and evolutionary relationships.

Fungal Biol Biotechnol 2018 4;5:12. Epub 2018 Jun 4.

1Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085 India.

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http://dx.doi.org/10.1186/s40694-018-0056-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5985579PMC
June 2018

Genome-reconstruction for eukaryotes from complex natural microbial communities.

Genome Res 2018 04 1;28(4):569-580. Epub 2018 Mar 1.

Department of Earth and Planetary Science, University of California, Berkeley, California 94709, USA.

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http://dx.doi.org/10.1101/gr.228429.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5880246PMC
April 2018

The homothallic mating-type locus of the conifer needle endophyte Phialocephala scopiformis DAOMC 229536 (order Helotiales).

Fungal Biol 2017 12 4;121(12):1011-1024. Epub 2017 Sep 4.

Department of Biology, Acadia University, 33 Westwood Avenue, Wolfville, Nova Scotia B4P 2R6, Canada.

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http://dx.doi.org/10.1016/j.funbio.2017.08.007DOI Listing
December 2017

Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales.

BMC Genomics 2017 Nov 16;18(1):883. Epub 2017 Nov 16.

Genetics and Microbiology Research Group, Department of Agrarian Production, Public University of Navarre, 31006, Pamplona, Navarre, Spain.

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http://dx.doi.org/10.1186/s12864-017-4243-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5689174PMC
November 2017

Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi.

Nat Commun 2017 11 29;8(1):1843. Epub 2017 Nov 29.

School of Integrative Plant Science, Plant Pathology and Plant Microbe-Biology, Cornell University, Ithaca, NY, 14853, USA.

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http://dx.doi.org/10.1038/s41467-017-02052-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5705715PMC
November 2017

FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.

Bioinformatics 2017 Sep;33(18):2936-2937

Department of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Korea.

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http://dx.doi.org/10.1093/bioinformatics/btx353DOI Listing
September 2017

The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies.

Microbiol Spectr 2017 09;5(5)

Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803 and Department of Biological Sciences, University of South Carolina, Columbia, SC 29208.

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http://dx.doi.org/10.1128/microbiolspec.FUNK-0053-2016DOI Listing
September 2017

A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism.

PLoS Genet 2017 May 3;13(5):e1006737. Epub 2017 May 3.

The Department of Plant and Microbial Biology, The University of California, Berkeley, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1006737DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435353PMC
May 2017

Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels.

Appl Microbiol Biotechnol 2017 Mar 12;101(6):2603-2618. Epub 2017 Jan 12.

Biomass Science and Conversion Technologies, Sandia National Laboratories, 7011 East Avenue, Livermore, CA, 94551, USA.

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http://dx.doi.org/10.1007/s00253-017-8091-1DOI Listing
March 2017

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

Authors:
Ronald P de Vries Robert Riley Ad Wiebenga Guillermo Aguilar-Osorio Sotiris Amillis Cristiane Akemi Uchima Gregor Anderluh Mojtaba Asadollahi Marion Askin Kerrie Barry Evy Battaglia Özgür Bayram Tiziano Benocci Susanna A Braus-Stromeyer Camila Caldana David Cánovas Gustavo C Cerqueira Fusheng Chen Wanping Chen Cindy Choi Alicia Clum Renato Augusto Corrêa Dos Santos André Ricardo de Lima Damásio George Diallinas Tamás Emri Erzsébet Fekete Michel Flipphi Susanne Freyberg Antonia Gallo Christos Gournas Rob Habgood Matthieu Hainaut María Laura Harispe Bernard Henrissat Kristiina S Hildén Ryan Hope Abeer Hossain Eugenia Karabika Levente Karaffa Zsolt Karányi Nada Kraševec Alan Kuo Harald Kusch Kurt LaButti Ellen L Lagendijk Alla Lapidus Anthony Levasseur Erika Lindquist Anna Lipzen Antonio F Logrieco Andrew MacCabe Miia R Mäkelä Iran Malavazi Petter Melin Vera Meyer Natalia Mielnichuk Márton Miskei Ákos P Molnár Giuseppina Mulé Chew Yee Ngan Margarita Orejas Erzsébet Orosz Jean Paul Ouedraogo Karin M Overkamp Hee-Soo Park Giancarlo Perrone Francois Piumi Peter J Punt Arthur F J Ram Ana Ramón Stefan Rauscher Eric Record Diego Mauricio Riaño-Pachón Vincent Robert Julian Röhrig Roberto Ruller Asaf Salamov Nadhira S Salih Rob A Samson Erzsébet Sándor Manuel Sanguinetti Tabea Schütze Kristina Sepčić Ekaterina Shelest Gavin Sherlock Vicky Sophianopoulou Fabio M Squina Hui Sun Antonia Susca Richard B Todd Adrian Tsang Shiela E Unkles Nathalie van de Wiele Diana van Rossen-Uffink Juliana Velasco de Castro Oliveira Tammi C Vesth Jaap Visser Jae-Hyuk Yu Miaomiao Zhou Mikael R Andersen David B Archer Scott E Baker Isabelle Benoit Axel A Brakhage Gerhard H Braus Reinhard Fischer Jens C Frisvad Gustavo H Goldman Jos Houbraken Berl Oakley István Pócsi Claudio Scazzocchio Bernhard Seiboth Patricia A vanKuyk Jennifer Wortman Paul S Dyer Igor V Grigoriev

Genome Biol 2017 02 14;18(1):28. Epub 2017 Feb 14.

US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.

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http://dx.doi.org/10.1186/s13059-017-1151-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5307856PMC
February 2017

Comparative and transcriptional analysis of the predicted secretome in the lignocellulose-degrading basidiomycete fungus Pleurotus ostreatus.

Environ Microbiol 2016 12 8;18(12):4710-4726. Epub 2016 Jun 8.

Department of Agrarian Production, Genetics and Microbiology Research Group, Public University of Navarre, Pamplona, 31006, Spain.

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http://dx.doi.org/10.1111/1462-2920.13360DOI Listing
December 2016

Lipid metabolic changes in an early divergent fungus govern the establishment of a mutualistic symbiosis with endobacteria.

Proc Natl Acad Sci U S A 2016 12 12;113(52):15102-15107. Epub 2016 Dec 12.

School of Integrative Plant Science, Plant Pathology and Plant-Microbe Biology, Cornell University, Ithaca, NY 14853

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http://dx.doi.org/10.1073/pnas.1615148113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5206550PMC
December 2016

Visual Comparative Omics of Fungi for Plant Biomass Deconstruction.

Front Microbiol 2016 24;7:1335. Epub 2016 Aug 24.

Aix-Marseille Université, INRA, UMR1163, Biodiversité et Biotechnologie Fongiques Marseille, France.

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http://dx.doi.org/10.3389/fmicb.2016.01335DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4996036PMC
September 2016

The mitochondrial genome of the ethanol-metabolizing, wine cellar mold Zasmidium cellare is the smallest for a filamentous ascomycete.

Fungal Biol 2016 08 20;120(8):961-974. Epub 2016 May 20.

U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA.

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http://dx.doi.org/10.1016/j.funbio.2016.05.003DOI Listing
August 2016

Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication.

Curr Biol 2016 06 26;26(12):1577-1584. Epub 2016 May 26.

US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5089372PMC
http://dx.doi.org/10.1016/j.cub.2016.04.038DOI Listing
June 2016

Draft Genome Sequence of Microdochium bolleyi, a Dark Septate Fungal Endophyte of Beach Grass.

Genome Announc 2016 Apr 28;4(2). Epub 2016 Apr 28.

Department of Ecology, Evolution and Behavior, University of Minnesota, Saint Paul, Minnesota, USA Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota, USA

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http://dx.doi.org/10.1128/genomeA.00270-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4850852PMC
April 2016

Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage.

Front Microbiol 2016 3;7:238. Epub 2016 Mar 3.

Department of Earth and Planetary Science, University of California, BerkeleyBerkeley, CA, USA; Department of Environmental Science, Policy, and Management, University of California, BerkeleyBerkeley, CA, USA.

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http://dx.doi.org/10.3389/fmicb.2016.00238DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4776211PMC
March 2016