Publications by authors named "Igor V Grigoriev"

100Publications

The architecture of metabolism maximizes biosynthetic diversity in the largest class of fungi.

Mol Biol Evol 2020 May 18. Epub 2020 May 18.

Department of Plant Pathology, The Ohio State University Columbus, OH, USA.

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http://dx.doi.org/10.1093/molbev/msaa122DOI Listing
May 2020

Draft Genome Assemblies of Ionic Liquid-Resistant Yarrowia lipolytica PO1f and Its Superior Evolved Strain, YlCW001.

Microbiol Resour Announc 2020 Feb 27;9(9). Epub 2020 Feb 27.

Department of Chemical and Biomolecular Engineering, The University of Tennessee, Knoxville, Tennessee, USA

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http://dx.doi.org/10.1128/MRA.01356-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7046820PMC
February 2020

Identification of a gene encoding the last step of the L-rhamnose catabolic pathway in Aspergillus niger revealed the inducer of the pathway regulator.

Microbiol Res 2020 Feb 7;234:126426. Epub 2020 Feb 7.

Fungal Physiology, Westerdijk Fungal Biodiversity Institute & Fungal Molecular Physiology, Utrecht University, Uppsalalaan 8, 3584 CT, Utrecht, the Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.micres.2020.126426DOI Listing
February 2020

Corrigendum to "Mixtures of aromatic compounds induce ligninolytic gene expression in the wood-rotting fungus Dichomitus squalens" [J. Biotechnol. 380 (2020) 35-39].

J Biotechnol 2020 Feb 14;309:142. Epub 2020 Jan 14.

Department of Microbiology, University of Helsinki, P.O. Box 56 (Viikinkaari 9), Biocenter 1, Fl-00014, Helsinki, Finland. Electronic address:

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http://dx.doi.org/10.1016/j.jbiotec.2020.01.006DOI Listing
February 2020

An ectomycorrhizal fungus alters sensitivity to jasmonate, salicylate, gibberellin, and ethylene in host roots.

Plant Cell Environ 2020 04 5;43(4):1047-1068. Epub 2020 Feb 5.

INRA, UMR Interactions Arbres/Microorganismes (IAM), Laboratoire d'excellence Recherches Avancés sur la Biologie de l'Arbre et les Ecosystèmes Forestiers (LabEx ARBRE), Centre INRA Grand-Est, University of Lorraine, Champenoux, France.

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http://dx.doi.org/10.1111/pce.13702DOI Listing
April 2020

Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi.

Metab Eng Commun 2020 Jun 15;10:e00107. Epub 2019 Nov 15.

Department of Chemical Engineering, University of California, Santa Barbara, CA, 93106, USA.

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http://dx.doi.org/10.1016/j.mec.2019.e00107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6883316PMC
June 2020

Mixtures of aromatic compounds induce ligninolytic gene expression in the wood-rotting fungus Dichomitus squalens.

J Biotechnol 2020 Jan 25;308:35-39. Epub 2019 Nov 25.

Department of Microbiology, University of Helsinki, 56 (Viikinkaari 9) Biocenter 1, Fl-00014, Helsinki, Finland. Electronic address:

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http://dx.doi.org/10.1016/j.jbiotec.2019.11.014DOI Listing
January 2020

Fungal ecological strategies reflected in gene transcription - a case study of two litter decomposers.

Environ Microbiol 2020 Mar 8;22(3):1089-1103. Epub 2019 Dec 8.

Laboratoire d'excellence Recherches Avancés sur la Biologie de l'Arbre et les Ecosystèmes Forestiers (LabEx ARBRE), Centre INRA Grand-Est, Université de Lorraine, INRA, UMR Interactions Arbres/Microorganismes (IAM), 54280, Champenoux, France.

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http://dx.doi.org/10.1111/1462-2920.14873DOI Listing
March 2020

Inorganic nitrogen availability alters Eucalyptus grandis receptivity to the ectomycorrhizal fungus Pisolithus albus but not symbiotic nitrogen transfer.

New Phytol 2020 04 17;226(1):221-231. Epub 2019 Dec 17.

Hawkesbury Institute for the Environment, Western Sydney University, Richmond, NSW, 2753, Australia.

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http://dx.doi.org/10.1111/nph.16322DOI Listing
April 2020

Cinnamic Acid and Sorbic acid Conversion Are Mediated by the Same Transcriptional Regulator in .

Front Bioeng Biotechnol 2019 27;7:249. Epub 2019 Sep 27.

Fungal Physiology, Westerdijk Fungal Biodiversity Institute and Fungal Molecular Physiology, Utrecht University, Utrecht, Netherlands.

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http://dx.doi.org/10.3389/fbioe.2019.00249DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6776626PMC
September 2019

Glucose-Mediated Repression of Plant Biomass Utilization in the White-Rot Fungus .

Appl Environ Microbiol 2019 12 14;85(23). Epub 2019 Nov 14.

Fungal Physiology, Westerdijk Fungal Biodiversity Institute & Fungal Molecular Physiology, Utrecht University, Utrecht, The Netherlands

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http://dx.doi.org/10.1128/AEM.01828-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6856337PMC
December 2019

Genome expansion by allopolyploidization in the fungal strain 2T2.1 and its exceptional lignocellulolytic machinery.

Biotechnol Biofuels 2019 23;12:229. Epub 2019 Sep 23.

4Bioenergy Research Unit, National Center for Agricultural Utilization Research, USDA-ARS, Peoria, IL 61604 USA.

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http://dx.doi.org/10.1186/s13068-019-1569-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6757388PMC
September 2019

Yeasts and how they came to be.

Nat Rev Microbiol 2019 11;17(11):649

DOE Joint Genome Institute Walnut Creek, California, USA.

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http://dx.doi.org/10.1038/s41579-019-0274-6DOI Listing
November 2019

Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613.

Appl Microbiol Biotechnol 2019 Oct 3;103(19):8145-8155. Epub 2019 Sep 3.

Department of Biotechnology, College of Life Sciences and Biotechnology and Graduate School, Korea University, Seoul, 02841, South Korea.

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http://dx.doi.org/10.1007/s00253-019-10089-6DOI Listing
October 2019

Evolution and comparative genomics of the most common Trichoderma species.

BMC Genomics 2019 Jun 12;20(1):485. Epub 2019 Jun 12.

Microbiology and Applied Genomics Group, Research Area Biochemical Technology, Institute of Chemical, Environmental & Bioscience Engineering (ICEBE), TU Wien, Vienna, Austria.

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http://dx.doi.org/10.1186/s12864-019-5680-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6560777PMC
June 2019

Deletion of either the regulatory gene or metabolic gene in leads to increased CAZyme gene expression on crude plant biomass.

Biotechnol Biofuels 2019 9;12:81. Epub 2019 Apr 9.

1Fungal Physiology, Westerdijk Fungal Biodiversity Institute & Fungal Molecular Physiology, Utrecht University, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands.

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http://dx.doi.org/10.1186/s13068-019-1422-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6454604PMC
April 2019

Mitovirus and Mitochondrial Coding Sequences from Basal Fungus .

Viruses 2019 04 17;11(4). Epub 2019 Apr 17.

Department of Plant and Environmental Sciences, University of Copenhagen, DK-1871 Frederiksberg, Denmark.

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https://www.mdpi.com/1999-4915/11/4/351
Publisher Site
http://dx.doi.org/10.3390/v11040351DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6520771PMC
April 2019

Broad-specificity GH131 β-glucanases are a hallmark of fungi and oomycetes that colonize plants.

Environ Microbiol 2019 08 21;21(8):2724-2739. Epub 2019 Apr 21.

INRA, Aix-Marseille Univ, UMR1163, Biodiversité et Biotechnologie Fongiques, BBF, Marseille, France.

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http://dx.doi.org/10.1111/1462-2920.14596DOI Listing
August 2019

Fungal Endophytes of Alter Host Phenotype, Gene Expression, and Rhizobiome Composition.

Mol Plant Microbe Interact 2019 Jul 10;32(7):853-864. Epub 2019 Jun 10.

3 Department of Biology, Duke University, Durham, NC, U.S.A.

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http://dx.doi.org/10.1094/MPMI-05-18-0133-RDOI Listing
July 2019

Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota.

New Phytol 2019 04 12;222(1):511-525. Epub 2019 Jan 12.

Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, 97331, USA.

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http://dx.doi.org/10.1111/nph.15613DOI Listing
April 2019

Genetic dissection of interspecific differences in yeast thermotolerance.

Nat Genet 2018 11 8;50(11):1501-1504. Epub 2018 Oct 8.

Department of Plant and Microbial Biology, University of California, Berkeley, CA, USA.

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http://www.nature.com/articles/s41588-018-0243-4
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http://dx.doi.org/10.1038/s41588-018-0243-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6430122PMC
November 2018

An analysis of codon bias in six red yeast species.

Yeast 2019 01 16;36(1):53-64. Epub 2018 Oct 16.

Dipartimento di Agraria, Università degli Studi di Sassari, Sassari, Italy.

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http://dx.doi.org/10.1002/yea.3359DOI Listing
January 2019

Catabolic repression in early-diverging anaerobic fungi is partially mediated by natural antisense transcripts.

Fungal Genet Biol 2018 12 15;121:1-9. Epub 2018 Sep 15.

Department of Chemical Engineering, University of California, Santa Barbara, Santa Barbara, CA 93106, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10871845183011
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http://dx.doi.org/10.1016/j.fgb.2018.09.004DOI Listing
December 2018

Enzymatic Adaptation of Podospora anserina to Different Plant Biomass Provides Leads to Optimized Commercial Enzyme Cocktails.

Biotechnol J 2019 Apr 8;14(4):e1800185. Epub 2018 Oct 8.

Fungal Physiology, Westerdijk Fungal Biodiversity Institute & Fungal Molecular Physiology, Utrecht University, Uppsalalaan 8, 3584, CT, Utrecht, The Netherlands.

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http://doi.wiley.com/10.1002/biot.201800185
Publisher Site
http://dx.doi.org/10.1002/biot.201800185DOI Listing
April 2019

Early Diverging Insect-Pathogenic Fungi of the Order Entomophthorales Possess Diverse and Unique Subtilisin-Like Serine Proteases.

G3 (Bethesda) 2018 10 3;8(10):3311-3319. Epub 2018 Oct 3.

Section for Organismal Biology, Department of Plant and Environmental Sciences, University of Copenhagen, Denmark

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http://dx.doi.org/10.1534/g3.118.200656DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6169396PMC
October 2018

Genome-wide analysis of cytochrome P450s of spp.: annotation and evolutionary relationships.

Fungal Biol Biotechnol 2018 4;5:12. Epub 2018 Jun 4.

1Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085 India.

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http://dx.doi.org/10.1186/s40694-018-0056-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5985579PMC
June 2018

Fungal Genome Annotation.

Methods Mol Biol 2018 ;1775:171-184

United States Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.

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http://dx.doi.org/10.1007/978-1-4939-7804-5_15DOI Listing
February 2019

Introduction: Overview of Fungal Genomics.

Methods Mol Biol 2018 ;1775:1-7

Centre for Structural and Functional Genomics, Concordia University, Montreal, QC, Canada.

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http://dx.doi.org/10.1007/978-1-4939-7804-5_1DOI Listing
February 2019

Talaromyces borbonicus, sp. nov., a novel fungus from biodegraded Arundo donax with potential abilities in lignocellulose conversion.

Mycologia 2018 Mar-Apr;110(2):316-324. Epub 2018 May 29.

a Department of Chemical Sciences , University of Naples Federico II, Complesso Universitario Monte S. Angelo , via Cintia, 4 80126 Naples , Italy.

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http://dx.doi.org/10.1080/00275514.2018.1456835DOI Listing
January 2019

Genome-reconstruction for eukaryotes from complex natural microbial communities.

Genome Res 2018 04 1;28(4):569-580. Epub 2018 Mar 1.

Department of Earth and Planetary Science, University of California, Berkeley, California 94709, USA.

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http://dx.doi.org/10.1101/gr.228429.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5880246PMC
April 2018

Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi.

Nat Commun 2017 11 29;8(1):1843. Epub 2017 Nov 29.

School of Integrative Plant Science, Plant Pathology and Plant Microbe-Biology, Cornell University, Ithaca, NY, 14853, USA.

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http://dx.doi.org/10.1038/s41467-017-02052-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5705715PMC
November 2017

Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales.

BMC Genomics 2017 Nov 16;18(1):883. Epub 2017 Nov 16.

Genetics and Microbiology Research Group, Department of Agrarian Production, Public University of Navarre, 31006, Pamplona, Navarre, Spain.

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http://dx.doi.org/10.1186/s12864-017-4243-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5689174PMC
November 2017

The homothallic mating-type locus of the conifer needle endophyte Phialocephala scopiformis DAOMC 229536 (order Helotiales).

Fungal Biol 2017 12 4;121(12):1011-1024. Epub 2017 Sep 4.

Department of Biology, Acadia University, 33 Westwood Avenue, Wolfville, Nova Scotia B4P 2R6, Canada.

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http://dx.doi.org/10.1016/j.funbio.2017.08.007DOI Listing
December 2017

The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies.

Microbiol Spectr 2017 09;5(5)

Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803 and Department of Biological Sciences, University of South Carolina, Columbia, SC 29208.

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http://dx.doi.org/10.1128/microbiolspec.FUNK-0053-2016DOI Listing
September 2017

FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.

Bioinformatics 2017 Sep;33(18):2936-2937

Department of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Korea.

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http://dx.doi.org/10.1093/bioinformatics/btx353DOI Listing
September 2017

A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism.

PLoS Genet 2017 May 3;13(5):e1006737. Epub 2017 May 3.

The Department of Plant and Microbial Biology, The University of California, Berkeley, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1006737DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435353PMC
May 2017