Igor Polikarpov

Igor Polikarpov

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Igor Polikarpov

Publications by authors named "Igor Polikarpov"

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Evaluating the potential area and environmental key factors for Sargassum bed restoration in highly turbid waters of the northwestern Arabian Gulf.

Mar Pollut Bull 2020 Feb 12;153:110949. Epub 2020 Feb 12.

Environment and Life Sciences Research Center, Kuwait Institute for Scientific Research, Salmiya 22017, Kuwait.

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http://dx.doi.org/10.1016/j.marpolbul.2020.110949DOI Listing
February 2020

The structure of the extended E2 DNA-binding domain of the bovine papillomavirus-1.

Proteins 2020 Jan 1;88(1):106-112. Epub 2019 Aug 1.

Laboratório de Cristalografia, Physics Department, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil.

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http://dx.doi.org/10.1002/prot.25773DOI Listing
January 2020

A novel thermostable GH5 β-xylosidase from Thermogemmatispora sp. T81.

N Biotechnol 2019 Nov 9;53:57-64. Epub 2019 Jul 9.

Sao Carlos Institute of Physics, University of Sao Paulo, São Carlos, São Paulo, Brazil. Electronic address:

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http://dx.doi.org/10.1016/j.nbt.2019.07.002DOI Listing
November 2019

Biochemical characterization and low-resolution SAXS shape of a novel GH11 exo-1,4-β-xylanase identified in a microbial consortium.

Appl Microbiol Biotechnol 2019 Oct 12;103(19):8035-8049. Epub 2019 Aug 12.

Instituto de Física de São Carlos, Universidade de São Paulo, Avenida Trabalhador São-carlense 400, São Carlos, SP, 13566-590, Brazil.

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http://dx.doi.org/10.1007/s00253-019-10033-8DOI Listing
October 2019

Structural insights into the hydrolysis pattern and molecular dynamics simulations of GH45 subfamily a endoglucanase from Neurospora crassa OR74A.

Biochimie 2019 Oct 28;165:275-284. Epub 2019 Aug 28.

São Carlos Institute of Physics, University of São Paulo, São Carlos, São Paulo, Brazil. Electronic address:

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http://dx.doi.org/10.1016/j.biochi.2019.08.016DOI Listing
October 2019

Structure and dynamics of Trichoderma harzianum Cel7B suggest molecular architecture adaptations required for a wide spectrum of activities on plant cell wall polysaccharides.

Biochim Biophys Acta Gen Subj 2019 06 19;1863(6):1015-1026. Epub 2019 Mar 19.

Instituto de Física de São Carlos, Universidade de São Paulo, Av. Trabalhador Sãocarlense, 400, São Carlos SP 13566-590, Brazil. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S03044165193006
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http://dx.doi.org/10.1016/j.bbagen.2019.03.013DOI Listing
June 2019

Biochemical characterization and low-resolution SAXS structure of two-domain endoglucanase BlCel9 from Bacillus licheniformis.

Appl Microbiol Biotechnol 2019 Feb 13;103(3):1275-1287. Epub 2018 Dec 13.

Instituto de Física de São Carlos, Universidade de São Paulo, Av. Trabalhador Saocarlense 400, São Carlos, SP, 13560-970, Brazil.

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http://dx.doi.org/10.1007/s00253-018-9508-1DOI Listing
February 2019

Low-resolution envelope, biophysical analysis and biochemical characterization of a short-chain specific and halotolerant carboxylesterase from Bacillus licheniformis.

Int J Biol Macromol 2018 Dec 2;120(Pt B):1893-1905. Epub 2018 Oct 2.

São Carlos Institute of Physics, University of São Paulo, Av. Trabalhador são-carlense, 400 - Pq. Arnold Schimidt, CEP 13566-590 São Carlos, SP, Brazil. Electronic address:

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http://dx.doi.org/10.1016/j.ijbiomac.2018.10.003DOI Listing
December 2018

Analysis of carbohydrate-active enzymes in Thermogemmatispora sp. strain T81 reveals carbohydrate degradation ability.

Can J Microbiol 2018 Dec 19;64(12):992-1003. Epub 2018 Oct 19.

b Department of Biosystems Engineering, University of Manitoba, Winnipeg, MB R3T 5V6, Canada.

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http://dx.doi.org/10.1139/cjm-2018-0336DOI Listing
December 2018

GH43 endo-arabinanase from Bacillus licheniformis: Structure, activity and unexpected synergistic effect on cellulose enzymatic hydrolysis.

Int J Biol Macromol 2018 Oct 23;117:7-16. Epub 2018 May 23.

Instituto de Física de São Carlos, Universidade de São Paulo. Av. Trabalhador São Carlense, 400. Pq Arnold Schimidt., Sao Carlos, SP 13566-590, Brazil. Electronic address:

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http://dx.doi.org/10.1016/j.ijbiomac.2018.05.157DOI Listing
October 2018

Biochemical characterization, low-resolution SAXS structure and an enzymatic cleavage pattern of BlCel48 from Bacillus licheniformis.

Int J Biol Macromol 2018 May 30;111:302-310. Epub 2017 Dec 30.

Instituto de Física de São Carlos, Universidade de São Paulo, Av. Trabalhador São-carlense, 400, São Carlos, SP CEP 13560-970, Brazil. Electronic address:

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http://dx.doi.org/10.1016/j.ijbiomac.2017.12.138DOI Listing
May 2018

Structural and biochemical characterization of a GH3 β-glucosidase from the probiotic bacteria Bifidobacterium adolescentis.

Biochimie 2018 May 16;148:107-115. Epub 2018 Mar 16.

Instituto de Física de São Carlos, Universidade de São Paulo, Av. Trabalhador Saocarlense, 400. Pq. Arnold Schmidt, São Carlos, SP 13566-590, Brazil. Electronic address:

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http://dx.doi.org/10.1016/j.biochi.2018.03.007DOI Listing
May 2018

Biochemical and biophysical characterization of novel GH10 xylanase prospected from a sugar cane bagasse compost-derived microbial consortia.

Int J Biol Macromol 2018 Apr 20;109:560-568. Epub 2017 Dec 20.

Instituto de Física de São Carlos, Universidade de São Paulo, Avenida Trabalhador São-carlense 400, 13566-590 São Carlos, SP, Brazil. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S01418130173380
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http://dx.doi.org/10.1016/j.ijbiomac.2017.12.099DOI Listing
April 2018

Biochemical and structural insights into a thermostable cellobiohydrolase from Myceliophthora thermophila.

FEBS J 2018 02 1;285(3):559-579. Epub 2018 Jan 1.

São Carlos Institute of Physics, University of São Paulo, Brazil.

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http://doi.wiley.com/10.1111/febs.14356
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http://dx.doi.org/10.1111/febs.14356DOI Listing
February 2018

Structural insights into β-glucosidase transglycosylation based on biochemical, structural and computational analysis of two GH1 enzymes from Trichoderma harzianum.

N Biotechnol 2018 Jan 6;40(Pt B):218-227. Epub 2017 Sep 6.

Instituto de Física de São Carlos, Universidade de São Paulo, Av. Trabalhador Saocarlense, 400, Centro, Sao Carlos, SP 13566-590, Brazil. Electronic address:

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http://dx.doi.org/10.1016/j.nbt.2017.08.012DOI Listing
January 2018

Biochemical characterization and low-resolution SAXS structure of an exo-polygalacturonase from Bacillus licheniformis.

N Biotechnol 2018 Jan 6;40(Pt B):268-274. Epub 2017 Oct 6.

Instituto de Física de São Carlos, Universidade de São Paulo, Avenida Trabalhador Sãocarlense 400, CEP 13566-590 São Carlos, SP, Brazil. Electronic address:

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http://dx.doi.org/10.1016/j.nbt.2017.10.001DOI Listing
January 2018

Structural and biochemical data of GH1 β-glucosidases.

Data Brief 2017 Dec 22;15:340-343. Epub 2017 Sep 22.

Instituto de Física de São Carlos, Universidade de São Paulo, Av. Trabalhador Saocarlense, 400, Centro, Sao Carlos, SP 13566-590, Brazil.

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http://dx.doi.org/10.1016/j.dib.2017.09.044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5712062PMC
December 2017

Targeted metatranscriptomics of compost-derived consortia reveals a GH11 exerting an unusual exo-1,4-β-xylanase activity.

Biotechnol Biofuels 2017 2;10:254. Epub 2017 Nov 2.

Instituto de Física de São Carlos, Universidade de São Paulo, Av. Trabalhador São-carlense 400, São Carlos, SP 13560-970 Brazil.

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http://dx.doi.org/10.1186/s13068-017-0944-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5667448PMC
November 2017

Potential of oleaginous yeast Trichosporon sp., for conversion of sugarcane bagasse hydrolysate into biodiesel.

Bioresour Technol 2017 Oct 28;242:161-168. Epub 2017 Mar 28.

Department of Microbiology, Guru Nanak Dev University, Amritsar, Punjab 143005, India. Electronic address:

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http://dx.doi.org/10.1016/j.biortech.2017.03.155DOI Listing
October 2017

Cellulose ionics: switching ionic diode responses by surface charge in reconstituted cellulose films.

Analyst 2017 Sep;142(19):3707-3714

Department of Chemistry, University of Bath, Claverton Down, Bath BA2 7AY, UK.

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http://dx.doi.org/10.1039/c7an00918fDOI Listing
September 2017

An alternative conformation of ERβ bound to estradiol reveals H12 in a stable antagonist position.

Sci Rep 2017 06 14;7(1):3509. Epub 2017 Jun 14.

São Carlos Institute of Physics, University of São Paulo - USP, P.O. Box 396, São Carlos, SP, Brazil.

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http://dx.doi.org/10.1038/s41598-017-03774-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5471280PMC
June 2017

Revealing the insoluble metasecretome of lignocellulose-degrading microbial communities.

Sci Rep 2017 05 24;7(1):2356. Epub 2017 May 24.

Centre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD, UK.

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http://dx.doi.org/10.1038/s41598-017-02506-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5443780PMC
May 2017

Cloning, heterologous expression and biochemical characterization of a non-specific endoglucanase family 12 from Aspergillus terreus NIH2624.

Biochim Biophys Acta Proteins Proteom 2017 Apr 11;1865(4):395-403. Epub 2017 Jan 11.

Departamento de Física e Informática, Instituto de Física de São Carlos, Universidade de São Paulo, São Carlos, SP, Brazil. Electronic address:

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http://dx.doi.org/10.1016/j.bbapap.2017.01.003DOI Listing
April 2017

Biochemical Characterization and Low-Resolution SAXS Molecular Envelope of GH1 β-Glycosidase from Saccharophagus degradans.

Mol Biotechnol 2016 Dec;58(12):777-788

Instituto de Física de São Carlos, Universidade de São Paulo, Avenida Trabalhador São Carlense 400, São Carlos, SP, 13566-590, Brazil.

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http://dx.doi.org/10.1007/s12033-016-9977-3DOI Listing
December 2016

Nutrient availability shapes the microbial community structure in sugarcane bagasse compost-derived consortia.

Sci Rep 2016 12 12;6:38781. Epub 2016 Dec 12.

Instituto de Física de São Carlos, Universidade de São Paulo, Av. Trabalhador São-carlense 400, São Carlos, SP, 13560-970, Brazil.

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http://dx.doi.org/10.1038/srep38781DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5150498PMC
December 2016

Biophysical and biochemical studies of a major endoglucanase secreted by Xanthomonas campestris pv. campestris.

Enzyme Microb Technol 2016 Sep 21;91:1-7. Epub 2016 May 21.

Instituto de Física de São Carlos, Universidade de São Paulo, Avenida Trabalhador São Carlense 400-Centro, São Carlos-SP 13560-970, Brazil. Electronic address:

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http://dx.doi.org/10.1016/j.enzmictec.2016.05.007DOI Listing
September 2016

Design of an enzyme cocktail consisting of different fungal platforms for efficient hydrolysis of sugarcane bagasse: Optimization and synergism studies.

Biotechnol Prog 2016 09 19;32(5):1222-1229. Epub 2016 Jun 19.

Laboratórios de Desenvolvimento de Bioprocessos, Departamento de Engenharia Bioquímica, Escola de Química, Universidade Federal do Rio de Janeiro, Rio de Janeiro, 21949-900, Brazil.

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http://dx.doi.org/10.1002/btpr.2306DOI Listing
September 2016

Mechanisms of peroxisome proliferator activated receptor γ regulation by non-steroidal anti-inflammatory drugs.

Nucl Recept Signal 2015 5;13:e004. Epub 2015 Oct 5.

Instituto de Física de São Carlos, Universidade de São Paulo, Av. Trabalhador Saocarlense 400, São Carlos, SP, 13560-970, Brazil (ACP, JCLC, AB, IP).

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http://dx.doi.org/10.1621/nrs.13004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4594550PMC
July 2016

Non-productive adsorption of bacterial β-glucosidases on lignins is electrostatically modulated and depends on the presence of fibronection type III-like domain.

Enzyme Microb Technol 2016 Jun 16;87-88:1-8. Epub 2016 Feb 16.

Centro de Ciências Naturais e Humanas (CCNH), Universidade Federal do ABC (UFABC), Santo André, SP, Brazil. Electronic address:

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http://dx.doi.org/10.1016/j.enzmictec.2016.02.007DOI Listing
June 2016

Structural dataset for the PPARγ V290M mutant.

Data Brief 2016 Jun 4;7:1430-1437. Epub 2016 Apr 4.

Instituto de Física de São Carlos, Universidade de São Paulo, Av. Trabalhador Saocarlense 400, São Carlos, SP 13560-970, Brazil.

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http://dx.doi.org/10.1016/j.dib.2016.03.082DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5063799PMC
June 2016

Crystal structure of a putative exo-β-1,3-galactanase from Bifidobacterium bifidum S17.

Acta Crystallogr F Struct Biol Commun 2016 Apr 16;72(Pt 4):288-93. Epub 2016 Mar 16.

Departamento de Física em São Carlos, Universidade de São Paulo, Avenida Trabalhador Saocarlense 400, 13560-970 São Carlos-SP, Brazil.

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http://scripts.iucr.org/cgi-bin/paper?S2053230X16003617
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http://dx.doi.org/10.1107/S2053230X16003617DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4822985PMC
April 2016

HTP-OligoDesigner: An Online Primer Design Tool for High-Throughput Gene Cloning and Site-Directed Mutagenesis.

J Comput Biol 2016 Jan 5;23(1):27-9. Epub 2015 Nov 5.

1 Grupo de Biotecnologia Molecular, Instituto de Física de São Carlos, Universidade de São Paulo , São Carlos, São Paulo, Brazil .

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http://dx.doi.org/10.1089/cmb.2015.0148DOI Listing
January 2016

The characterization of the endoglucanase Cel12A from Gloeophyllum trabeum reveals an enzyme highly active on β-glucan.

PLoS One 2014 24;9(9):e108393. Epub 2014 Sep 24.

Grupo de Biotecnologia Molecular, Instituto de Física de São Carlos, Universidade de São Paulo, São Carlos, SP, Brazil.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0108393PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4177221PMC
December 2015

Xanthomonas campestris expansin-like X domain is a structurally disordered beta-sheet macromolecule capable of synergistically enhancing enzymatic efficiency of cellulose hydrolysis.

Biotechnol Lett 2015 Dec 14;37(12):2419-26. Epub 2015 Aug 14.

Departamento de Física e Ciência Interdisciplinar, Instituto de Física de São Carlos, Universidade de São Paulo, Avenida Trabalhador 8 São Carlense 400 - Centro, São Carlos, SP, 13560-970, Brazil.

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http://dx.doi.org/10.1007/s10529-015-1927-9DOI Listing
December 2015

Recombinant Trichoderma harzianum endoglucanase I (Cel7B) is a highly acidic and promiscuous carbohydrate-active enzyme.

Appl Microbiol Biotechnol 2015 Nov 9;99(22):9591-604. Epub 2015 Jul 9.

Departamento de Física e Informática, Instituto de Física de São Carlos, Universidade de São Paulo, Av. Trabalhador Sãocarlense, 400, São Carlos, SP, 13566-590, Brazil.

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http://dx.doi.org/10.1007/s00253-015-6772-1DOI Listing
November 2015

Sets of covariant residues modulate the activity and thermal stability of GH1 β-glucosidases.

PLoS One 2014 7;9(5):e96627. Epub 2014 May 7.

Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, SP, Brazil.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0096627PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4013033PMC
October 2015

Different binding and recognition modes of GL479, a dual agonist of Peroxisome Proliferator-Activated Receptor α/γ.

J Struct Biol 2015 Sep 14;191(3):332-40. Epub 2015 Jul 14.

Grupo de Biotecnologia Molecular, Instituto de Física de São Carlos, Universidade de São Paulo, São Carlos, SP 13566-590, Brazil. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10478477153003
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http://dx.doi.org/10.1016/j.jsb.2015.07.006DOI Listing
September 2015

A Novel Member of GH16 Family Derived from Sugarcane Soil Metagenome.

Appl Biochem Biotechnol 2015 Sep 5;177(2):304-17. Epub 2015 Aug 5.

Laboratório Nacional de Ciência e Tecnologia do Bioetanol (CTBE), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Campinas, SP, 13083-100, Brazil,

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http://dx.doi.org/10.1007/s12010-015-1743-7DOI Listing
September 2015

Quantitative (13)C MultiCP solid-state NMR as a tool for evaluation of cellulose crystallinity index measured directly inside sugarcane biomass.

Biotechnol Biofuels 2015 5;8:110. Epub 2015 Aug 5.

Instituto de Física de São Carlos, Universidade de São Paulo, Caixa Postal 369, São Carlos, SP 13660-970 Brazil.

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http://dx.doi.org/10.1186/s13068-015-0292-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4524013PMC
August 2015

Functional Characterization and Low-Resolution Structure of an Endoglucanase Cel45A from the Filamentous Fungus Neurospora crassa OR74A: Thermostable Enzyme with High Activity Toward Lichenan and β-Glucan.

Mol Biotechnol 2015 Jun;57(6):574-88

Instituto de Física de São Carlos, Universidade de São Paulo, Avenida Trabalhador São Carlense 400, São Carlos, SP, 13566-590, Brazil.

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http://dx.doi.org/10.1007/s12033-015-9851-8DOI Listing
June 2015

Response to Moras et al.

Trends Biochem Sci 2015 Jun 15;40(6):290-2. Epub 2015 Apr 15.

Instituto de Física de São Carlos (IFSC), Universidade de São Paulo (USP), Avenida Trabalhador São-Carlense 400, São Carlos, SP, 13560-970 Brazil.

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http://dx.doi.org/10.1016/j.tibs.2015.03.008DOI Listing
June 2015

Crystal structure analysis of peroxidase from the palm tree Chamaerops excelsa.

Biochimie 2015 Apr 7;111:58-69. Epub 2015 Feb 7.

Instituto de Física de São Carlos, Universidade de São Paulo, Av. Trabalhador Sãocarlense 400, São Carlos, SP 13560-970, Brazil. Electronic address:

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http://dx.doi.org/10.1016/j.biochi.2015.01.014DOI Listing
April 2015

Cloning, purification, crystallization and preliminary X-ray studies of a carbohydrate-binding module from family 64 (StX).

Acta Crystallogr F Struct Biol Commun 2015 Mar 19;71(Pt 3):311-4. Epub 2015 Feb 19.

Laboratório Nacional de Ciência e Tecnologia do Bioetanol (CTBE), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Campinas, São Paulo, Brazil.

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http://dx.doi.org/10.1107/S2053230X15002198DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4356307PMC
March 2015

RXR agonist modulates TR: corepressor dissociation upon 9-cis retinoic acid treatment.

Mol Endocrinol 2015 Feb 26;29(2):258-73. Epub 2014 Dec 26.

Centro Nacional de Pesquisa em Energia e Materiais (J.F., J.L.O.C., T.R.D., L.M.A., M.T.V., J.X.-N., A.C.M.F.), Laboratório Nacional de Biociências, Campinas SP, 13083-970, Brazil; and Instituto de Física de São Carlos (I.P.), Universidade de São Paulo, São Carlos SP, 13560-970, Brazil.

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http://dx.doi.org/10.1210/me.2014-1251DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5414759PMC
February 2015

Nuclear receptor full-length architectures: confronting myth and illusion with high resolution.

Trends Biochem Sci 2015 Jan 28;40(1):16-24. Epub 2014 Nov 28.

Instituto de Física de São Carlos, Universidade de São Paulo, Av. Trabalhador São-Carlense, 400, São Carlos, SP, 13560-970, Brazil.

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http://dx.doi.org/10.1016/j.tibs.2014.10.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4274238PMC
January 2015

Transcriptome profile of Trichoderma harzianum IOC-3844 induced by sugarcane bagasse.

PLoS One 2014 18;9(2):e88689. Epub 2014 Feb 18.

Center for Molecular Biology and Genetic Engineering (CBMEG), University of Campinas (UNICAMP), Campinas, SP, Brazil ; Department of Plant Biology, Biology Institute, University of Campinas (UNICAMP), Campinas, SP, Brazil.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0088689PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3928278PMC
December 2014

Nuclear magnetic resonance investigation of water accessibility in cellulose of pretreated sugarcane bagasse.

Biotechnol Biofuels 2014 10;7(1):127. Epub 2014 Sep 10.

Instituto de Física de São Carlos, Universidade de São Paulo, Caixa Postal 369, CEP 13560-970 São Carlos, SP Brazil.

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http://dx.doi.org/10.1186/s13068-014-0127-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4172860PMC
October 2014

Cloning, purification, crystallization and preliminary X-ray studies of a carbohydrate-binding module (CBM_E1) derived from sugarcane soil metagenome.

Acta Crystallogr F Struct Biol Commun 2014 Sep 27;70(Pt 9):1232-5. Epub 2014 Aug 27.

Laboratório Nacional de Ciências e Tecnologia do Bioetanol (CTBE), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Campinas, São Paulo, Brazil.

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http://dx.doi.org/10.1107/S2053230X14015520DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4157425PMC
September 2014

High-throughput cloning, expression and purification of glycoside hydrolases using Ligation-Independent Cloning (LIC).

Protein Expr Purif 2014 Jul 26;99:35-42. Epub 2014 Mar 26.

Departamento de Física e Informática, Instituto de Física de São Carlos, Universidade de São Paulo, Av. Trabalhador Sãocarlense, 400, 13566-590 São Carlos, SP, Brazil. Electronic address:

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http://dx.doi.org/10.1016/j.pep.2014.03.008DOI Listing
July 2014

SAXS Studies of the Endoglucanase Cel12A from Show Its Monomeric Structure and Reveal the Influence of Temperature on the Structural Stability of the Enzyme.

Materials (Basel) 2014 Jul 17;7(7):5202-5211. Epub 2014 Jul 17.

Grupo de Biotecnologia Molecular, Instituto de Física de São Carlos, Universidade de São Paulo, Av. Trabalhador São-Carlense 400, Arnold Schimidt, São Carlos, SP 13566-590, Brazil.

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http://dx.doi.org/10.3390/ma7075202DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5455812PMC
July 2014

Family 1 carbohydrate binding-modules enhance saccharification rates.

AMB Express 2014 25;4:36. Epub 2014 Apr 25.

Grupo de Biotecnologia Molecular, Instituto de Física de São Carlos, Universidade de São Paulo. Av. Trabalhador Sancarlense, São Carlos CEP 13560-970, SP, Brazil.

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http://dx.doi.org/10.1186/s13568-014-0036-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4052752PMC
June 2014

Expression, purification, crystallization and preliminary X-ray diffraction analysis of the pectin methylesterase from the sugar cane weevil Sphenophorus levis.

Acta Crystallogr F Struct Biol Commun 2014 Mar 19;70(Pt 3):331-4. Epub 2014 Feb 19.

Instituto de Física de São Carlos, Universidade de São Paulo, Avenida Trabalhador Sãocarlense 400, 13566-590 São Carlos-SP, Brazil.

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March 2014

Expression, purification, crystallization and preliminary X-ray diffraction analysis of Aspergillus terreus endo-β-1,4-glucanase from glycoside hydrolase family 12.

Acta Crystallogr F Struct Biol Commun 2014 Feb 28;70(Pt 2):267-70. Epub 2014 Jan 28.

Instituto de Física de São Carlos, Universidade de São Paulo, Avenida Trabalhador Saocarlense 400, 13566-590 São Carlos-SP, Brazil.

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February 2014

Structure-based identification of novel PPAR gamma ligands.

Bioorg Med Chem Lett 2013 Nov 8;23(21):5795-802. Epub 2013 Sep 8.

Universidade Federal do ABC, Rua Santa Adelia, 166 Bangu, Santo Andre, SP 09210-170, Brazil.

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November 2013

Molecular mechanism of peroxisome proliferator-activated receptor α activation by WY14643: a new mode of ligand recognition and receptor stabilization.

J Mol Biol 2013 Aug 21;425(16):2878-93. Epub 2013 May 21.

Institute of Physics of São Carlos, University of São Paulo, Avenida Trabalhador Sãocarlense 400, São Carlos, SP 13560-970, Brazil.

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August 2013

Crystallization and preliminary X-ray diffraction analysis of a new xyloglucanase from Xanthomonas campestris pv. campestris.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2013 Jun 25;69(Pt 6):676-8. Epub 2013 May 25.

Instituto de Física de São Carlos, Universidade de São Paulo, 400 Trabalhador Saocarlense, 13566-590 São Carlos, SP, Brazil.

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June 2013

Expression, purification, crystallization and preliminary X-ray diffraction analysis of Bifidobacterium adolescentis xylose isomerase.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2013 May 30;69(Pt 5):588-91. Epub 2013 Apr 30.

Instituto de Física de São Carlos, Universidade de São Paulo, Trabalhador São Carlense 400, 13566-590 São Carlos-SP, Brazil.

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May 2013

Inhibition of human transthyretin aggregation by non-steroidal anti-inflammatory compounds: a structural and thermodynamic analysis.

Int J Mol Sci 2013 Mar 6;14(3):5284-311. Epub 2013 Mar 6.

Institute of Medical Biochemistry, Structural Biology Program, Federal University of Rio de Janeiro, Rio de Janeiro, RJ 21941-590, Brazil.

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March 2013

Crystallization and preliminary diffraction analysis of the catalytic domain of major extracellular endoglucanase from Xanthomonas campestris pv. campestris.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2013 Feb 31;69(Pt 2):137-40. Epub 2013 Jan 31.

Instituto de Física de São Carlos, Universidade de São Paulo, Avenida Trabalhador Saocarlense 400, São Carlos-SP 13560-970, Brazil.

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February 2013

Flavonoid interactions with human transthyretin: combined structural and thermodynamic analysis.

J Struct Biol 2012 Oct 25;180(1):143-53. Epub 2012 Jul 25.

Instituto de Física de São Carlos, Universidade de São Paulo, 13560-970 São Carlos, SP, Brazil.

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October 2012

Fluorescence spectroscopy as a tool to detect and evaluate glucocorticoid-induced skin atrophy.

Lasers Med Sci 2012 Sep 17;27(5):1059-65. Epub 2012 Jan 17.

Postgraduate Program in Biotechnology, Federal University of São Carlos, São Carlos, SP, Brazil.

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September 2012

Crystallization and preliminary X-ray diffraction analysis of endoglucanase III from Trichoderma harzianum.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2012 Mar 23;68(Pt 3):306-9. Epub 2012 Feb 23.

Instituto de Física de São Carlos, Universidade de São Paulo, Avenida Trabalhador Sãocarlense 400, 13566-590 São Carlos-SP, Brazil.

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March 2012

Effect of pH and temperature on the global compactness, structure, and activity of cellobiohydrolase Cel7A from Trichoderma harzianum.

Eur Biophys J 2012 Jan 3;41(1):89-98. Epub 2011 Nov 3.

Grupo de Cristalografia, Instituto de Física de São Carlos, Universidade de São Paulo, Av. Trabalhador Sao Carlense 400, São Carlos, SP, Brazil.

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January 2012

Purification, crystallization and preliminary crystallographic analysis of peroxidase from the palm tree Chamaerops excelsa.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2011 Dec 30;67(Pt 12):1641-4. Epub 2011 Nov 30.

Instituto de Física de São Carlos, Universidade de São Paulo, São Carlos-SP, Brazil.

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December 2011

Chemical and morphological characterization of sugarcane bagasse submitted to a delignification process for enhanced enzymatic digestibility.

Biotechnol Biofuels 2011 Nov 28;4(1):54. Epub 2011 Nov 28.

Instituto de Física de São Carlos, Universidade de São Paulo, Caixa Postal 369, CEP 13560-970, São Carlos, SP, Brazil.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3377919PMC
November 2011

Molecular basis of the thermostability and thermophilicity of laminarinases: X-ray structure of the hyperthermostable laminarinase from Rhodothermus marinus and molecular dynamics simulations.

J Phys Chem B 2011 Jun 27;115(24):7940-9. Epub 2011 May 27.

Institute of Physics of São Carlos, University of São Paulo, Avenida Trabalhador São-Carlense, 400, CEP 13560-970 São Carlos, SP, Brazil.

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June 2011

The binding of synthetic triiodo l-thyronine analogs to human transthyretin: molecular basis of cooperative and non-cooperative ligand recognition.

J Struct Biol 2011 Feb 16;173(2):323-32. Epub 2010 Oct 16.

Instituto de Física de São Carlos-Universidade de São Paulo, São Carlos, SP, Brazil.

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February 2011