Igor Antoshechkin

Igor Antoshechkin

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Igor Antoshechkin

Igor Antoshechkin

Publications by authors named "Igor Antoshechkin"

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33Publications

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Engineered resistance to Zika virus in transgenic expressing a polycistronic cluster of synthetic small RNAs.

Proc Natl Acad Sci U S A 2019 02 5;116(9):3656-3661. Epub 2019 Feb 5.

Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA 92093;

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http://dx.doi.org/10.1073/pnas.1810771116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6397566PMC
February 2019

Improved reference genome of Aedes aegypti informs arbovirus vector control.

Nature 2018 11 14;563(7732):501-507. Epub 2018 Nov 14.

Laboratory of Neurogenetics and Behavior, The Rockefeller University, New York, NY, USA.

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http://www.nature.com/articles/s41586-018-0692-z
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http://dx.doi.org/10.1038/s41586-018-0692-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6421076PMC
November 2018

Integrated measurement of intracellular proteins and transcripts in single cells.

Lab Chip 2018 10;18(21):3251-3262

California Institute of Techology, Division of Chemistry and Chemical Engineering, Pasadena, CA, USA.

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http://dx.doi.org/10.1039/c8lc00639cDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6752714PMC
October 2018

The Female-Like State: Decoupling the Transcriptomic Effects of Aging and Sperm Status.

G3 (Bethesda) 2017 09 7;7(9):2969-2977. Epub 2017 Sep 7.

Department of Biology and Biological Engineering, and Howard Hughes Medical Institute, Caltech, Pasadena, California 91125

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http://g3journal.org/lookup/doi/10.1534/g3.117.300080
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http://dx.doi.org/10.1534/g3.117.300080DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5592924PMC
September 2017

Stepwise metamorphosis of the tubeworm Hydroides elegans is mediated by a bacterial inducer and MAPK signaling.

Proc Natl Acad Sci U S A 2016 09 22;113(36):10097-102. Epub 2016 Aug 22.

Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125; Howard Hughes Medical Institute, California Institute of Technology, Pasadena, CA 91125.

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http://dx.doi.org/10.1073/pnas.1603142113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5018781PMC
September 2016

The genome and transcriptome of the zoonotic hookworm Ancylostoma ceylanicum identify infection-specific gene families.

Nat Genet 2015 Apr 2;47(4):416-22. Epub 2015 Mar 2.

1] Program in Molecular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts, USA. [2] Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, California, USA.

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http://dx.doi.org/10.1038/ng.3237DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617383PMC
April 2015

Novel synthetic Medea selfish genetic elements drive population replacement in Drosophila; a theoretical exploration of Medea-dependent population suppression.

ACS Synth Biol 2014 Dec 28;3(12):915-28. Epub 2012 Dec 28.

Division of Biology, MC 156-29, California Institute of Technology , Pasadena, California 91125, United States.

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http://dx.doi.org/10.1021/sb300079hDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3742681PMC
December 2014

A comparative encyclopedia of DNA elements in the mouse genome.

Authors:
Feng Yue Yong Cheng Alessandra Breschi Jeff Vierstra Weisheng Wu Tyrone Ryba Richard Sandstrom Zhihai Ma Carrie Davis Benjamin D Pope Yin Shen Dmitri D Pervouchine Sarah Djebali Robert E Thurman Rajinder Kaul Eric Rynes Anthony Kirilusha Georgi K Marinov Brian A Williams Diane Trout Henry Amrhein Katherine Fisher-Aylor Igor Antoshechkin Gilberto DeSalvo Lei-Hoon See Meagan Fastuca Jorg Drenkow Chris Zaleski Alex Dobin Pablo Prieto Julien Lagarde Giovanni Bussotti Andrea Tanzer Olgert Denas Kanwei Li M A Bender Miaohua Zhang Rachel Byron Mark T Groudine David McCleary Long Pham Zhen Ye Samantha Kuan Lee Edsall Yi-Chieh Wu Matthew D Rasmussen Mukul S Bansal Manolis Kellis Cheryl A Keller Christapher S Morrissey Tejaswini Mishra Deepti Jain Nergiz Dogan Robert S Harris Philip Cayting Trupti Kawli Alan P Boyle Ghia Euskirchen Anshul Kundaje Shin Lin Yiing Lin Camden Jansen Venkat S Malladi Melissa S Cline Drew T Erickson Vanessa M Kirkup Katrina Learned Cricket A Sloan Kate R Rosenbloom Beatriz Lacerda de Sousa Kathryn Beal Miguel Pignatelli Paul Flicek Jin Lian Tamer Kahveci Dongwon Lee W James Kent Miguel Ramalho Santos Javier Herrero Cedric Notredame Audra Johnson Shinny Vong Kristen Lee Daniel Bates Fidencio Neri Morgan Diegel Theresa Canfield Peter J Sabo Matthew S Wilken Thomas A Reh Erika Giste Anthony Shafer Tanya Kutyavin Eric Haugen Douglas Dunn Alex P Reynolds Shane Neph Richard Humbert R Scott Hansen Marella De Bruijn Licia Selleri Alexander Rudensky Steven Josefowicz Robert Samstein Evan E Eichler Stuart H Orkin Dana Levasseur Thalia Papayannopoulou Kai-Hsin Chang Arthur Skoultchi Srikanta Gosh Christine Disteche Piper Treuting Yanli Wang Mitchell J Weiss Gerd A Blobel Xiaoyi Cao Sheng Zhong Ting Wang Peter J Good Rebecca F Lowdon Leslie B Adams Xiao-Qiao Zhou Michael J Pazin Elise A Feingold Barbara Wold James Taylor Ali Mortazavi Sherman M Weissman John A Stamatoyannopoulos Michael P Snyder Roderic Guigo Thomas R Gingeras David M Gilbert Ross C Hardison Michael A Beer Bing Ren

Nature 2014 Nov;515(7527):355-64

Ludwig Institute for Cancer Research and University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, California 92093, USA.

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http://dx.doi.org/10.1038/nature13992DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4266106PMC
November 2014

Transcriptome analysis reveals novel players in the cranial neural crest gene regulatory network.

Genome Res 2014 Feb 3;24(2):281-90. Epub 2014 Jan 3.

Division of Biology, California Institute of Technology, Pasadena, California 91125, USA;

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http://dx.doi.org/10.1101/gr.161182.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3912418PMC
February 2014

Pol II docking and pausing at growth and stress genes in C. elegans.

Cell Rep 2014 Feb 30;6(3):455-66. Epub 2014 Jan 30.

Department of Biology, Duke Center for Systems Biology, Duke University, Durham, NC 27708, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2014.01.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4026043PMC
February 2014

Transgene-free genome editing in Caenorhabditis elegans using CRISPR-Cas.

Genetics 2013 Nov 26;195(3):1167-71. Epub 2013 Aug 26.

Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California 91125.

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http://dx.doi.org/10.1534/genetics.113.155879DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3813845PMC
November 2013

Transcriptome profiling of Nasonia vitripennis testis reveals novel transcripts expressed from the selfish B chromosome, paternal sex ratio.

G3 (Bethesda) 2013 Sep 4;3(9):1597-605. Epub 2013 Sep 4.

Division of Biology, MC156-29, California Institute of Technology, Pasadena, California 91125.

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http://g3journal.org/lookup/doi/10.1534/g3.113.007583
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http://dx.doi.org/10.1534/g3.113.007583DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3755920PMC
September 2013

Divergent mitochondrial biogenesis responses in human cardiomyopathy.

Circulation 2013 May 15;127(19):1957-67. Epub 2013 Apr 15.

Department of Anesthesiology, Division of Molecular Medicine, David Geffen School of Medicine at UCLA, BH-569 CHS, BOX 957115, Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.1161/CIRCULATIONAHA.112.001219DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4236313PMC
May 2013

Nutritional control of mRNA isoform expression during developmental arrest and recovery in C. elegans.

Genome Res 2012 Oct 26;22(10):1920-9. Epub 2012 Apr 26.

Department of Biology, Duke Center for Systems Biology, Duke University, Durham, North Carolina 27708, USA.

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http://dx.doi.org/10.1101/gr.133587.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3460187PMC
October 2012

Landscape of transcription in human cells.

Nature 2012 Sep;489(7414):101-8

Centre for Genomic Regulation and UPF, Doctor Aiguader 88, Barcelona 08003, Catalonia, Spain.

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http://dx.doi.org/10.1038/nature11233DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3684276PMC
September 2012

Inviability of a DNA2 deletion mutant is due to the DNA damage checkpoint.

Cell Cycle 2011 May 15;10(10):1690-8. Epub 2011 May 15.

California Institute of Technology, Pasadena, CA USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3127164PMC
http://dx.doi.org/10.4161/cc.10.10.15643DOI Listing
May 2011

Scaffolding a Caenorhabditis nematode genome with RNA-seq.

Genome Res 2010 Dec 27;20(12):1740-7. Epub 2010 Oct 27.

Division of Biology, California Institute of Technology, Pasadena, California 91125, USA.

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http://dx.doi.org/10.1101/gr.111021.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2990000PMC
December 2010

The versatile worm: genetic and genomic resources for Caenorhabditis elegans research.

Nat Rev Genet 2007 Jul 5;8(7):518-32. Epub 2007 Jun 5.

Division of Biology 156-29, California Institute of Technology, 1200 East California Boulevard, Pasadena, California 91125, USA.

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http://dx.doi.org/10.1038/nrg2105DOI Listing
July 2007

WormBook: the online review of Caenorhabditis elegans biology.

Nucleic Acids Res 2007 Jan 11;35(Database issue):D472-5. Epub 2006 Nov 11.

Division of Biology, 156-29, Pasadena, CA 91125, USA.

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http://dx.doi.org/10.1093/nar/gkl894DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1669767PMC
January 2007

Caenorhabditis elegans EVL-14/PDS-5 and SCC-3 are essential for sister chromatid cohesion in meiosis and mitosis.

Mol Cell Biol 2003 Nov;23(21):7698-707

Institute of Developmental Biology and Molecular Medicine, School of Life Science, Fudan University, Shanghai, China 200433.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC207601PMC
http://dx.doi.org/10.1128/mcb.23.21.7698-7707.2003DOI Listing
November 2003

The C. elegans evl-20 gene is a homolog of the small GTPase ARL2 and regulates cytoskeleton dynamics during cytokinesis and morphogenesis.

Dev Cell 2002 May;2(5):579-91

Department of Molecular, Cellular, and Developmental Biology, Howard Hughes Medical Institute, University of Colorado, Boulder, CO 80309, USA.

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May 2002