Ian Small

Ian Small

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Ian Small

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Evolutionary Model of Plastidial RNA Editing in Angiosperms Presumed from Genome-Wide Analysis of Amborella trichopoda.

Plant Cell Physiol 2019 Oct;60(10):2141-2151

Department of Botany, Graduate School of Science, Kyoto University, Oiwake-cho, Kitashirakawa, Sakyo-ku, Kyoto, Japan.

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http://dx.doi.org/10.1093/pcp/pcz111DOI Listing
October 2019

The coordinated action of PPR4 and EMB2654 on each intron half mediates trans-splicing of rps12 transcripts in plant chloroplasts.

Plant J 2019 Aug 23. Epub 2019 Aug 23.

Department of Applied Biology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju, 61186, Korea.

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http://dx.doi.org/10.1111/tpj.14509DOI Listing
August 2019

Simulation of heterosis in a genome-scale metabolic network provides mechanistic explanations for increased biomass production rates in hybrid plants.

NPJ Syst Biol Appl 2019 18;5:24. Epub 2019 Jul 18.

1Australian Research Council Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia, Crawley, WA 6009 Australia.

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http://dx.doi.org/10.1038/s41540-019-0101-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6639380PMC
July 2019

Comparison of Progress of Brown Rust and Orange Rust and Conditions Conducive for Severe Epidemic Development During the Sugarcane Crop Season in Florida.

Plant Dis 2019 May 25;103(5):825-831. Epub 2019 Feb 25.

1 Everglades Research and Education Center, Plant Pathology Department, University of Florida, Belle Glade, FL 33430.

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http://dx.doi.org/10.1094/PDIS-05-18-0862-REDOI Listing
May 2019

The E domain of CRR2 participates in sequence-specific recognition of RNA in plastids.

New Phytol 2019 04 6;222(1):218-229. Epub 2018 Dec 6.

Australian Research Council Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, 6009, WA, Australia.

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http://dx.doi.org/10.1111/nph.15578DOI Listing
April 2019

Genome-scale transfer of mitochondrial DNA from legume hosts to the holoparasite Lophophytum mirabile (Balanophoraceae).

Mol Phylogenet Evol 2019 03 7;132:243-250. Epub 2018 Dec 7.

ARC Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia (M316), 35 Stirling Highway, 6009 Crawley, Australia.

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https://linkinghub.elsevier.com/retrieve/pii/S10557903183057
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http://dx.doi.org/10.1016/j.ympev.2018.12.006DOI Listing
March 2019

Transplastomic Arabidopsis plants at last.

Authors:
Ian Small

Nat Plants 2019 03;5(3):249-250

ARC Centre of Excellence in Plant Energy Biology, University of Western Australia, Perth, Western Australia, Australia.

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http://dx.doi.org/10.1038/s41477-019-0388-xDOI Listing
March 2019

Plastome-Wide Rearrangements and Gene Losses in Carnivorous Droseraceae.

Genome Biol Evol 2019 02;11(2):472-485

Australian Research Council Centre of Excellence in Plant Energy Biology, The University of Western Australia, Crawley, Western Australia, Australia.

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http://dx.doi.org/10.1093/gbe/evz005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6380313PMC
February 2019

High intraspecific diversity of Restorer-of-fertility-like genes in barley.

Plant J 2019 Jan 9;97(2):281-295. Epub 2018 Nov 9.

ARC Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia, Crawley, WA, Australia.

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http://doi.wiley.com/10.1111/tpj.14115
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http://dx.doi.org/10.1111/tpj.14115DOI Listing
January 2019

Targeted cleavage of mRNA induced by a modified pentatricopeptide repeat protein in plant mitochondria.

Commun Biol 2018 11;1:166. Epub 2018 Oct 11.

Australian Research Council Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia, Crawley, WA 6009 Australia.

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http://dx.doi.org/10.1038/s42003-018-0166-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6181959PMC
October 2018

Shifting the limits in wheat research and breeding using a fully annotated reference genome.

Authors:
Rudi Appels Kellye Eversole Catherine Feuillet Beat Keller Jane Rogers Nils Stein Curtis J Pozniak Nils Stein Frédéric Choulet Assaf Distelfeld Kellye Eversole Jesse Poland Jane Rogers Gil Ronen Andrew G Sharpe Curtis Pozniak Gil Ronen Nils Stein Omer Barad Kobi Baruch Frédéric Choulet Gabriel Keeble-Gagnère Martin Mascher Andrew G Sharpe Gil Ben-Zvi Ambre-Aurore Josselin Nils Stein Martin Mascher Axel Himmelbach Frédéric Choulet Gabriel Keeble-Gagnère Martin Mascher Jane Rogers François Balfourier Juan Gutierrez-Gonzalez Matthew Hayden Ambre-Aurore Josselin ChuShin Koh Gary Muehlbauer Raj K Pasam Etienne Paux Curtis J Pozniak Philippe Rigault Andrew G Sharpe Josquin Tibbits Vijay Tiwari Frédéric Choulet Gabriel Keeble-Gagnère Martin Mascher Ambre-Aurore Josselin Jane Rogers Manuel Spannagl Frédéric Choulet Daniel Lang Heidrun Gundlach Georg Haberer Gabriel Keeble-Gagnère Klaus F X Mayer Danara Ormanbekova Etienne Paux Verena Prade Hana Šimková Thomas Wicker Frédéric Choulet Manuel Spannagl David Swarbreck Hélène Rimbert Marius Felder Nicolas Guilhot Heidrun Gundlach Georg Haberer Gemy Kaithakottil Jens Keilwagen Daniel Lang Philippe Leroy Thomas Lux Klaus F X Mayer Sven Twardziok Luca Venturini Rudi Appels Hélène Rimbert Frédéric Choulet Angéla Juhász Gabriel Keeble-Gagnère Frédéric Choulet Manuel Spannagl Daniel Lang Michael Abrouk Georg Haberer Gabriel Keeble-Gagnère Klaus F X Mayer Thomas Wicker Frédéric Choulet Thomas Wicker Heidrun Gundlach Daniel Lang Manuel Spannagl Daniel Lang Manuel Spannagl Rudi Appels Iris Fischer Cristobal Uauy Philippa Borrill Ricardo H Ramirez-Gonzalez Rudi Appels Dominique Arnaud Smahane Chalabi Boulos Chalhoub Frédéric Choulet Aron Cory Raju Datla Mark W Davey Matthew Hayden John Jacobs Daniel Lang Stephen J Robinson Manuel Spannagl Burkhard Steuernagel Josquin Tibbits Vijay Tiwari Fred van Ex Brande B H Wulff Curtis J Pozniak Stephen J Robinson Andrew G Sharpe Aron Cory Moussa Benhamed Etienne Paux Abdelhafid Bendahmane Lorenzo Concia David Latrasse Jane Rogers John Jacobs Michael Alaux Rudi Appels Jan Bartoš Arnaud Bellec Hélène Berges Jaroslav Doležel Catherine Feuillet Zeev Frenkel Bikram Gill Abraham Korol Thomas Letellier Odd-Arne Olsen Hana Šimková Kuldeep Singh Miroslav Valárik Edwin van der Vossen Sonia Vautrin Song Weining Abraham Korol Zeev Frenkel Tzion Fahima Vladimir Glikson Dina Raats Jane Rogers Vijay Tiwari Bikram Gill Etienne Paux Jesse Poland Jaroslav Doležel Jarmila Číhalíková Hana Šimková Helena Toegelová Jan Vrána Pierre Sourdille Benoit Darrier Rudi Appels Manuel Spannagl Daniel Lang Iris Fischer Danara Ormanbekova Verena Prade Delfina Barabaschi Luigi Cattivelli Pilar Hernandez Sergio Galvez Hikmet Budak Burkhard Steuernagel Jonathan D G Jones Kamil Witek Brande B H Wulff Guotai Yu Ian Small Joanna Melonek Ruonan Zhou Angéla Juhász Tatiana Belova Rudi Appels Odd-Arne Olsen Kostya Kanyuka Robert King Kirby Nilsen Sean Walkowiak Curtis J Pozniak Richard Cuthbert Raju Datla Ron Knox Krysta Wiebe Daoquan Xiang Antje Rohde Timothy Golds Jaroslav Doležel Jana Čížková Josquin Tibbits Hikmet Budak Bala Ani Akpinar Sezgi Biyiklioglu Gary Muehlbauer Jesse Poland Liangliang Gao Juan Gutierrez-Gonzalez Amidou N'Daiye Jaroslav Doležel Hana Šimková Jarmila Číhalíková Marie Kubaláková Jan Šafář Jan Vrána Hélène Berges Arnaud Bellec Sonia Vautrin Michael Alaux Françoise Alfama Anne-Françoise Adam-Blondon Raphael Flores Claire Guerche Thomas Letellier Mikaël Loaec Hadi Quesneville Curtis J Pozniak Andrew G Sharpe Sean Walkowiak Hikmet Budak Janet Condie Jennifer Ens ChuShin Koh Ron Maclachlan Yifang Tan Thomas Wicker Frédéric Choulet Etienne Paux Adriana Alberti Jean-Marc Aury François Balfourier Valérie Barbe Arnaud Couloux Corinne Cruaud Karine Labadie Sophie Mangenot Patrick Wincker Bikram Gill Gaganpreet Kaur Mingcheng Luo Sunish Sehgal Kuldeep Singh Parveen Chhuneja Om Prakash Gupta Suruchi Jindal Parampreet Kaur Palvi Malik Priti Sharma Bharat Yadav Nagendra K Singh JitendraP Khurana Chanderkant Chaudhary Paramjit Khurana Vinod Kumar Ajay Mahato Saloni Mathur Amitha Sevanthi Naveen Sharma Ram Sewak Tomar Jane Rogers John Jacobs Michael Alaux Arnaud Bellec Hélène Berges Jaroslav Doležel Catherine Feuillet Zeev Frenkel Bikram Gill Abraham Korol Edwin van der Vossen Sonia Vautrin Bikram Gill Gaganpreet Kaur Mingcheng Luo Sunish Sehgal Jan Bartoš Kateřina Holušová Ondřej Plíhal Matthew D Clark Darren Heavens George Kettleborough Jon Wright Miroslav Valárik Michael Abrouk Barbora Balcárková Kateřina Holušová Yuqin Hu Mingcheng Luo Elena Salina Nikolai Ravin Konstantin Skryabin Alexey Beletsky Vitaly Kadnikov Andrey Mardanov Michail Nesterov Andrey Rakitin Ekaterina Sergeeva Hirokazu Handa Hiroyuki Kanamori Satoshi Katagiri Fuminori Kobayashi Shuhei Nasuda Tsuyoshi Tanaka Jianzhong Wu Rudi Appels Matthew Hayden Gabriel Keeble-Gagnère Philippe Rigault Josquin Tibbits Odd-Arne Olsen Tatiana Belova Federica Cattonaro Min Jiumeng Karl Kugler Klaus F X Mayer Matthias Pfeifer Simen Sandve Xu Xun Bujie Zhan Hana Šimková Michael Abrouk Jacqueline Batley Philipp E Bayer David Edwards Satomi Hayashi Helena Toegelová Zuzana Tulpová Paul Visendi Song Weining Licao Cui Xianghong Du Kewei Feng Xiaojun Nie Wei Tong Le Wang Philippa Borrill Heidrun Gundlach Sergio Galvez Gemy Kaithakottil Daniel Lang Thomas Lux Martin Mascher Danara Ormanbekova Verena Prade Ricardo H Ramirez-Gonzalez Manuel Spannagl Nils Stein Cristobal Uauy Luca Venturini Nils Stein Rudi Appels Kellye Eversole Jane Rogers Philippa Borrill Luigi Cattivelli Frédéric Choulet Pilar Hernandez Kostya Kanyuka Daniel Lang Martin Mascher Kirby Nilsen Etienne Paux Curtis J Pozniak Ricardo H Ramirez-Gonzalez Hana Šimková Ian Small Manuel Spannagl David Swarbreck Cristobal Uauy

Science 2018 08 16;361(6403). Epub 2018 Aug 16.

John Innes Centre, Crop Genetics, Norwich Research Park, Norwich NR4 7UH, UK.

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http://dx.doi.org/10.1126/science.aar7191DOI Listing
August 2018

Editing of Chloroplast by PPR Editing Factor EMB2261 Is Essential for Development.

Front Plant Sci 2018 20;9:841. Epub 2018 Jun 20.

Australian Research Council Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia, Crawley, WA, Australia.

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http://dx.doi.org/10.3389/fpls.2018.00841DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6019781PMC
June 2018

Complete Chloroplast Genome Sequences of Four Meliaceae Species and Comparative Analyses.

Int J Mol Sci 2018 Mar 1;19(3). Epub 2018 Mar 1.

Thünen Institute of Forest Genetics, Sieker Landstrasse 2, D-22927 Grosshansdorf, Germany.

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http://dx.doi.org/10.3390/ijms19030701DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5877562PMC
March 2018

Protein Complexes Implicated in RNA Editing in Plant Organelles.

Mol Plant 2017 10 25;10(10):1255-1257. Epub 2017 Sep 25.

ARC Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia, Crawley, WA 6009, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.molp.2017.09.011DOI Listing
October 2017

The mitochondrial pentatricopeptide repeat protein PPR19 is involved in the stabilization of NADH dehydrogenase 1 transcripts and is crucial for mitochondrial function and Arabidopsis thaliana development.

New Phytol 2017 Jul 23;215(1):202-216. Epub 2017 Mar 23.

Department of Plant Biotechnology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju, 61186, Korea.

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http://dx.doi.org/10.1111/nph.14528DOI Listing
July 2017

What can we do with 1000 plastid genomes?

Plant J 2017 May 30;90(4):808-818. Epub 2017 Mar 30.

ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia.

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http://dx.doi.org/10.1111/tpj.13491DOI Listing
May 2017

The nuclear and organellar tRNA-derived RNA fragment population in Arabidopsis thaliana is highly dynamic.

Nucleic Acids Res 2017 04;45(6):3460-3472

Institut de biologie moléculaire des plantes, UPR 2357 CNRS, associated with Strasbourg University, 12 rue du Général Zimmer 67084 Strasbourg cedex, France.

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http://dx.doi.org/10.1093/nar/gkw1122DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5389709PMC
April 2017

In Arabidopsis thaliana distinct alleles encoding mitochondrial RNA PROCESSING FACTOR 4 support the generation of additional 5' termini of ccmB transcripts.

Plant Mol Biol 2017 Apr 22;93(6):659-668. Epub 2017 Feb 22.

Institut Molekulare Botanik, Universität Ulm, Albert-Einstein-Allee 11, 89069, Ulm, Germany.

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http://dx.doi.org/10.1007/s11103-017-0591-yDOI Listing
April 2017

In Silico Identification of Candidate Genes for Fertility Restoration in Cytoplasmic Male Sterile Perennial Ryegrass (Lolium perenne L.).

Genome Biol Evol 2017 02;9(2):351-362

Institute of Agricultural Sciences, Forage Crop Genetics, ETH Zurich, Zurich, Switzerland.

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http://dx.doi.org/10.1093/gbe/evw047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5499803PMC
February 2017

The Pentatricopeptide Repeat Protein EMB2654 Is Essential for Trans-Splicing of a Chloroplast Small Ribosomal Subunit Transcript.

Plant Physiol 2017 02 23;173(2):1164-1176. Epub 2016 Dec 23.

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley 6009 Western Australia, Australia (N.A., H.R., L.V.P.S., L.E., J.D.B., K.A.H., I.S., C.C.d.F.-S.); and

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http://dx.doi.org/10.1104/pp.16.01840DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5291019PMC
February 2017

Evolutionary plasticity of restorer-of-fertility-like proteins in rice.

Sci Rep 2016 10 24;6:35152. Epub 2016 Oct 24.

ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, 6009 Crawley, Western Australia.

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http://dx.doi.org/10.1038/srep35152DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5075784PMC
October 2016

Integration of complete chloroplast genome sequences with small amplicon datasets improves phylogenetic resolution in Acacia.

Mol Phylogenet Evol 2016 Mar 15;96:1-8. Epub 2015 Dec 15.

Australian Research Council Centre of Excellence in Plant Energy Biology, The University of Western Australia, Crawley, WA 6009, Australia; School of Chemistry and Biochemistry, The University of Western Australia, Crawley, WA 6009, Australia.

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http://dx.doi.org/10.1016/j.ympev.2015.11.021DOI Listing
March 2016

SOT1, a pentatricopeptide repeat protein with a small MutS-related domain, is required for correct processing of plastid 23S-4.5S rRNA precursors in Arabidopsis thaliana.

Plant J 2016 Mar;85(5):607-21

National Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200032, China.

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http://dx.doi.org/10.1111/tpj.13126DOI Listing
March 2016

The Complete Sequence of the Acacia ligulata Chloroplast Genome Reveals a Highly Divergent clpP1 Gene.

PLoS One 2015 8;10(5):e0125768. Epub 2015 May 8.

Australian Research Council Centre of Excellence in Plant Energy Biology, The University of Western Australia, Crawley, Western Australia, Australia; Centre of Excellence in Computational Systems Biology, The University of Western Australia, Crawley, Western Australia, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0125768PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4425659PMC
February 2016

Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants.

Plant J 2016 Feb;85(4):532-47

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, 6009, Australia.

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http://dx.doi.org/10.1111/tpj.13121DOI Listing
February 2016

Evaluation of the BlightPro Decision Support System for Management of Potato Late Blight Using Computer Simulation and Field Validation.

Phytopathology 2015 Dec 25;105(12):1545-54. Epub 2015 Nov 25.

Department of Plant Pathology and Plant-Microbe Biology, Cornell University, Ithaca, NY 14850.

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http://dx.doi.org/10.1094/PHYTO-05-15-0117-RDOI Listing
December 2015

Metalaxyl Resistance in Phytophthora infestans: Assessing Role of RPA190 Gene and Diversity Within Clonal Lineages.

Phytopathology 2015 Dec 9;105(12):1594-600. Epub 2015 Nov 9.

First and fourth authors: Department of Plant Pathology and Microbiology, University of California, Riverside, CA 92521; and second and third authors: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Ithaca, NY 14853.

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http://dx.doi.org/10.1094/PHYTO-05-15-0129-RDOI Listing
December 2015

PPR-SMRs: ancient proteins with enigmatic functions.

RNA Biol 2013 28;10(9):1501-10. Epub 2013 Aug 28.

Australian Research Council Centre of Excellence in Plant Energy Biology; The University of Western Australia; Crawley, WA Australia.

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http://dx.doi.org/10.4161/rna.26172DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3858433PMC
May 2015

AEF1/MPR25 is implicated in RNA editing of plastid atpF and mitochondrial nad5, and also promotes atpF splicing in Arabidopsis and rice.

Plant J 2015 Mar;81(5):661-9

Australian Research Council Centre of Excellence in Plant Energy Biology, The University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia.

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http://dx.doi.org/10.1111/tpj.12756DOI Listing
March 2015

The solution structure of the pentatricopeptide repeat protein PPR10 upon binding atpH RNA.

Nucleic Acids Res 2015 Feb 21;43(3):1918-26. Epub 2015 Jan 21.

School of Chemistry and Biochemistry, The University of Western Australia, Crawley, Western Australia, Australia

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http://dx.doi.org/10.1093/nar/gkv027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4330388PMC
February 2015

Predictable alteration of sequence recognition by RNA editing factors from Arabidopsis.

Plant Cell 2015 Feb 3;27(2):403-16. Epub 2015 Feb 3.

Australian Research Council Centre of Excellence in Plant Energy Biology, The University of Western Australia, Crawley, WA 6009, Australia

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http://dx.doi.org/10.1105/tpc.114.134189DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4456925PMC
February 2015

The design and structural characterization of a synthetic pentatricopeptide repeat protein.

Acta Crystallogr D Biol Crystallogr 2015 Feb 23;71(Pt 2):196-208. Epub 2015 Jan 23.

School of Chemistry and Biochemistry, The University of Western Australia, Crawley, Western Australia, Australia.

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http://journals.iucr.org/d/issues/2015/02/00/kw5103/kw5103.p
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http://scripts.iucr.org/cgi-bin/paper?S1399004714024869
Publisher Site
http://dx.doi.org/10.1107/S1399004714024869DOI Listing
February 2015

Surveillance and cleavage of eukaryotic tRNAs.

Int J Mol Sci 2015 Jan 15;16(1):1873-93. Epub 2015 Jan 15.

Institut de Biologie Moléculaire des Plantes, CNRS, Associated with University of Strasbourg, 12 rue du Général Zimmer, F-67084 Strasbourg Cedex, France.

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http://dx.doi.org/10.3390/ijms16011873DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4307339PMC
January 2015

SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome.

Bioinformatics 2014 Dec 22;30(23):3356-64. Epub 2014 Aug 22.

Centre of Excellence in Computational Systems Biology, The University of Western Australia, Perth, WA 6009, Australia and ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, Perth, WA 6009, Australia.

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http://dx.doi.org/10.1093/bioinformatics/btu550DOI Listing
December 2014

Quantitative analysis of motifs contributing to the interaction between PLS-subfamily members and their target RNA sequences in plastid RNA editing.

Plant J 2014 Dec 6;80(5):870-82. Epub 2014 Nov 6.

Department of Life Science, Faculty of Science and Engineering, Chuo University, Bunkyo-ku, Tokyo, 112-8551, Japan.

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http://dx.doi.org/10.1111/tpj.12687DOI Listing
December 2014

Small kernel 1 encodes a pentatricopeptide repeat protein required for mitochondrial nad7 transcript editing and seed development in maize (Zea mays) and rice (Oryza sativa).

Plant J 2014 Sep 28;79(5):797-809. Epub 2014 Jul 28.

School of Life Sciences, Tsinghua University, Beijing, 100084, China; Shenzhen Key Laboratory of Super Hybrid Rice Research, Division of Life & Health Sciences, Graduate School at Shenzhen, Tsinghua University, Shenzhen, 518055, China; State Key Lab of Agrobiotechnology, Institute of Plant Molecular Biology and Agrobiotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, N.T, Hong Kong.

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http://dx.doi.org/10.1111/tpj.12584DOI Listing
September 2014

The cytidine deaminase signature HxE(x)n CxxC of DYW1 binds zinc and is necessary for RNA editing of ndhD-1.

New Phytol 2014 Sep 10;203(4):1090-5. Epub 2014 Jul 10.

Unité de Recherche en Génomique Végétale (URGV), UMR INRA/UEVE - ERL CNRS, SPS Labex, CP 5708, 91057, Evry Cedex, France; Australian Research Council Centre of Excellence in Plant Energy Biology, The University of Western Australia, Crawley, WA, 6009, Australia.

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http://dx.doi.org/10.1111/nph.12928DOI Listing
September 2014

The Pentatricopeptide Repeat Proteins TANG2 and ORGANELLE TRANSCRIPT PROCESSING439 Are Involved in the Splicing of the Multipartite nad5 Transcript Encoding a Subunit of Mitochondrial Complex I.

Plant Physiol 2014 Aug 23;165(4):1409-1416. Epub 2014 Jun 23.

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (C.C.d.F.-S., A.F.d.L., E.L., S.K.T., I.S.); andDepartment of Cell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (Y.L., C.S., M.W.B.).

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http://www.plantphysiol.org/cgi/doi/10.1104/pp.114.244616
Publisher Site
http://dx.doi.org/10.1104/pp.114.244616DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4119027PMC
August 2014

Using the SUBcellular database for Arabidopsis proteins to localize the Deg protease family.

Front Plant Sci 2014 12;5:396. Epub 2014 Aug 12.

The Australian Research Council Centre of Excellence in Plant Energy Biology, The University of Western Australia Perth, WA, Australia ; Centre of Excellence in Computational Systems Biology, The University of Western Australia Perth, WA, Australia ; Centre for Comparative Analysis on Biomolecular Networks, The University of Western Australia Perth, WA, Australia.

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http://dx.doi.org/10.3389/fpls.2014.00396DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4130198PMC
August 2014

Pentatricopeptide repeat proteins in plants.

Annu Rev Plant Biol 2014 27;65:415-42. Epub 2014 Jan 27.

Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97405; email:

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http://dx.doi.org/10.1146/annurev-arplant-050213-040159DOI Listing
July 2014

The potential for manipulating RNA with pentatricopeptide repeat proteins.

Plant J 2014 Jun 29;78(5):772-82. Epub 2014 Jan 29.

Faculty of Agriculture, Kyushu University, Fukuoka, 812-8581, Japan.

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http://dx.doi.org/10.1111/tpj.12377DOI Listing
June 2014

Emerging tools for synthetic biology in plants.

Plant J 2014 Jun 23;78(5):725-6. Epub 2014 May 23.

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, 6009, WA, Australia.

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http://dx.doi.org/10.1111/tpj.12462DOI Listing
June 2014

Surrogate mutants for studying mitochondrially encoded functions.

Biochimie 2014 May 29;100:234-42. Epub 2013 Aug 29.

Australian Research Council (ARC) Centre of Excellence in Plant Energy Biology, University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.biochi.2013.08.019DOI Listing
May 2014

nMAT4, a maturase factor required for nad1 pre-mRNA processing and maturation, is essential for holocomplex I biogenesis in Arabidopsis mitochondria.

Plant J 2014 Apr 26;78(2):253-68. Epub 2014 Mar 26.

Department of Plant and Environmental Sciences, The Alexander Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, Givat-Ram, Jerusalem, 91904, Israel.

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April 2014

A DYW-protein knockout in Physcomitrella affects two closely spaced mitochondrial editing sites and causes a severe developmental phenotype.

Plant J 2013 Nov 10;76(3):420-32. Epub 2013 Sep 10.

Institut für Zelluläre und Molekulare Botanik (IZMB), Abteilung Molekulare Evolution, Universität Bonn, Kirschallee 1, 53115, Bonn, Germany; Faculty of Biology, Department of Cell Biology, University of Marburg, Karl-von-Frisch-Str. 8, 35043, Marburg, Germany; Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, WA, 6009, Australia.

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http://dx.doi.org/10.1111/tpj.12304DOI Listing
November 2013

Organelle transcriptomes: products of a deconstructed genome.

Curr Opin Microbiol 2013 Oct 7;16(5):652-8. Epub 2013 Aug 7.

Australian Research Council Centre of Excellence in Plant Energy Biology, The University of Western Australia, Western Australia 6009, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.mib.2013.07.011DOI Listing
October 2013

Is agriculture driving the diversification of the Bemisia tabaci species complex (Hemiptera: Sternorrhyncha: Aleyrodidae)?: Dating, diversification and biogeographic evidence revealed.

BMC Evol Biol 2013 Oct 18;13:228. Epub 2013 Oct 18.

ARC Centre of Excellence in Plant Energy Biology, M315, The University of Western Australia, 35 Stirling Highway, Crawley, Western Australia 6009, Australia.

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http://dx.doi.org/10.1186/1471-2148-13-228DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3853546PMC
October 2013

mCSF1, a nucleus-encoded CRM protein required for the processing of many mitochondrial introns, is involved in the biogenesis of respiratory complexes I and IV in Arabidopsis.

New Phytol 2013 Jul 7;199(2):379-94. Epub 2013 May 7.

Institute of Plant Sciences, Agricultural Research Organization (ARO), Volcani Center, Bet Dagan, 50250, Israel.

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http://dx.doi.org/10.1111/nph.12282DOI Listing
July 2013

The E domains of pentatricopeptide repeat proteins from different organelles are not functionally equivalent for RNA editing.

Plant J 2013 Jun 25;74(6):935-45. Epub 2013 Apr 25.

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, WA 6009, Australia.

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http://dx.doi.org/10.1111/tpj.12180DOI Listing
June 2013

Fluorescent protein tagging as a tool to define the subcellular distribution of proteins in plants.

Front Plant Sci 2013 24;4:214. Epub 2013 Jun 24.

ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia Perth, WA, Australia.

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http://dx.doi.org/10.3389/fpls.2013.00214DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3690342PMC
June 2013

Mitochondrial genomes as living 'fossils'.

Authors:
Ian Small

BMC Biol 2013 Apr 15;11:30. Epub 2013 Apr 15.

Australian Research Council Centre of Excellence in Plant Energy Biology, Bayliss Building, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia.

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http://dx.doi.org/10.1186/1741-7007-11-30DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3626725PMC
April 2013

A reevaluation of dual-targeting of proteins to mitochondria and chloroplasts.

Biochim Biophys Acta 2013 Feb 7;1833(2):253-9. Epub 2012 Jun 7.

Australian Research Council Centre of Excellence in Plant Energy Biology, The University of Western Australia, Crawley 6009, Australia.

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http://dx.doi.org/10.1016/j.bbamcr.2012.05.029DOI Listing
February 2013

SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis.

Nucleic Acids Res 2013 Jan 24;41(Database issue):D1185-91. Epub 2012 Nov 24.

Centre of Excellence in Computational Systems Biology, The University of Western Australia, Perth, WA 6009, Australia.

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http://dx.doi.org/10.1093/nar/gks1151DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531127PMC
January 2013

A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins.

PLoS Genet 2012 16;8(8):e1002910. Epub 2012 Aug 16.

Institute of Molecular Biology, University of Oregon, Eugene, Oregon, United States of America.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3420917PMC
December 2012

MRPS27 is a pentatricopeptide repeat domain protein required for the translation of mitochondrially encoded proteins.

FEBS Lett 2012 Oct 25;586(20):3555-61. Epub 2012 Jul 25.

Western Australian Institute for Medical Research and Centre for Medical Research, The University of Western Australia, Perth, Western Australia 6000, Australia.

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http://doi.wiley.com/10.1016/j.febslet.2012.07.043
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October 2012

An exploratory study of primary care pharmacist-led epilepsy consultations.

Int J Pharm Pract 2012 Oct 18;20(5):294-302. Epub 2012 May 18.

Broadland Clinic Forensic Service, Willowbank, Little Plumstead Hospital, Little Plumstead, UK.

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http://dx.doi.org/10.1111/j.2042-7174.2012.00207.xDOI Listing
October 2012

Two interacting proteins are necessary for the editing of the NdhD-1 site in Arabidopsis plastids.

Plant Cell 2012 Sep 21;24(9):3684-94. Epub 2012 Sep 21.

Unité de Recherche en Génomique Végétale, Unité Mixte de Recherche, Institut National de la Recherche Agronomique/Université Evry Val d'Essone/Equipe de Recherche Labellisée, Centre National de la Recherche Scientifique 91057, 91057 Evry cedex, France.

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http://dx.doi.org/10.1105/tpc.112.099507DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3480295PMC
September 2012

nMAT1, a nuclear-encoded maturase involved in the trans-splicing of nad1 intron 1, is essential for mitochondrial complex I assembly and function.

Plant J 2012 Aug 22;71(3):413-26. Epub 2012 May 22.

Institute of Plant Sciences, Agricultural Research Organizaion, Volcani Center, Bet Dagan 50250, Israel.

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http://dx.doi.org/10.1111/j.1365-313X.2012.04998.xDOI Listing
August 2012

Nucleotide and RNA metabolism prime translational initiation in the earliest events of mitochondrial biogenesis during Arabidopsis germination.

Plant Physiol 2012 Apr 16;158(4):1610-27. Epub 2012 Feb 16.

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley 6009, Western Australia, Australia.

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http://dx.doi.org/10.1104/pp.111.192351DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3320173PMC
April 2012

Organellar RNA editing.

Wiley Interdiscip Rev RNA 2011 Jul-Aug;2(4):493-506. Epub 2011 Jan 28.

UR1268 Biopolymères, Interactions, Assemblages, INRA, Nantes, France.

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March 2012

The SCO2 protein disulphide isomerase is required for thylakoid biogenesis and interacts with LHCB1 chlorophyll a/b binding proteins which affects chlorophyll biosynthesis in Arabidopsis seedlings.

Plant J 2012 Mar 2;69(5):743-54. Epub 2011 Dec 2.

ARC Centre of Excellence in Plant Energy Biology, University of Western Australia, 35 Stirling Highway, Crawley, Western Australia, Australia.

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http://dx.doi.org/10.1111/j.1365-313X.2011.04833.xDOI Listing
March 2012

A PORR domain protein required for rpl2 and ccmF(C) intron splicing and for the biogenesis of c-type cytochromes in Arabidopsis mitochondria.

Plant J 2012 Mar 28;69(6):996-1005. Epub 2011 Dec 28.

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley 6009 WA, Australia.

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http://dx.doi.org/10.1111/j.1365-313X.2011.04849.xDOI Listing
March 2012

Arabidopsis CSP41 proteins form multimeric complexes that bind and stabilize distinct plastid transcripts.

J Exp Bot 2012 Feb 16;63(3):1251-70. Epub 2011 Nov 16.

Lehrstuhl für Molekularbiologie der Pflanzen (Botanik), Department Biologie I, Ludwig-Maximilians-Universität München, D-82152 Planegg-Martinsried, Germany.

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http://dx.doi.org/10.1093/jxb/err347DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3276088PMC
February 2012

In silico methods for identifying organellar and suborganellar targeting peptides in Arabidopsis chloroplast proteins and for predicting the topology of membrane proteins.

Methods Mol Biol 2011 ;774:243-80

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, WA, Australia.

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http://dx.doi.org/10.1007/978-1-61779-234-2_16DOI Listing
November 2011

Rampant gene loss in the underground orchid Rhizanthella gardneri highlights evolutionary constraints on plastid genomes.

Mol Biol Evol 2011 Jul 2;28(7):2077-86. Epub 2011 Feb 2.

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Perth, Australia.

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http://dx.doi.org/10.1093/molbev/msr028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3112369PMC
July 2011

The evolution of RNA editing and pentatricopeptide repeat genes.

New Phytol 2011 Jul 9;191(1):37-47. Epub 2011 May 9.

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley 6009, WA, Australia.

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http://dx.doi.org/10.1111/j.1469-8137.2011.03746.xDOI Listing
July 2011

The pentatricopeptide repeat protein OTP87 is essential for RNA editing of nad7 and atp1 transcripts in Arabidopsis mitochondria.

J Biol Chem 2011 Jun 19;286(24):21361-71. Epub 2011 Apr 19.

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley 6009 Western Australia, Australia.

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http://www.jbc.org/cgi/doi/10.1074/jbc.M111.230516
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http://dx.doi.org/10.1074/jbc.M111.230516DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3122196PMC
June 2011

A PPR protein involved in regulating nuclear genes encoding mitochondrial proteins?

Plant Signal Behav 2011 May 1;6(5):748-50. Epub 2011 May 1.

Institut de Biologie Moléculaire des Plantes du CNRS, University of Strasbourg, Strasbourg, Alsace, France.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3172855PMC
http://dx.doi.org/10.4161/psb.6.5.15148DOI Listing
May 2011

What have we learned? A review of the literature on children's health and the environment in the Aral Sea area.

Int J Public Health 2011 Apr 26;56(2):125-38. Epub 2010 Oct 26.

Health and Environment Analysis Laboratory, Department of Geography, University of Ottawa, Ottawa, ON, K1N 6N5, Canada.

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http://dx.doi.org/10.1007/s00038-010-0201-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3066395PMC
April 2011

Albinism does not correlate with biparental inheritance of plastid DNA in interspecific hybrids in Cicer species.

Plant Sci 2011 Apr 19;180(4):628-33. Epub 2011 Jan 19.

Centre for Legumes in Mediterranean Agriculture, Faculty of Natural and Agricultural Sciences, The University of Western Australia, Crawley, WA 6009, Australia.

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http://dx.doi.org/10.1016/j.plantsci.2011.01.003DOI Listing
April 2011

OTP70 is a pentatricopeptide repeat protein of the E subgroup involved in splicing of the plastid transcript rpoC1.

Plant J 2011 Feb 4;65(4):532-42. Epub 2011 Jan 4.

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley 6009 WA, Australia.

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http://dx.doi.org/10.1111/j.1365-313X.2010.04441.xDOI Listing
February 2011

An Arabidopsis dual-localized pentatricopeptide repeat protein interacts with nuclear proteins involved in gene expression regulation.

Plant Cell 2011 Feb 4;23(2):730-40. Epub 2011 Feb 4.

Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique, Université de Strasbourg, 67084 Strasbourg Cedex, France.

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http://dx.doi.org/10.1105/tpc.110.081638DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3077779PMC
February 2011

Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution.

Proc Natl Acad Sci U S A 2011 Jan 10;108(4):1723-8. Epub 2011 Jan 10.

Australian Research Council Centre of Excellence in Plant Energy Biology and School of Biomedical, Biomolecular, and Chemical Sciences, University of Western Australia, Crawley, WA 6009, Australia.

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http://dx.doi.org/10.1073/pnas.1007667108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3029733PMC
January 2011

The cytoskeleton and the peroxisomal-targeted snowy cotyledon3 protein are required for chloroplast development in Arabidopsis.

Plant Cell 2010 Oct 26;22(10):3423-38. Epub 2010 Oct 26.

ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University Canberra, Acton, Australian Capital Territory, Australia.

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http://www.plantcell.org/lookup/doi/10.1105/tpc.110.074781
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2990128PMC
October 2010

Plant RNA editing.

RNA Biol 2010 Mar-Apr;7(2):213-9. Epub 2010 Mar 26.

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, WA, Australia.

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http://dx.doi.org/10.4161/rna.7.2.11343DOI Listing
September 2010

Nuclearly encoded splicing factors implicated in RNA splicing in higher plant organelles.

Mol Plant 2010 Jul 5;3(4):691-705. Epub 2010 Jul 5.

Unité Mixte de Recherche en Génomique Végétale (Institut National de la Recherche Agronomique/Centre National de la Recherche Scientifique/Université d'Evry Val d'Essonne), 91057 Evry, France.

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http://dx.doi.org/10.1093/mp/ssq025DOI Listing
July 2010

The pentatricopeptide repeat protein OTP82 is required for RNA editing of plastid ndhB and ndhG transcripts.

Plant J 2010 Jan 20;61(2):339-49. Epub 2009 Oct 20.

Department of Botany, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.1111/j.1365-313X.2009.04059.xDOI Listing
January 2010

A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.

Plant Cell 2009 Nov 24;21(11):3686-99. Epub 2009 Nov 24.

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, WA 6009, Crawley, Australia.

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http://dx.doi.org/10.1105/tpc.109.071472DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2798323PMC
November 2009

Remodeled respiration in ndufs4 with low phosphorylation efficiency suppresses Arabidopsis germination and growth and alters control of metabolism at night.

Plant Physiol 2009 Oct 12;151(2):603-19. Epub 2009 Aug 12.

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia.

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http://dx.doi.org/10.1104/pp.109.141770DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2754622PMC
October 2009

Phage-type RNA polymerase RPOTmp performs gene-specific transcription in mitochondria of Arabidopsis thaliana.

Plant Cell 2009 Sep 25;21(9):2762-79. Epub 2009 Sep 25.

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, WA, Australia.

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http://www.plantcell.org/cgi/doi/10.1105/tpc.109.068536
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http://dx.doi.org/10.1105/tpc.109.068536DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2768943PMC
September 2009

The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth.

Plant J 2009 Apr 29;58(1):82-96. Epub 2008 Dec 29.

National Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 200032 Shanghai, China.

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http://doi.wiley.com/10.1111/j.1365-313X.2008.03766.x
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April 2009

Approaches to defining dual-targeted proteins in Arabidopsis.

Plant J 2009 Mar 11;57(6):1128-39. Epub 2008 Dec 11.

ARC Centre of Excellence in Plant Energy Biology, University of Western Australia, 35 Stirling Highway, Crawley 6009, WA, Australia.

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http://dx.doi.org/10.1111/j.1365-313X.2008.03745.xDOI Listing
March 2009

Pentatricopeptide repeat proteins: a socket set for organelle gene expression.

Trends Plant Sci 2008 Dec 12;13(12):663-70. Epub 2008 Nov 12.

Institute of Biology, Humboldt University of Berlin, Chausseestr. 117, 10115 Berlin, Germany.

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http://dx.doi.org/10.1016/j.tplants.2008.10.001DOI Listing
December 2008

Plastid signalling to the nucleus and beyond.

Trends Plant Sci 2008 Nov 1;13(11):602-9. Epub 2008 Oct 1.

Australian Research Council Centre of Excellence in Plant Energy Biology, School of Biochemistry and Molecular Biology, The Australian National University, Canberra, ACT, Australia.

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http://dx.doi.org/10.1016/j.tplants.2008.08.008DOI Listing
November 2008