Hugues Sicotte

Hugues Sicotte

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Hugues Sicotte

Hugues Sicotte

Publications by authors named "Hugues Sicotte"

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Early genetic aberrations in patients with sporadic colorectal cancer.

Mol Carcinog 2018 Jan 18;57(1):114-124. Epub 2017 Oct 18.

Division of Internal Medicine, Department of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.

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http://dx.doi.org/10.1002/mc.22738DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5716916PMC
January 2018

Identification of unique venous thromboembolism-susceptibility variants in African-Americans.

Thromb Haemost 2017 04 16;117(4):758-768. Epub 2017 Feb 16.

John A. Heit, MD, Stabile 6-Hematology Research, Mayo Clinic, 200 First Street, SW, Rochester, MN 55905, USA, Tel.: +1 507 284 4634, Fax: +1 507 266 9302, E-mail:

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http://dx.doi.org/10.1160/TH16-08-0652DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5831339PMC
April 2017

Radiogenomics to characterize regional genetic heterogeneity in glioblastoma.

Neuro Oncol 2017 01 8;19(1):128-137. Epub 2016 Aug 8.

Department of Radiology, Mayo Clinic, Phoenix, Arizona (L.S.H., T.W., J.M.H.); Department of Biostatistics, Mayo Clinic, Phoenix, Arizona (A.C.D.); Department of Research, Mayo Clinic, Arizona (J.R.M., K.S.); Department of Neurosurgery, Mayo Clinic, Phoenix, Arizona (K.R.S.); Department of Cancer and Cell Biology, Mayo Clinic, Scottsdale, Arizona (J.C.L.); Department of Pathology, Mayo Clinic, Rochester, Minnesota (R.B.J., T.M.K.); Department of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, Minnesota (H.S.); Department of Neuro-oncology, Mayo Clinic, Rochester, Minnesota (B.P.O.); Department of Radiation Oncology, Mayo Clinic, Rochester, Minnesota (J.S.); Department of Pharmaceutics, University of Minnesota, Minneapolis, Minnesota (W.E.); Department of Cancer and Cell Biology, Translational Genomics Research Institute, Phoenix, Arizona (S.P., N.L.T.); School of Computing, Informatics and Decision Systems Engineering, Arizona State University, Tempe, Arizona (J.L., T.W., S.N., N.G.); Department of Biomedical Informatics, Arizona State University, Tempe, Arizona (S.R.); School of Biological and Health Systems Engineering, Arizona State University, Tempe, Arizona (J.P., D.F.); Department of Pathology, Barrow Neurological Institute - St. Joseph's Hospital and Medical Center, Phoenix, Arizona (J.M.E.); Department of Neurosurgery, Barrow Neurological Institute - St. Joseph's Hospital and Medical Center, Phoenix, Arizona (K.A.S., P.N.); Department of Radiology, Barrow Neurological Institute - St. Joseph's Hospital and Medical Center, Phoenix, Arizona (L.C.B., J.P. K., L.S.H.); Department of Imaging Research, Barrow Neurological Institute - St. Joseph's Hospital and Medical Center, Phoenix, Arizona (C.C.Q.).

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http://dx.doi.org/10.1093/neuonc/now135DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5193022PMC
January 2017

Measure transcript integrity using RNA-seq data.

BMC Bioinformatics 2016 Feb 3;17:58. Epub 2016 Feb 3.

Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN, 55905, USA.

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http://dx.doi.org/10.1186/s12859-016-0922-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4739097PMC
February 2016

Zinc transporter genes and urological cancers: integrated analysis suggests a role for ZIP11 in bladder cancer.

Tumour Biol 2015 Sep 23;36(10):7431-7. Epub 2015 Apr 23.

Department of Health Sciences Research, Mayo Clinic, 200 1st St SW, Rochester, MN, 55905, USA.

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http://dx.doi.org/10.1007/s13277-015-3459-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4607554PMC
September 2015

Glioma Groups Based on 1p/19q, IDH, and TERT Promoter Mutations in Tumors.

N Engl J Med 2015 Jun 10;372(26):2499-508. Epub 2015 Jun 10.

From the Departments of Health Sciences Research (J.E.E.-P., P.A.D., H.S., M.L.K.), Laboratory Medicine and Pathology (D.H.L., G.S., A.A.C., T.M.K., C.E.P., A.R.C., C.H., C.G., R.B.J.), Neurology (D.H.L., B.P.O.), and Oncology (J.C.B.), Mayo Clinic, Rochester, MN; the Departments of Neurological Surgery (A.M.M., K.M.W., T.R., I.V.S., H.M.H., L.S.M., S.Z., A.P., M.S.B., S.M.C., M.D.P., J.K.W., M.R.W.), Epidemiology and Biostatistics (A.M.M., P.M.B., J.W., J.K.W., M.R.W.) and Pathology (M.P., R.M., G.F.R., A.P., T.T.) and the Institute of Human Genetics (J.W., J.K.W., M.R.W.), University of California, San Francisco, and the Bioinformatics Core, Gladstone Institutes (A.R.P.) - all in San Francisco; and the Department of Pathology and Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York (J.T.H.).

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http://www.nejm.org/doi/10.1056/NEJMoa1407279
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http://dx.doi.org/10.1056/NEJMoa1407279DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489704PMC
June 2015

Case-only exome sequencing and complex disease susceptibility gene discovery: study design considerations.

J Med Genet 2015 Jan 4;52(1):10-6. Epub 2014 Nov 4.

Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, USA.

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http://dx.doi.org/10.1136/jmedgenet-2014-102697DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4503357PMC
January 2015

PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data.

Bioinformatics 2014 Sep 29;30(18):2678-80. Epub 2014 May 29.

Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Division of Epidemiology, Department of Health Sciences Research, Division of Hematology, Department of Internal Medicine, Mayo Clinic, 200 First Street SW, Rochester, MN 55905 and Department of Health Sciences Research, Mayo Clinic, 4500 San Pablo Road South, Jacksonville, FL 32224, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu363DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4155258PMC
September 2014

Genome-wide association study identifies 25 known breast cancer susceptibility loci as risk factors for triple-negative breast cancer.

Authors:
Kristen S Purrington Susan Slager Diana Eccles Drakoulis Yannoukakos Peter A Fasching Penelope Miron Jane Carpenter Jenny Chang-Claude Nicholas G Martin Grant W Montgomery Vessela Kristensen Hoda Anton-Culver Paul Goodfellow William J Tapper Sajjad Rafiq Susan M Gerty Lorraine Durcan Irene Konstantopoulou Florentia Fostira Athanassios Vratimos Paraskevi Apostolou Irene Konstanta Vassiliki Kotoula Sotiris Lakis Meletios A Dimopoulos Dimosthenis Skarlos Dimitrios Pectasides George Fountzilas Matthias W Beckmann Alexander Hein Matthias Ruebner Arif B Ekici Arndt Hartmann Ruediger Schulz-Wendtland Stefan P Renner Wolfgang Janni Brigitte Rack Christoph Scholz Julia Neugebauer Ulrich Andergassen Michael P Lux Lothar Haeberle Christine Clarke Nirmala Pathmanathan Anja Rudolph Dieter Flesch-Janys Stefan Nickels Janet E Olson James N Ingle Curtis Olswold Seth Slettedahl Jeanette E Eckel-Passow S Keith Anderson Daniel W Visscher Victoria L Cafourek Hugues Sicotte Naresh Prodduturi Elisabete Weiderpass Leslie Bernstein Argyrios Ziogas Jennifer Ivanovich Graham G Giles Laura Baglietto Melissa Southey Veli-Matti Kosma Hans-Peter Fischer Malcom W R Reed Simon S Cross Sandra Deming-Halverson Martha Shrubsole Qiuyin Cai Xiao-Ou Shu Mary Daly Joellen Weaver Eric Ross Jennifer Klemp Priyanka Sharma Diana Torres Thomas Rüdiger Heidrun Wölfing Hans-Ulrich Ulmer Asta Försti Thaer Khoury Shicha Kumar Robert Pilarski Charles L Shapiro Dario Greco Päivi Heikkilä Kristiina Aittomäki Carl Blomqvist Astrid Irwanto Jianjun Liu Vernon Shane Pankratz Xianshu Wang Gianluca Severi Arto Mannermaa Douglas Easton Per Hall Hiltrud Brauch Angela Cox Wei Zheng Andrew K Godwin Ute Hamann Christine Ambrosone Amanda Ewart Toland Heli Nevanlinna Celine M Vachon Fergus J Couch

Carcinogenesis 2014 May 9;35(5):1012-9. Epub 2013 Dec 9.

Department of Health Sciences Research, Mayo Clinic, Rochester, MN 55905, USA.

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http://dx.doi.org/10.1093/carcin/bgt404DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4004200PMC
May 2014

APOBEC3B upregulation and genomic mutation patterns in serous ovarian carcinoma.

Cancer Res 2013 Dec 23;73(24):7222-31. Epub 2013 Oct 23.

Authors' Affiliations: Biochemistry, Molecular Biology and Biophysics Department; Masonic Cancer Center, University of Minnesota, Minneapolis; Division of Biomedical Statistics and Informatics, Department of Health Sciences Research; Medical Genome Facility and Department of Laboratory Medicine and Pathology; Department of Laboratory Medicine and Pathology; Division of Medical Oncology, Department of Oncology; Division of Epidemiology, Department of Health Sciences Research; Division of Oncology Research, Department of Oncology; Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic; Women's Cancer Program, Mayo Clinic Cancer Center, Rochester, Minnesota; Department of Cancer Biology, University of Kansas, Kansas City, Kansas; Department of Obstetrics & Gynecology, University of Washington School of Medicine, Seattle, Washington; and Illumina Cambridge Ltd, Chesterford Research Park, Little Chesterford, Cambridge, United Kingdom.

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http://dx.doi.org/10.1158/0008-5472.CAN-13-1753DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3867573PMC
December 2013

SNPPicker: high quality tag SNP selection across multiple populations.

BMC Bioinformatics 2011 May 2;12:129. Epub 2011 May 2.

Department of Biomedical Statistics and Informatics, Mayo Clinic, 200 1st street SW, Rochester, MN 55905, USA.

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http://dx.doi.org/10.1186/1471-2105-12-129DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3096984PMC
May 2011

A new validity measure for a correlation-based fuzzy c-means clustering algorithm.

Conf Proc IEEE Eng Med Biol Soc 2009 ;2009:3865-8

Computer Science Department, Winona State University, MN 55987, USA.

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http://ieeexplore.ieee.org/document/5332582/
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http://dx.doi.org/10.1109/IEMBS.2009.5332582DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2818127PMC
April 2010

GLOSSI: a method to assess the association of genetic loci-sets with complex diseases.

BMC Bioinformatics 2009 Apr 3;10:102. Epub 2009 Apr 3.

Department of Health Sciences Research, Mayo Clinic College of Medicine, Rochester, NY, USA.

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http://dx.doi.org/10.1186/1471-2105-10-102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2678095PMC
April 2009

Robust and efficient identification of biomarkers by classifying features on graphs.

Bioinformatics 2008 Sep 24;24(18):2023-9. Epub 2008 Jul 24.

Department of Computer Science and Engineering, University of Minnesota, Twin Cities, Bioinformatics Core, Mayo Clinic College of Medicine, Rochester, MN, USA.

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http://dx.doi.org/10.1093/bioinformatics/btn383DOI Listing
September 2008