Huanming Yang

Huanming Yang

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Huanming Yang

Publications by authors named "Huanming Yang"

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A Rare Deep-Rooting D0 African Y-Chromosomal Haplogroup and Its Implications for the Expansion of Modern Humans Out of Africa.

Genetics 2019 Aug 13;212(4):1421-1428. Epub 2019 Jun 13.

The Wellcome Sanger Institute, Hinxton, Cambridgeshire CB10 1SA, UK

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http://dx.doi.org/10.1534/genetics.119.302368DOI Listing
August 2019

Circulating tumor DNA detection is correlated to histologic types in patients with early-stage non-small-cell lung cancer.

Lung Cancer 2019 Aug 31;134:108-116. Epub 2019 May 31.

Department of Anesthesiology, Tianjin Medical University Cancer Institute and Hospital, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin, China. Electronic address:

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http://dx.doi.org/10.1016/j.lungcan.2019.05.034DOI Listing
August 2019

pClean: An Algorithm To Preprocess High-Resolution Tandem Mass Spectra for Database Searching.

J Proteome Res 2019 Aug 14. Epub 2019 Aug 14.

CAS Key Laboratory of Genome Sciences and Information , Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China.

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http://dx.doi.org/10.1021/acs.jproteome.9b00141DOI Listing
August 2019

Integrated bioinformatics analysis to identify 15 hub genes in breast cancer.

Oncol Lett 2019 Aug 30;18(2):1023-1034. Epub 2019 May 30.

BGI-Shenzhen, Shenzhen, Guangdong 518083, P.R. China.

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http://dx.doi.org/10.3892/ol.2019.10411DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6607081PMC
August 2019

A single bacterium restores the microbiome dysbiosis to protect bones from destruction in a rat model of rheumatoid arthritis.

Microbiome 2019 Jul 17;7(1):107. Epub 2019 Jul 17.

State Key Laboratory of Quality Research in Chinese Medicine/Macau Institute for Applied Research in Medicine and Health, Macao University of Science and Technology, Macao, China.

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http://dx.doi.org/10.1186/s40168-019-0719-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6637628PMC
July 2019

In memory of Prof. C. C. Li.

Protein Cell 2019 Jun;10(6):389-392

BGI-Shenzhen, Shenzhen, 518083, China.

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http://link.springer.com/10.1007/s13238-018-0583-y
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http://dx.doi.org/10.1007/s13238-018-0583-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6538568PMC
June 2019

The landscape and diagnostic potential of T and B cell repertoire in Immunoglobulin A Nephropathy.

J Autoimmun 2019 Feb 29;97:100-107. Epub 2018 Oct 29.

BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, BGI-Shenzhen, Shenzhen 518120, China. Electronic address:

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http://dx.doi.org/10.1016/j.jaut.2018.10.018DOI Listing
February 2019

Genomic sequencing and editing revealed the GRM8 signaling pathway as potential therapeutic targets of squamous cell lung cancer.

Cancer Lett 2019 Feb 27;442:53-67. Epub 2018 Oct 27.

Department of Thoracic Surgery II, Key Laboratory of Carcinogenesis and Translational Research, Ministry of Education/Beijing, Peking University Cancer Hospital and Institute, Beijing, China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S03043835183065
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http://dx.doi.org/10.1016/j.canlet.2018.10.035DOI Listing
February 2019

Genomic analysis of liver cancer unveils novel driver genes and distinct prognostic features.

Theranostics 2018 12;8(6):1740-1751. Epub 2018 Feb 12.

Institute of Digestive Diseases and Department of Medicine & Therapeutics, State Key Laboratory of Digestive Diseases, LKS Institute of Health Sciences, CUHK Shenzhen Research Institute, The Chinese University of Hong Kong, Hong Kong.

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http://dx.doi.org/10.7150/thno.22010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5858179PMC
January 2019

An integrated chromatin accessibility and transcriptome landscape of human pre-implantation embryos.

Nat Commun 2019 01 21;10(1):364. Epub 2019 Jan 21.

Institute of Reproductive and Stem Cell Engineering, School of Basic Medical Science, Central South University, Changsha, 410078, China.

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http://dx.doi.org/10.1038/s41467-018-08244-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6341076PMC
January 2019

Improvement of Peptide Separation for Exploring the Missing Proteins Localized on Membranes.

J Proteome Res 2018 12 26;17(12):4152-4159. Epub 2018 Oct 26.

BGI-Shenzhen , Beishan Industrial Zone 11th building , Yantian District, Shenzhen , Guangdong 518083 , China.

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http://pubs.acs.org/doi/10.1021/acs.jproteome.8b00409
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http://dx.doi.org/10.1021/acs.jproteome.8b00409DOI Listing
December 2018

Copy number variation profile in noninvasive prenatal testing (NIPT) can identify co-existing maternal malignancies: Case reports and a literature review.

Taiwan J Obstet Gynecol 2018 Dec;57(6):871-877

Department of Obstetrics and Gynecology, Taipei Veterans General Hospital, Taipei, Taiwan; Department of Obstetrics and Gynecology, National Yang-Ming University School of Medicine, Taipei, Taiwan; Institute of Clinical Medicine, National Yang-Ming University, Taipei, Taiwan. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10284559183025
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http://dx.doi.org/10.1016/j.tjog.2018.10.032DOI Listing
December 2018

Reagents for Isobaric Labeling Peptides in Quantitative Proteomics.

Anal Chem 2018 11 16;90(21):12366-12371. Epub 2018 Oct 16.

BGI-Shenzhen , Beishan Industrial Zone 11th Building , Yantian District, Shenzhen , Guangdong 518083 , China.

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http://pubs.acs.org/doi/10.1021/acs.analchem.8b00321
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http://dx.doi.org/10.1021/acs.analchem.8b00321DOI Listing
November 2018

MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks.

Gigascience 2018 11 1;7(11). Epub 2018 Nov 1.

School of Biology and Biological Engineering, South China University of Technology, Building B6, 382 Zhonghuan Road East, Guangzhou Higher Education Mega Center, Guangzhou 510006, China.

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http://dx.doi.org/10.1093/gigascience/giy121DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6251982PMC
November 2018

A legacy of the "1% program" - The "Chinese Chapter" of the human genome reference sequence.

J Genet Genomics 2018 11 8;45(11):565-568. Epub 2018 Nov 8.

BGI-Shenzhen, Shenzhen 518083, China. Electronic address:

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http://dx.doi.org/10.1016/j.jgg.2018.10.003DOI Listing
November 2018

Chromosome-level reference genome and alternative splicing atlas of moso bamboo (Phyllostachys edulis).

Gigascience 2018 10 1;7(10). Epub 2018 Oct 1.

State Forestry Administration Key Open Laboratory on the Science and Technology of Bamboo and Rattan, Institute of Gene Science for Bamboo and Rattan Resources, International Center for Bamboo and Rattan, Futongdong Rd, WangJing, Chaoyang District Beijing 100102, China.

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http://dx.doi.org/10.1093/gigascience/giy115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6204424PMC
October 2018

Improved Peptide Retention Time Prediction in Liquid Chromatography through Deep Learning.

Anal Chem 2018 09 29;90(18):10881-10888. Epub 2018 Aug 29.

BGI-Shenzhen , Beishan Industrial Zone 11th Building, Yantian District, Shenzhen , Guangdong 518083 , China.

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http://pubs.acs.org/doi/10.1021/acs.analchem.8b02386
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http://dx.doi.org/10.1021/acs.analchem.8b02386DOI Listing
September 2018

Molecular genetics of tetrahydrobiopterin deficiency in Chinese patients.

J Pediatr Endocrinol Metab 2018 Aug;31(8):911-916

National Center for Birth Defects Monitoring, West China Second University Hospital, Sichuan University, 20, Section 3, Ren Min South Road, Chengdu, Sichuan, P.R. China, Phone: 86-028-85502490, Fax: 86-028-85501386.

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http://dx.doi.org/10.1515/jpem-2018-0037DOI Listing
August 2018

Sex Differences in Genetic Associations With Longevity.

JAMA Netw Open 2018 Aug 24;1(4). Epub 2018 Aug 24.

Center for the Study of Aging and Human Development, Medical School of Duke University, Durham, North Carolina (Zeng, H. Chen); Center for Healthy Aging and Development Studies, National School of Development, Raissun Institute for Advanced Studies, Peking University, Beijing, China (Zeng, Bai); BGI Education Center, University of Chinese Academy of Sciences, Shenzhen, China (Nie);BGI-Shenzhen, Shenzhen, China (Nie, Xiaomin Liu, Ye, Z. Chen, Bolund, Hou, Xiao Liu, Xu, H. Yang); The First Affiliated Hospital, Institute of Translational Medicine, School of Medicine, Zhejiang University, Hangzhou, China (Min, E. Xie); Business School of Xiangtan University, Xiangtan, China (H. Chen); Division of Non-Communicable Disease Control and Community Health, Chinese Center for Disease Control and Prevention, Beijing, China (Yin); National Institute of Environmental Health, Chinese Center for Disease Control and Prevention, Beijing, China (Lv, Shi); Department of Sociology, Peking University, Beijing, China (Lu, Li); School of Life Sciences, Fudan University, Shanghai, China (Ni); Department of Biomedicine, Aarhus University, Aarhus, Denmark (Bolund); Duke Population Research Institute, Duke University, Durham, North Carolina (Land, Yashin, O'Rand); The MOH Key Laboratory of Geriatrics, Beijing Hospital, National Center of Gerontology, Beijing, China (Sun, Z. Yang); School of Life Sciences, Peking University, Beijing, China (Tao, Gu); Boston University, Boston, Massachusetts (Gurinovich, Sebastiani, Perls); University of Bologna, Bologna, Italy (Franceschi); Department of Biostatistics and Bioinformatics, Duke University, Durham, North Carolina (J. Xie); French National Institute on Health and Medical Research and Ecole Pratique des Hautes Etudes, University of Montpellier, Montpellier, France (Robine); Max Planck Institute for Biology of Ageing, Cologne, Germany (Deelen); Department of Molecular Epidemiology, Leiden University Medical Center, Leiden, the Netherlands (Slagboom); Molecular Physiology Institute, Medical Center, Duke University, Durham, North Carolina (Hauser); Department of Neurology, Medical Center, Duke University, Durham, North Carolina (Gottschalk, Lutz); University of Southern Denmark, Odense, Denmark (Tan, Christensen); Human Aging Research Institute and School of Life Science, Nanchang University, Jiangxi, China (Tian); James D. Watson Institute of Genome Sciences, Hangzhou, China (H. Yang); Max Planck Institute for Demographic Research, Rostock, Germany (Vaupel).

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http://jamanetworkopen.jamanetwork.com/article.aspx?doi=10.1
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http://dx.doi.org/10.1001/jamanetworkopen.2018.1670DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6173523PMC
August 2018

Coexisting genomic aberrations associated with lymph node metastasis in breast cancer.

J Clin Invest 2018 Jun 23;128(6):2310-2324. Epub 2018 Apr 23.

Department of Cancer and Inflammation Research, Institute of Molecular Medicine, University of Southern Denmark, Odense, Denmark.

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http://dx.doi.org/10.1172/JCI97449DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5983317PMC
June 2018

Saturated long-chain fatty acid-producing bacteria contribute to enhanced colonic motility in rats.

Microbiome 2018 06 14;6(1):107. Epub 2018 Jun 14.

Chinese Medicine Clinical Study Center, Jockey Club School of Chinese Medicine, Hong Kong Baptist University, Kowloon Tong, Hong Kong SAR, China.

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http://dx.doi.org/10.1186/s40168-018-0492-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6003035PMC
June 2018

The landscape of somatic mutation in sporadic Chinese colorectal cancer.

Oncotarget 2018 Jun 8;9(44):27412-27422. Epub 2018 Jun 8.

Beijing Anzhen Hospital, Capital Medical University, The Key Laboratory of Remodeling-Related Cardiovascular Diseases, Ministry of Education, Beijing Collaborative Innovation Center for Cardiovascular Disorders, Beijing Institute of Heart, Lung and Blood Vessel Disease, Beijing, China.

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http://dx.doi.org/10.18632/oncotarget.25287DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6007951PMC
June 2018

The molecular landscape of synchronous colorectal cancer reveals genetic heterogeneity.

Carcinogenesis 2018 05;39(5):708-718

Department of Gastrointestinal Surgery, Research Institute of Surgery, Daping Hospital, Third Military Medical University, Chongqing, China.

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http://dx.doi.org/10.1093/carcin/bgy040DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5932564PMC
May 2018

A gene catalogue of the Sprague-Dawley rat gut metagenome.

Gigascience 2018 05;7(5)

State Key Laboratory of Quality Research in Chinese Medicine/Macau Institute for Applied Research in Medicine and Health, Macao University of Science and Technology, Macao, China.

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https://academic.oup.com/gigascience/article/doi/10.1093/gig
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http://dx.doi.org/10.1093/gigascience/giy055DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5967468PMC
May 2018

Development and clinical validation of a circulating tumor DNA test for the identification of clinically actionable mutations in nonsmall cell lung cancer.

Genes Chromosomes Cancer 2018 04 30;57(4):211-220. Epub 2018 Jan 30.

State Key Laboratory of Respiratory Diseases, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Disease, Guangzhou, 510120, China.

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http://dx.doi.org/10.1002/gcc.22522DOI Listing
April 2018

Novel Mutations in PLOD2 Cause Rare Bruck Syndrome.

Calcif Tissue Int 2018 03 24;102(3):296-309. Epub 2017 Nov 24.

Department of Endocrinology, Key Laboratory of Endocrinology of Ministry of Health, Peking Union Medical College Hospital, Peking Union Medical College, Chinese Academy of Medical Science, Shuaifuyuan No.1, Dongcheng District, Beijing, 100730, China.

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http://dx.doi.org/10.1007/s00223-017-0360-6DOI Listing
March 2018

Comparison of single cell sequencing data between two whole genome amplification methods on two sequencing platforms.

Sci Rep 2018 Mar 21;8(1):4963. Epub 2018 Mar 21.

Laboratory of Genomics and Molecular Biomedicine, Department of Biology, University of Copenhagen, DK-2100, Copenhagen, Denmark.

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http://dx.doi.org/10.1038/s41598-018-23325-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5862989PMC
March 2018

Characterization of viral RNA splicing using whole-transcriptome datasets from host species.

Sci Rep 2018 02 19;8(1):3273. Epub 2018 Feb 19.

Beijing Advanced Innovation Center for Food Nutrition and Human Health, College of Plant Protection, China Agricultural University, Beijing, 100193, China.

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http://dx.doi.org/10.1038/s41598-018-21190-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5818608PMC
February 2018

Design and chemical synthesis of eukaryotic chromosomes.

Chem Soc Rev 2017 Nov;46(23):7191-7207

Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, P. R. China.

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http://dx.doi.org/10.1039/c7cs00208dDOI Listing
November 2017

Analyses of gut microbiota and plasma bile acids enable stratification of patients for antidiabetic treatment.

Nat Commun 2017 11 27;8(1):1785. Epub 2017 Nov 27.

Shanghai National Research Centre for Endocrine and Metabolic Diseases, State Key Laboratory of Medical Genomics, Shanghai Institute for Endocrine and Metabolic Diseases, Ruijin Hospital, Shanghai Jiaotong University School of Medicine, 200025, Shanghai, China.

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http://dx.doi.org/10.1038/s41467-017-01682-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5702614PMC
November 2017

gene involved in pathogenesis of a Chinese family with Bardet-Biedl syndrome.

Oncotarget 2017 Oct 30;8(49):86718-86725. Epub 2017 Sep 30.

Shenzhen Key Laboratory of Ophthalmology, Shenzhen Eye Hospital, Shenzhen University, Shenzhen, China.

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http://dx.doi.org/10.18632/oncotarget.21415DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5689720PMC
October 2017