Huanming Yang

Huanming Yang

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Huanming Yang

Huanming Yang

Publications by authors named "Huanming Yang"

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Evaluation and minimization of nonspecific tryptic cleavages in proteomic sample preparation.

Rapid Commun Mass Spectrom 2020 May;34(10):e8733

School of Life Science and Technology, ShanghaiTech University, Shanghai, China.

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http://dx.doi.org/10.1002/rcm.8733DOI Listing
May 2020

Comprehensive TCR repertoire analysis of CD4 T-cell subsets in rheumatoid arthritis.

J Autoimmun 2020 May 27;109:102432. Epub 2020 Feb 27.

Department of Rheumatology and Clinical Immunology, Peking Union Medical College Hospital, Clinical Immunology Center, Chinese Academy of Medical Sciences and Peking Union Medical College; The Ministry of Education Key Laboratory, National Clinical Research Center for Dermatologic and Immunologic Diseases, Beijing, 100730, China. Electronic address:

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http://dx.doi.org/10.1016/j.jaut.2020.102432DOI Listing
May 2020

Concurrent hearing and genetic screening in a general newborn population.

Hum Genet 2020 Apr 30;139(4):521-530. Epub 2020 Jan 30.

BGI Genomics, BGI-Shenzhen, BGI Park, No. 21 Hongan 3rd Street, Yantian District, Shenzhen, 518083, China.

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http://dx.doi.org/10.1007/s00439-020-02118-6DOI Listing
April 2020

Exploration of Missing Proteins by a Combination Approach to Enrich the Low-Abundance Hydrophobic Proteins from Four Cancer Cell Lines.

J Proteome Res 2020 01 10;19(1):401-408. Epub 2019 Dec 10.

BGI-Shenzhen , Beishan Industrial Zone, 11th Building, Yantian District , Shenzhen 518083 , Guangdong , China.

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http://dx.doi.org/10.1021/acs.jproteome.9b00590DOI Listing
January 2020

Alternative Strategy To Explore Missing Proteins with Low Molecular Weight.

J Proteome Res 2019 12 8;18(12):4180-4188. Epub 2019 Nov 8.

BGI-Shenzhen , Beishan Industrial Zone 11th building , Yantian District, Shenzhen , Guangdong 518083 , China.

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http://dx.doi.org/10.1021/acs.jproteome.9b00353DOI Listing
December 2019

Genome Sequencing Explores Complexity of Chromosomal Abnormalities in Recurrent Miscarriage.

Am J Hum Genet 2019 12 31;105(6):1102-1111. Epub 2019 Oct 31.

Centre for Reproductive Medicine, Shandong University, Jinan 250021, China; The Key laboratory of Reproductive Endocrinology (Shandong University), Ministry of Education, Jinan 250021, China; National Research Center for Assisted Reproductive Technology and Reproductive Genetics, Jinan 250021, China; Center for Reproductive Medicine, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200135, China; Shanghai Key Laboratory for Assisted Reproduction and Reproductive Genetics, Shanghai 200135, China; Hong Kong Branches of Chinese National Engineering Research Centers - Center for Assisted Reproductive Technology and Reproductive Genetics, Hong Kong, China. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2019.10.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6904795PMC
December 2019

Brain Endothelial Cells Maintain Lactate Homeostasis and Control Adult Hippocampal Neurogenesis.

Cell Stem Cell 2019 Dec 21;25(6):754-767.e9. Epub 2019 Nov 21.

State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2019.09.009DOI Listing
December 2019

pClean: An Algorithm To Preprocess High-Resolution Tandem Mass Spectra for Database Searching.

J Proteome Res 2019 09 14;18(9):3235-3244. Epub 2019 Aug 14.

CAS Key Laboratory of Genome Sciences and Information , Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China.

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http://dx.doi.org/10.1021/acs.jproteome.9b00141DOI Listing
September 2019

Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics.

EBioMedicine 2019 Sep 3;47:373-383. Epub 2019 Sep 3.

BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, Shenzhen 518120, China; School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, China. Electronic address:

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http://dx.doi.org/10.1016/j.ebiom.2019.08.048DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6796533PMC
September 2019

Circulating tumor DNA detection is correlated to histologic types in patients with early-stage non-small-cell lung cancer.

Lung Cancer 2019 08 31;134:108-116. Epub 2019 May 31.

Department of Anesthesiology, Tianjin Medical University Cancer Institute and Hospital, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin, China. Electronic address:

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http://dx.doi.org/10.1016/j.lungcan.2019.05.034DOI Listing
August 2019

Integrated bioinformatics analysis to identify 15 hub genes in breast cancer.

Oncol Lett 2019 Aug 30;18(2):1023-1034. Epub 2019 May 30.

BGI-Shenzhen, Shenzhen, Guangdong 518083, P.R. China.

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http://dx.doi.org/10.3892/ol.2019.10411DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6607081PMC
August 2019

A single bacterium restores the microbiome dysbiosis to protect bones from destruction in a rat model of rheumatoid arthritis.

Microbiome 2019 07 17;7(1):107. Epub 2019 Jul 17.

State Key Laboratory of Quality Research in Chinese Medicine/Macau Institute for Applied Research in Medicine and Health, Macao University of Science and Technology, Macao, China.

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http://dx.doi.org/10.1186/s40168-019-0719-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6637628PMC
July 2019

In memory of Prof. C. C. Li.

Protein Cell 2019 06;10(6):389-392

BGI-Shenzhen, Shenzhen, 518083, China.

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http://link.springer.com/10.1007/s13238-018-0583-y
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http://dx.doi.org/10.1007/s13238-018-0583-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6538568PMC
June 2019

The landscape and diagnostic potential of T and B cell repertoire in Immunoglobulin A Nephropathy.

J Autoimmun 2019 02 29;97:100-107. Epub 2018 Oct 29.

BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, BGI-Shenzhen, Shenzhen 518120, China. Electronic address:

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http://dx.doi.org/10.1016/j.jaut.2018.10.018DOI Listing
February 2019

Genomic sequencing and editing revealed the GRM8 signaling pathway as potential therapeutic targets of squamous cell lung cancer.

Cancer Lett 2019 02 27;442:53-67. Epub 2018 Oct 27.

Department of Thoracic Surgery II, Key Laboratory of Carcinogenesis and Translational Research, Ministry of Education/Beijing, Peking University Cancer Hospital and Institute, Beijing, China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S03043835183065
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http://dx.doi.org/10.1016/j.canlet.2018.10.035DOI Listing
February 2019

An integrated chromatin accessibility and transcriptome landscape of human pre-implantation embryos.

Nat Commun 2019 01 21;10(1):364. Epub 2019 Jan 21.

Institute of Reproductive and Stem Cell Engineering, School of Basic Medical Science, Central South University, Changsha, 410078, China.

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http://dx.doi.org/10.1038/s41467-018-08244-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6341076PMC
January 2019

Improvement of Peptide Separation for Exploring the Missing Proteins Localized on Membranes.

J Proteome Res 2018 12 26;17(12):4152-4159. Epub 2018 Oct 26.

BGI-Shenzhen , Beishan Industrial Zone 11th building , Yantian District, Shenzhen , Guangdong 518083 , China.

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http://pubs.acs.org/doi/10.1021/acs.jproteome.8b00409
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http://dx.doi.org/10.1021/acs.jproteome.8b00409DOI Listing
December 2018

Copy number variation profile in noninvasive prenatal testing (NIPT) can identify co-existing maternal malignancies: Case reports and a literature review.

Taiwan J Obstet Gynecol 2018 Dec;57(6):871-877

Department of Obstetrics and Gynecology, Taipei Veterans General Hospital, Taipei, Taiwan; Department of Obstetrics and Gynecology, National Yang-Ming University School of Medicine, Taipei, Taiwan; Institute of Clinical Medicine, National Yang-Ming University, Taipei, Taiwan. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10284559183025
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http://dx.doi.org/10.1016/j.tjog.2018.10.032DOI Listing
December 2018

Reagents for Isobaric Labeling Peptides in Quantitative Proteomics.

Anal Chem 2018 11 16;90(21):12366-12371. Epub 2018 Oct 16.

BGI-Shenzhen , Beishan Industrial Zone 11th Building , Yantian District, Shenzhen , Guangdong 518083 , China.

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http://pubs.acs.org/doi/10.1021/acs.analchem.8b00321
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http://dx.doi.org/10.1021/acs.analchem.8b00321DOI Listing
November 2018

MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks.

Gigascience 2018 11 1;7(11). Epub 2018 Nov 1.

School of Biology and Biological Engineering, South China University of Technology, Building B6, 382 Zhonghuan Road East, Guangzhou Higher Education Mega Center, Guangzhou 510006, China.

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http://dx.doi.org/10.1093/gigascience/giy121DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6251982PMC
November 2018

A legacy of the "1% program" - The "Chinese Chapter" of the human genome reference sequence.

J Genet Genomics 2018 11 8;45(11):565-568. Epub 2018 Nov 8.

BGI-Shenzhen, Shenzhen 518083, China. Electronic address:

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http://dx.doi.org/10.1016/j.jgg.2018.10.003DOI Listing
November 2018

Chromosome-level reference genome and alternative splicing atlas of moso bamboo (Phyllostachys edulis).

Gigascience 2018 10 1;7(10). Epub 2018 Oct 1.

State Forestry Administration Key Open Laboratory on the Science and Technology of Bamboo and Rattan, Institute of Gene Science for Bamboo and Rattan Resources, International Center for Bamboo and Rattan, Futongdong Rd, WangJing, Chaoyang District Beijing 100102, China.

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http://dx.doi.org/10.1093/gigascience/giy115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6204424PMC
October 2018

Improved Peptide Retention Time Prediction in Liquid Chromatography through Deep Learning.

Anal Chem 2018 09 29;90(18):10881-10888. Epub 2018 Aug 29.

BGI-Shenzhen , Beishan Industrial Zone 11th Building, Yantian District, Shenzhen , Guangdong 518083 , China.

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http://pubs.acs.org/doi/10.1021/acs.analchem.8b02386
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http://dx.doi.org/10.1021/acs.analchem.8b02386DOI Listing
September 2018

Sex Differences in Genetic Associations With Longevity.

JAMA Netw Open 2018 08 24;1(4):e181670. Epub 2018 Aug 24.

Center for the Study of Aging and Human Development, Medical School of Duke University, Durham, North Carolina (Zeng, H. Chen); Center for Healthy Aging and Development Studies, National School of Development, Raissun Institute for Advanced Studies, Peking University, Beijing, China (Zeng, Bai); BGI Education Center, University of Chinese Academy of Sciences, Shenzhen, China (Nie);BGI-Shenzhen, Shenzhen, China (Nie, Xiaomin Liu, Ye, Z. Chen, Bolund, Hou, Xiao Liu, Xu, H. Yang); The First Affiliated Hospital, Institute of Translational Medicine, School of Medicine, Zhejiang University, Hangzhou, China (Min, E. Xie); Business School of Xiangtan University, Xiangtan, China (H. Chen); Division of Non-Communicable Disease Control and Community Health, Chinese Center for Disease Control and Prevention, Beijing, China (Yin); National Institute of Environmental Health, Chinese Center for Disease Control and Prevention, Beijing, China (Lv, Shi); Department of Sociology, Peking University, Beijing, China (Lu, Li); School of Life Sciences, Fudan University, Shanghai, China (Ni); Department of Biomedicine, Aarhus University, Aarhus, Denmark (Bolund); Duke Population Research Institute, Duke University, Durham, North Carolina (Land, Yashin, O'Rand); The MOH Key Laboratory of Geriatrics, Beijing Hospital, National Center of Gerontology, Beijing, China (Sun, Z. Yang); School of Life Sciences, Peking University, Beijing, China (Tao, Gu); Boston University, Boston, Massachusetts (Gurinovich, Sebastiani, Perls); University of Bologna, Bologna, Italy (Franceschi); Department of Biostatistics and Bioinformatics, Duke University, Durham, North Carolina (J. Xie); French National Institute on Health and Medical Research and Ecole Pratique des Hautes Etudes, University of Montpellier, Montpellier, France (Robine); Max Planck Institute for Biology of Ageing, Cologne, Germany (Deelen); Department of Molecular Epidemiology, Leiden University Medical Center, Leiden, the Netherlands (Slagboom); Molecular Physiology Institute, Medical Center, Duke University, Durham, North Carolina (Hauser); Department of Neurology, Medical Center, Duke University, Durham, North Carolina (Gottschalk, Lutz); University of Southern Denmark, Odense, Denmark (Tan, Christensen); Human Aging Research Institute and School of Life Science, Nanchang University, Jiangxi, China (Tian); James D. Watson Institute of Genome Sciences, Hangzhou, China (H. Yang); Max Planck Institute for Demographic Research, Rostock, Germany (Vaupel).

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http://jamanetworkopen.jamanetwork.com/article.aspx?doi=10.1
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http://dx.doi.org/10.1001/jamanetworkopen.2018.1670DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6173523PMC
August 2018