Huajun Zheng

Huajun Zheng

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Huajun Zheng

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The let-7c/HoxB7 axis regulates the cell proliferation, migration and apoptosis in hepatocellular carcinoma.

Anticancer Drugs 2019 Oct 11. Epub 2019 Oct 11.

Department of Gastroenterology, the Second Affiliated Hospital of Zhejiang Chinese Medical University, Hangzhou, Zhejiang, China.

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http://dx.doi.org/10.1097/CAD.0000000000000843DOI Listing
October 2019

Targeted Development of Sustainable Green Catalysts for Oxidation of Alcohols via Tungstate-Decorated Multifunctional Amphiphilic Carbon Quantum Dots.

ACS Appl Mater Interfaces 2019 Sep 26;11(36):33194-33206. Epub 2019 Aug 26.

Department of Applied Chemistry , Zhejiang University of Technology , Hangzhou 310032 , China.

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http://dx.doi.org/10.1021/acsami.9b07961DOI Listing
September 2019

The Diversity of Gut Microbiome is Associated With Favorable Responses to Anti-Programmed Death 1 Immunotherapy in Chinese Patients With NSCLC.

J Thorac Oncol 2019 Aug 23;14(8):1378-1389. Epub 2019 Apr 23.

Department of Shanghai Lung Cancer Center, Shanghai Chest Hospital, Shanghai Jiao Tong University, Shanghai, China. Electronic address:

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http://dx.doi.org/10.1016/j.jtho.2019.04.007DOI Listing
August 2019

An improved genome assembly of the fluke Schistosoma japonicum.

PLoS Negl Trop Dis 2019 Aug 7;13(8):e0007612. Epub 2019 Aug 7.

Department of infectious diseases, Huashan Hospital, State Key Laboratory of Genetic Engineering, Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Ministry of Education Key Laboratory of Contemporary Anthropology, School of Life Sciences, Fudan University, Shanghai, China.

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http://dx.doi.org/10.1371/journal.pntd.0007612DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6685614PMC
August 2019

Comparative genomics analysis of Mycoplasma capricolum subsp. capripneumoniae 87001.

Genomics 2019 May 6. Epub 2019 May 6.

National Contagious Bovine Pleuropneumonia Reference Laboratory, Division of Bacterial Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, CAAS, Harbin 150001, China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S08887543193013
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http://dx.doi.org/10.1016/j.ygeno.2019.04.013DOI Listing
May 2019

Comparative genomics for non-O1/O139 Vibrio cholerae isolates recovered from the Yangtze River Estuary versus V. cholerae representative isolates from serogroup O1.

Mol Genet Genomics 2019 Apr 28;294(2):417-430. Epub 2018 Nov 28.

Key Laboratory of Quality and Safety Risk Assessment for Aquatic Products on Storage and Preservation (Shanghai), China Ministry of Agriculture, College of Food Science and Technology, Shanghai Ocean University, Shanghai, People's Republic of China.

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http://dx.doi.org/10.1007/s00438-018-1514-6DOI Listing
April 2019

Fermentation Products of sp. nov. BD3526 Alleviates the Symptoms of Type 2 Diabetes Mellitus in GK Rats.

Front Microbiol 2018 9;9:3292. Epub 2019 Jan 9.

State Key Laboratory of Dairy Biotechnology, Shanghai Engineering Research Center of Dairy Biotechnology, Dairy Research Institute, Bright Dairy & Food Co., Ltd., Shanghai, China.

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http://dx.doi.org/10.3389/fmicb.2018.03292DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6333654PMC
January 2019

Complete genome sequence of the marine fish pathogen Vibrio anguillarum and genome-wide transposon mutagenesis analysis of genes essential for in vivo infection.

Microbiol Res 2018 Nov 24;216:97-107. Epub 2018 Aug 24.

State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China; Shanghai Engineering Research Center of Maricultured Animal Vaccines, Shanghai, China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S09445013183088
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http://dx.doi.org/10.1016/j.micres.2018.08.011DOI Listing
November 2018

Infection Results in an Increase in and Genera in the Gut of Mice.

Front Microbiol 2018 29;9:2890. Epub 2018 Nov 29.

Molecular Parasitology Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, QLD, Australia.

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http://dx.doi.org/10.3389/fmicb.2018.02890DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6281689PMC
November 2018

Bacterial Communities in the Womb During Healthy Pregnancy.

Front Microbiol 2018 6;9:2163. Epub 2018 Sep 6.

Department of Microbiology and Immunology, Institutes of Medical Sciences, Shanghai Jiao Tong University School of Medicine, Shanghai, China.

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http://dx.doi.org/10.3389/fmicb.2018.02163DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6135892PMC
September 2018

Creating a functional single-chromosome yeast.

Nature 2018 08 1;560(7718):331-335. Epub 2018 Aug 1.

Key Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China.

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http://dx.doi.org/10.1038/s41586-018-0382-xDOI Listing
August 2018

Stability and anti-tumor effect of oncolytic herpes simplex virus type 2.

Oncotarget 2018 May 15;9(37):24672-24683. Epub 2018 May 15.

National "111" Center for Cellular Regulation and Molecular Pharmaceutics, Key Laboratory of Fermentation Engineering (Ministry of Education), Hubei Provincial Cooperative Innovation Center of Industrial Fermentation, Hubei Key Laboratory of Industrial Microbiology, Hubei University of Technology, Wuhan, 430068, Hubei, China.

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http://dx.doi.org/10.18632/oncotarget.25122DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5973869PMC
May 2018

Variation in Raw Milk Microbiota Throughout 12 Months and the Impact of Weather Conditions.

Sci Rep 2018 02 5;8(1):2371. Epub 2018 Feb 5.

State Key Laboratory of Dairy Biotechnology, Shanghai Engineering Research Center of Dairy Biotechnology, Synergetic Innovation Center for Food Safety and Nutrition, Dairy Research Institute, Bright Dairy & Food Co., Ltd., Shanghai, 200436, China.

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http://dx.doi.org/10.1038/s41598-018-20862-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5799204PMC
February 2018

Genome-wide alteration in DNA hydroxymethylation in the sperm from bisphenol A-exposed men.

PLoS One 2017 5;12(6):e0178535. Epub 2017 Jun 5.

Key Laboratory of Reproduction Regulation of NPFPC, SIPPR, IRD, Fudan University, Shanghai, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0178535PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5459435PMC
September 2017

Altered Gut Microbiota Composition Associated with Eczema in Infants.

PLoS One 2016 3;11(11):e0166026. Epub 2016 Nov 3.

Division of Research, Kaiser Foundation Research Institute, 2000 Broadway, Oakland, CA 94612, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0166026PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5094743PMC
June 2017

Genomic and transcriptomic analyses reveal distinct biological functions for cold shock proteins (VpaCspA and VpaCspD) in Vibrio parahaemolyticus CHN25 during low-temperature survival.

BMC Genomics 2017 06 5;18(1):436. Epub 2017 Jun 5.

Key Laboratory of Quality and Safety Risk Assessment for Aquatic Products on Storage and Preservation (Shanghai), China Ministry of Agriculture; College of Food Science and Technology, Shanghai Ocean University, 999 Hu Cheng Huan Road, Shanghai, 201306, People's Republic of China.

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http://dx.doi.org/10.1186/s12864-017-3784-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5460551PMC
June 2017

Identification and evaluation of the novel immunodominant antigen Rv2351c from Mycobacterium tuberculosis.

Emerg Microbes Infect 2017 Jun 7;6(6):e48. Epub 2017 Jun 7.

State Key Laboratory for Infectious Diseases Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.

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http://dx.doi.org/10.1038/emi.2017.34DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5520311PMC
June 2017

IRS-2 rs1805097 polymorphism is associated with the decreased risk of colorectal cancer.

Oncotarget 2017 Apr;8(15):25107-25114

Department of Digestion, The Second Affiliated Hospital of Zhejiang Chinese Medical University, Hangzhou, Zhejiang, China.

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http://dx.doi.org/10.18632/oncotarget.15342DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5421913PMC
April 2017

Preparation of SERS-active substrates based on graphene oxide/silver nanocomposites for rapid zdetection of l-Theanine.

Food Chem 2017 Feb 6;217:511-516. Epub 2016 Sep 6.

College of Optical and Electronic Technology, China Jiliang University, 310018 Hangzhou, China. Electronic address:

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http://dx.doi.org/10.1016/j.foodchem.2016.09.010DOI Listing
February 2017

Genomic Analysis of a New Serovar of Serogroup Manhao.

Front Microbiol 2017 2;8:149. Epub 2017 Feb 2.

Key Laboratory of the Ministry of Health for Research on Quality and Standardization of Biotech Products, National Institutes for Food and Drug Control Beijing, China.

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http://dx.doi.org/10.3389/fmicb.2017.00149DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5288384PMC
February 2017

Chemotaxis without Conventional Two-Component System, Based on Cell Polarity and Aerobic Conditions in Helicity-Switching Swimming of .

Front Microbiol 2017 3;8:58. Epub 2017 Feb 3.

Department of Biology, Graduate School of Science, Osaka City UniversityOsaka, Japan; The OCU Advanced Research Institute for Natural Science and Technology, Osaka City UniversityOsaka, Japan.

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http://dx.doi.org/10.3389/fmicb.2017.00058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5289999PMC
February 2017

Gsy, a novel glucansucrase from Leuconostoc mesenteroides, mediates the formation of cell aggregates in response to oxidative stress.

Sci Rep 2016 12 7;6:38122. Epub 2016 Dec 7.

State Key Laboratory of Dairy Biotechnology, Institute of Bright Dairy &Food Co., Ltd., 1518 West Jiangchang Road, Shanghai 200436, PR China.

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http://dx.doi.org/10.1038/srep38122DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5141493PMC
December 2016

Tracking Cefoperazone/Sulbactam Resistance Development In vivo in A. baumannii Isolated from a Patient with Hospital-Acquired Pneumonia by Whole-Genome Sequencing.

Front Microbiol 2016 19;7:1268. Epub 2016 Aug 19.

Institute of Antibiotics, Huashan Hospital, Fudan UniversityShanghai, China; Key Laboratory of Clinical Pharmacology of Antibiotics, National Population and Family Planning CommissionShanghai, China.

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http://dx.doi.org/10.3389/fmicb.2016.01268DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4990596PMC
September 2016

A systematic study of the whole genome sequence of strain 239 provides an insight into its physiological and taxonomic properties which correlate with its position in the genus.

Synth Syst Biotechnol 2016 Sep 1;1(3):169-186. Epub 2016 Sep 1.

State Key Laboratory of Genetic Engineering, Department of Microbiology, School of Life Sciences and Institute of Biomedical Sciences, Fudan University, Shanghai, 200438, China.

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http://dx.doi.org/10.1016/j.synbio.2016.05.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5640789PMC
September 2016

Strand-specific RNA-seq analysis of the Lactobacillus delbrueckii subsp. bulgaricus transcriptome.

Mol Biosyst 2016 Feb;12(2):508-19

Laboratory of Medical Foods, Shanghai Institute of Planned Parenthood Research, 2140 Xie-Tu Road, Shanghai 200032, China. and Division of Research and Development, Meiji Co., Ltd, 540 Naruda, Odawara, Kanagawa 250-0862, Japan.

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http://dx.doi.org/10.1039/c5mb00547gDOI Listing
February 2016

Whole genome sequencing revealed host adaptation-focused genomic plasticity of pathogenic Leptospira.

Sci Rep 2016 Feb 2;6:20020. Epub 2016 Feb 2.

Key Laboratory of the Ministry of Health for Research on Quality and Standardization of Biotech Products, National Institutes of Food and Drug Control, Beijing 100050, People's Republic of China.

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http://dx.doi.org/10.1038/srep20020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4735792PMC
February 2016

Genomic analysis of a Mycobacterium bovis bacillus [corrected] Calmette-Guérin strain isolated from an adult patient with pulmonary tuberculosis..

PLoS One 2015 13;10(4):e0122403. Epub 2015 Apr 13.

Division of Bacterial Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agriculture, Harbin 150001, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0122403PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4395146PMC
January 2016

Changes in pathogenicity and immunogenicity of Mycoplasma mycoides subsp. mycoides strains revealed by comparative genomics analysis.

Sci Rep 2016 Jan 11;6:19081. Epub 2016 Jan 11.

National Contagious Bovine Pleuropneumonia Reference Laboratory, Division of Bacterial Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, CAAS, Harbin, China.

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http://dx.doi.org/10.1038/srep19081DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4707488PMC
January 2016

Complete genome sequence of a malodorant-producing acetogen, Clostridium scatologenes ATCC 25775(T).

J Biotechnol 2015 Oct 22;212:19-20. Epub 2015 Jul 22.

State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing, PR China; College of Life Science and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, PR China; National Engineering Technique Research Center for Biotechnology, Nanjing, PR China; Jiangsu Branch of China Academy of Science & Technology Development, Nanjing, PR China. Electronic address:

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http://dx.doi.org/10.1016/j.jbiotec.2015.07.013DOI Listing
October 2015

Genome analysis and in vivo virulence of porcine extraintestinal pathogenic Escherichia coli strain PCN033.

BMC Genomics 2015 Sep 21;16:717. Epub 2015 Sep 21.

State Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, China.

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http://dx.doi.org/10.1186/s12864-015-1890-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4578781PMC
September 2015

Complete genome sequence of Lysinibacillus varians GY32, a bacterium with filament-to-rod cell cycle.

FEMS Microbiol Lett 2015 Jan 4;362(1):1-3. Epub 2014 Dec 4.

Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Institute of Microbiology, 100 Xianlie Road, Yuexiu District, Guangzhou 510070, Guangdong, China State Key Laboratory of Applied Microbiology Southern China, 100 Xianlie Road, Yuexiu District, Guangzhou 510070, Guangdong, China

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http://dx.doi.org/10.1093/femsle/fnu010DOI Listing
January 2015

[Adaptation of Acidianus hospitalis W1 to oligotrophic and acidic hot spring environments].

Wei Sheng Wu Xue Bao 2014 Oct;54(10):1193-203

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October 2014

Revealing of Mycobacterium marinum transcriptome by RNA-seq.

PLoS One 2013 30;8(9):e75828. Epub 2013 Sep 30.

Key Laboratory of Medical Molecular Virology, Institutes of Biomedical Sciences and Institute of Medical Microbiology, Shanghai Medical College, Fudan University, Shanghai, P. R. China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0075828PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3786904PMC
June 2014

Genome sequencing and analysis of BCG vaccine strains.

PLoS One 2013 19;8(8):e71243. Epub 2013 Aug 19.

National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control, Beijing, China ; Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0071243PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3747166PMC
April 2014

Plasmid-mediated multidrug resistance and virulence in an avian pathogenic Escherichia coli strain isolated in China.

J Glob Antimicrob Resist 2014 Mar 8;2(1):57-58. Epub 2013 Nov 8.

State Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, China. Electronic address:

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http://dx.doi.org/10.1016/j.jgar.2013.10.004DOI Listing
March 2014

Draft Genome Sequence of Ralstonia solanacearum Race 4 Biovar 4 Strain SD54.

Genome Announc 2013 Dec 19;1(6). Epub 2013 Dec 19.

Life Science College, Shandong Normal University, Jinan, China.

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http://dx.doi.org/10.1128/genomeA.00890-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3868847PMC
December 2013

RNA-seq-based comparative transcriptome analysis of the syngas-utilizing bacterium Clostridium ljungdahlii DSM 13528 grown autotrophically and heterotrophically.

Mol Biosyst 2013 Nov;9(11):2775-84

Key Laboratory of Biofuels, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Songling Road No. 189, Qingdao 266101, China.

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http://dx.doi.org/10.1039/c3mb70232dDOI Listing
November 2013

The genome of the hydatid tapeworm Echinococcus granulosus.

Nat Genet 2013 Oct 8;45(10):1168-75. Epub 2013 Sep 8.

1] Shanghai-Ministry of Science and Technology Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center at Shanghai, Shanghai, China. [2].

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http://dx.doi.org/10.1038/ng.2757DOI Listing
October 2013

A genome-wide analysis of multidrug-resistant and extensively drug-resistant strains of Mycobacterium tuberculosis Beijing genotype.

Mol Genet Genomics 2013 Sep 26;288(9):425-36. Epub 2013 Jun 26.

College of Life Sciences, Fudan University, Shanghai, 200433, People's Republic of China.

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http://dx.doi.org/10.1007/s00438-013-0758-4DOI Listing
September 2013

Comparison of genomes of Brucella melitensis M28 and the B. melitensis M5-90 derivative vaccine strain highlights the translation elongation factor Tu gene tuf2 as an attenuation-related gene.

Infect Immun 2013 Aug 28;81(8):2812-8. Epub 2013 May 28.

State Key Laboratory of Veterinary Biotechnology and Zoonosis Laboratory of the Ministry of Agriculture, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, Heilongjiang, China.

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http://dx.doi.org/10.1128/IAI.00224-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3719578PMC
August 2013

19-VNTR loci used in genotyping Chinese clinical Mycobacterium tuberculosis complex strains and in association with spoligotyping.

J Basic Microbiol 2013 Jul 15;53(7):562-80. Epub 2013 Jan 15.

National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control, Beijing, PR China.

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http://dx.doi.org/10.1002/jobm.201200230DOI Listing
July 2013

ContigScape: a Cytoscape plugin facilitating microbial genome gap closing.

BMC Genomics 2013 Apr 30;14:289. Epub 2013 Apr 30.

State Key Laboratory of Genetic Engineering, Department of Microbiology, School of Life Sciences, Fudan University, Shanghai 200433, China.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-14-289DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3651407PMC
April 2013

Dynamic population changes in Mycobacterium tuberculosis during acquisition and fixation of drug resistance in patients.

J Infect Dis 2012 Dec 14;206(11):1724-33. Epub 2012 Sep 14.

Key Laboratory of Medical Molecular Virology, Institutes of Biomedical Sciences and Institute of Medical Microbiology, Fudan University, Shanghai, China.

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http://dx.doi.org/10.1093/infdis/jis601DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3488197PMC
December 2012

A model of proteolysis and amino acid biosynthesis for Lactobacillus delbrueckii subsp. bulgaricus in whey.

Curr Microbiol 2012 Dec 18;65(6):742-51. Epub 2012 Sep 18.

Graduate School of Bioresource Sciences, Nihon University, 1866 Kameino, Fujisawa, Kanagawa 252-0880, Japan.

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http://link.springer.com/content/pdf/10.1007/s00284-012-0214
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http://link.springer.com/10.1007/s00284-012-0214-4
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http://dx.doi.org/10.1007/s00284-012-0214-4DOI Listing
December 2012

Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy.

J Bacteriol 2012 Oct;194(20):5699-700

State Key Laboratory of Genetic Engineering, Department of Microbiology, School of Life Sciences and Institute of Biomedical Sciences, Fudan University, Shanghai, China.

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http://dx.doi.org/10.1128/JB.01295-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3458657PMC
October 2012

The genome characteristics and predicted function of methyl-group oxidation pathway in the obligate aceticlastic methanogens, Methanosaeta spp.

PLoS One 2012 10;7(5):e36756. Epub 2012 May 10.

State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, People's Republic of China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0036756PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3349665PMC
September 2012

Edwardsiella comparative phylogenomics reveal the new intra/inter-species taxonomic relationships, virulence evolution and niche adaptation mechanisms.

PLoS One 2012 10;7(5):e36987. Epub 2012 May 10.

State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, People's Republic of China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0036987PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3349661PMC
September 2012

In silico analysis of amino acid biosynthesis and proteolysis in Lactobacillus delbrueckii subsp. bulgaricus 2038 and the implications for bovine milk fermentation.

Biotechnol Lett 2012 Aug 11;34(8):1545-51. Epub 2012 Jul 11.

Shanghai-MOST Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center at Shanghai, 250 Bi-Bo Road, Zhang Jiang Hi-Tech Park, Shanghai, 201203, China.

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http://dx.doi.org/10.1007/s10529-012-1006-4DOI Listing
August 2012

Genomic and transcriptomic insights into the thermo-regulated biosynthesis of validamycin in Streptomyces hygroscopicus 5008.

BMC Genomics 2012 Jul 24;13:337. Epub 2012 Jul 24.

State Key Laboratory of Microbial Metabolism, and School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, Shanghai, 200030, China.

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http://dx.doi.org/10.1186/1471-2164-13-337DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3424136PMC
July 2012

Complete genome sequence of Pasteurella multocida HN06, a toxigenic strain of serogroup D.

J Bacteriol 2012 Jun;194(12):3292-3

State Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, China.

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http://dx.doi.org/10.1128/JB.00215-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3370874PMC
June 2012

Bacterial biosynthesis and maturation of the didemnin anti-cancer agents.

J Am Chem Soc 2012 May 6;134(20):8625-32. Epub 2012 Apr 6.

KAUST Global Collaborative Research, Division of Life Science, School of Science, Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong, China.

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http://dx.doi.org/10.1021/ja301735aDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3401512PMC
May 2012

Draft genome sequence of marine Streptomyces sp. strain W007, which produces angucyclinone antibiotics with a benz[a]anthracene skeleton.

J Bacteriol 2012 Mar;194(6):1628-9

Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China.

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http://dx.doi.org/10.1128/JB.06701-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3294854PMC
March 2012

Complete genome of Leptospirillum ferriphilum ML-04 provides insight into its physiology and environmental adaptation.

J Microbiol 2011 Dec 28;49(6):890-901. Epub 2011 Dec 28.

State Key Laboratory of Microbial Technology, Shandong University, Jinan 250100, P. R. China.

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http://link.springer.com/10.1007/s12275-011-1099-9
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http://dx.doi.org/10.1007/s12275-011-1099-9DOI Listing
December 2011

Global identification of transcription start sites in the genome of Apis mellifera using 5'LongSAGE.

J Exp Zool B Mol Dev Evol 2011 Nov 21;316(7):500-14. Epub 2011 Jun 21.

Shanghai-MOST Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center at Shanghai, Shanghai, PR China.

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http://dx.doi.org/10.1002/jez.b.21421DOI Listing
November 2011

The complete genome sequence of Mycoplasma bovis strain Hubei-1.

PLoS One 2011 22;6(6):e20999. Epub 2011 Jun 22.

National Contagious Bovine Pleuropneumonia Reference Laboratory, Division of Bacterial Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, The Chinese Academy of Agricultural Sciences (CAAS), Harbin, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0020999PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3120828PMC
November 2011

Complete genome sequence of Haloarcula hispanica, a Model Haloarchaeon for studying genetics, metabolism, and virus-host interaction.

J Bacteriol 2011 Nov;193(21):6086-7

State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China.

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http://jb.asm.org/cgi/doi/10.1128/JB.05953-11
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http://dx.doi.org/10.1128/JB.05953-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3194904PMC
November 2011

Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional Chinese medicine.

Genome Biol 2011 Nov 23;12(11):R116. Epub 2011 Nov 23.

Key Laboratory of Insect Developmental and Evolutionary Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.

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http://link.springer.com/content/pdf/10.1186%2Fgb-2011-12-11
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http://genomebiology.biomedcentral.com/articles/10.1186/gb-2
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http://dx.doi.org/10.1186/gb-2011-12-11-r116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3334602PMC
November 2011

Genome sequence of a porcine extraintestinal pathogenic Escherichia coli strain.

J Bacteriol 2011 Sep 8;193(18):5038. Epub 2011 Jul 8.

State Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, People’s Republic of China.

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http://dx.doi.org/10.1128/JB.05551-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3165708PMC
September 2011

Comparative proteogenomic analysis of the Leptospira interrogans virulence-attenuated strain IPAV against the pathogenic strain 56601.

Cell Res 2011 Aug 22;21(8):1210-29. Epub 2011 Mar 22.

Department of Medical Microbiology and Parasitology, Institutes of Medical Sciences, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China.

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http://www.nature.com/articles/cr201146
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http://dx.doi.org/10.1038/cr.2011.46DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3193473PMC
August 2011

Complete genome sequence of Metallosphaera cuprina, a metal sulfide-oxidizing archaeon from a hot spring.

J Bacteriol 2011 Jul 6;193(13):3387-8. Epub 2011 May 6.

Institute of Microbiology, Beijing, People's Republic of China.

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http://dx.doi.org/10.1128/JB.05038-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3133273PMC
July 2011

Complete genome sequence of Bacillus thuringiensis subsp. chinensis strain CT-43.

J Bacteriol 2011 Jul 6;193(13):3407-8. Epub 2011 May 6.

Huazhong Agricultural University, Wuhan, Hubei 430070, People's Republic of China.

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http://dx.doi.org/10.1128/JB.05085-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3133296PMC
July 2011

Comparative genomic and transcriptomic analysis revealed genetic characteristics related to solvent formation and xylose utilization in Clostridium acetobutylicum EA 2018.

BMC Genomics 2011 Feb 2;12:93. Epub 2011 Feb 2.

Key Laboratory of Synthetic Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China.

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http://dx.doi.org/10.1186/1471-2164-12-93DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3044671PMC
February 2011

Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism.

Cell Res 2010 Oct 22;20(10):1096-108. Epub 2010 Jun 22.

Key Laboratory of Synthetic Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China.

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http://dx.doi.org/10.1038/cr.2010.87DOI Listing
October 2010

Analysis of the microbiota of sputum samples from patients with lower respiratory tract infections.

Acta Biochim Biophys Sin (Shanghai) 2010 Oct 7;42(10):754-61. Epub 2010 Sep 7.

Department of Medical Microbiology and Parasitology, Institutes of Medical Sciences, Shanghai Jiao Tong University School of Medicine, China.

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http://dx.doi.org/10.1093/abbs/gmq081DOI Listing
October 2010

Complete genome sequence of Bacillus thuringiensis mutant strain BMB171.

J Bacteriol 2010 Aug 4;192(15):4074-5. Epub 2010 Jun 4.

State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei 430070, People's Republic of China.

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http://dx.doi.org/10.1128/JB.00562-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2916366PMC
August 2010

Complete genome sequence of Bifidobacterium longum JDM301.

J Bacteriol 2010 Aug 4;192(15):4076-7. Epub 2010 Jun 4.

Department of Medical Microbiology and Parasitology, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China.

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http://dx.doi.org/10.1128/JB.00538-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2916372PMC
August 2010

The complete genome of Comamonas testosteroni reveals its genetic adaptations to changing environments.

Appl Environ Microbiol 2009 Nov 4;75(21):6812-9. Epub 2009 Sep 4.

State Key Laboratory of Microbial Resources, Environmental Microbiology and Biotechnology Research Center at Institute of Microbiology, Beijing 100101, People's Republic of China.

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http://dx.doi.org/10.1128/AEM.00933-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2772449PMC
November 2009

Opisthorchis viverrini: Gene expression profiling of carcinogenic adult liver fluke worms using 5' SAGE.

Exp Parasitol 2008 Dec 24;120(4):306-13. Epub 2008 Aug 24.

Department of Biochemistry, and Liver Fluke and Cholangiocarcinoma Research Center, Faculty of Medicine, Khon Kaen University, Khon Kaen 40002, Thailand.

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http://dx.doi.org/10.1016/j.exppara.2008.08.004DOI Listing
December 2008

Genome size and sequence composition of moso bamboo: a comparative study.

Sci China C Life Sci 2007 Oct;50(5):700-5

Institute of Crop Science/Institute of Bioinformatics, Zhejiang University, Hangzhou 310029, China.

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http://dx.doi.org/10.1007/s11427-007-0081-6DOI Listing
October 2007