Honglong Wu

Honglong Wu

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Honglong Wu

Honglong Wu

Publications by authors named "Honglong Wu"

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37Publications

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Diminishing microbiome richness and distinction in the lower respiratory tract of lung cancer patients: A multiple comparative study design with independent validation.

Lung Cancer 2019 Oct 21;136:129-135. Epub 2019 Aug 21.

Department of Respiratory & Critical Care Medicine, West China Hospital, Sichuan University, Chengdu, Sichuan Province, 610041, China. Electronic address:

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http://dx.doi.org/10.1016/j.lungcan.2019.08.022DOI Listing
October 2019

Detection of pathogens from resected heart valves of patients with infective endocarditis by next-generation sequencing.

Int J Infect Dis 2019 Jun 27;83:148-153. Epub 2019 Mar 27.

State Key Laboratory of Cardiovascular Disease, Beijing Key Laboratory for Molecular Diagnostics of Cardiovascular Diseases, Diagnostic Laboratory Service, Fuwai Hospital, National Center for Cardiovascular Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100037, China. Electronic address:

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http://dx.doi.org/10.1016/j.ijid.2019.03.007DOI Listing
June 2019

Metagenomics Biomarkers Selected for Prediction of Three Different Diseases in Chinese Population.

Biomed Res Int 2018 11;2018:2936257. Epub 2018 Jan 11.

Wuhan National Laboratory for Optoelectronics, Key Laboratory of Information Storage System, Huazhong University of Science and Technology, Wuhan, Hubei 430000, China.

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https://www.hindawi.com/journals/bmri/2018/2936257/
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http://dx.doi.org/10.1155/2018/2936257DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5820663PMC
September 2018

Next-Generation Sequencing of Cerebrospinal Fluid for the Diagnosis of Neurocysticercosis.

Front Neurol 2018 19;9:471. Epub 2018 Jun 19.

Department of Neurology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.

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http://dx.doi.org/10.3389/fneur.2018.00471DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6018529PMC
June 2018

Dynamic and direct pathogen load surveillance to monitor disease progression and therapeutic efficacy in central nervous system infection using a novel semi-quantitive sequencing platform.

J Infect 2018 03 13;76(3):307-310. Epub 2017 Nov 13.

Department of infectious disease, Huashan Hospital of Fudan University, Shanghai, China. Electronic address:

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http://dx.doi.org/10.1016/j.jinf.2017.11.002DOI Listing
March 2018

Next generation sequencing based pathogen analysis in a patient with neurocysticercosis: a case report.

BMC Infect Dis 2018 03 6;18(1):113. Epub 2018 Mar 6.

Department of Neurology, First Affiliated Hospital, Zhejiang University School of Medicine, 79 Qingchun Road, Hangzhou, 310003, China.

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http://dx.doi.org/10.1186/s12879-018-3015-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5840791PMC
March 2018

Next-generation sequencing of the cerebrospinal fluid in the diagnosis of neurobrucellosis.

Int J Infect Dis 2018 Feb 28;67:20-24. Epub 2017 Nov 28.

Department of Neurology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100730, China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S12019712173031
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http://dx.doi.org/10.1016/j.ijid.2017.11.028DOI Listing
February 2018

Exiguobacterium sp. A1b/GX59 isolated from a patient with community-acquired pneumonia and bacteremia: genomic characterization and literature review.

BMC Infect Dis 2017 07 21;17(1):508. Epub 2017 Jul 21.

Department of Laboratory Medicine, Civil Aviation General Hospital, Peking University Civil Aviation School of Clinical Medicine, No1. Gaojing Street, Chaoyang District, Beijing, 100123, China.

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http://dx.doi.org/10.1186/s12879-017-2616-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5521131PMC
July 2017

Detection of Listeria monocytogenes in CSF from Three Patients with Meningoencephalitis by Next-Generation Sequencing.

J Clin Neurol 2016 Oct 26;12(4):446-451. Epub 2016 Jul 26.

Binhai Genomics Institute, Tianjin Translational Genomics Center, BGI-Tianjin, BGI-Shenzhen, Tianjin, China.

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http://dx.doi.org/10.3988/jcn.2016.12.4.446DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5063871PMC
October 2016

Diagnosis of Sepsis with Cell-free DNA by Next-Generation Sequencing Technology in ICU Patients.

Arch Med Res 2016 07;47(5):365-371

Binhai Genomics Institute, Tianjin Translational Genomics Center, BGI-Tianjin, BGI-Shenzhen, Tianjin, China; Complete Genomics, Inc., Mountain View, California, USA; Shenzhen Key Laboratory of Unknown Pathogen Identification, Shenzhen, China; BGI-Shenzhen, Shenzhen, China. Electronic address:

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http://dx.doi.org/10.1016/j.arcmed.2016.08.004DOI Listing
July 2016

Type 2 Diabetes Biomarkers of Human Gut Microbiota Selected via Iterative Sure Independent Screening Method.

PLoS One 2015 19;10(10):e0140827. Epub 2015 Oct 19.

Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, Hubei, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0140827PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4610706PMC
June 2016

Detection of virus in CSF from the cases with meningoencephalitis by next-generation sequencing.

J Neurovirol 2016 Apr 27;22(2):240-5. Epub 2015 Oct 27.

Department of Neurology, Peking Union Medical College Hospital, Peking Union Medical College and Chinese Academy of Medical Sciences, Beijing, 100730, China.

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http://dx.doi.org/10.1007/s13365-015-0390-7DOI Listing
April 2016

Genome-wide DNA methylation changes between the superficial and deep backfat tissues of the pig.

Int J Mol Sci 2012 8;13(6):7098-108. Epub 2012 Jun 8.

Institute of Animal Genetics & Breeding, College of Animal Science & Technology, Sichuan Agricultural University, Ya'an 625000, China; E-Mails: (M.L.); (T.W.); (J.Z.); (C.Z.); (A.J.).

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http://dx.doi.org/10.3390/ijms13067098DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3397513PMC
September 2015

De novo assembly of a haplotype-resolved human genome.

Nat Biotechnol 2015 Jun 25;33(6):617-22. Epub 2015 May 25.

1] BGI-Shenzhen, Shenzhen, China. [2] Department of Biology, University of Copenhagen, Copenhagen, Denmark. [3] Princess Al Jawhara Albrahim Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Jeddah, Saudi Arabia. [4] Macau University of Science and Technology, Taipa, Macau, China. [5] Department of Medicine and State Key Laboratory of Pharmaceutical Biotechnology, University of Hong Kong, Hong Kong, China.

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http://dx.doi.org/10.1038/nbt.3200DOI Listing
June 2015

DNA methylation and mRNA and microRNA expression of SLE CD4+ T cells correlate with disease phenotype.

J Autoimmun 2014 Nov 3;54:127-36. Epub 2014 Aug 3.

Department of Dermatology, The Second Xiangya Hospital, Central South University, Hunan Key Laboratory of Medical Epigenomics, Changsha, Hunan, China. Electronic address:

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http://dx.doi.org/10.1016/j.jaut.2014.07.002DOI Listing
November 2014

Co-methylated genes in different adipose depots of pig are associated with metabolic, inflammatory and immune processes.

Int J Biol Sci 2012 10;8(6):831-7. Epub 2012 Jun 10.

Institute of Animal Genetics and Breeding, College of Animal Science and Technology, Sichuan Agricultural University, Ya'an, Sichuan, China.

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http://dx.doi.org/10.7150/ijbs.4493DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3372887PMC
October 2012

International network of cancer genome projects.

Authors:
Thomas J Hudson Warwick Anderson Axel Artez Anna D Barker Cindy Bell Rosa R Bernabé M K Bhan Fabien Calvo Iiro Eerola Daniela S Gerhard Alan Guttmacher Mark Guyer Fiona M Hemsley Jennifer L Jennings David Kerr Peter Klatt Patrik Kolar Jun Kusada David P Lane Frank Laplace Lu Youyong Gerd Nettekoven Brad Ozenberger Jane Peterson T S Rao Jacques Remacle Alan J Schafer Tatsuhiro Shibata Michael R Stratton Joseph G Vockley Koichi Watanabe Huanming Yang Matthew M F Yuen Bartha M Knoppers Martin Bobrow Anne Cambon-Thomsen Lynn G Dressler Stephanie O M Dyke Yann Joly Kazuto Kato Karen L Kennedy Pilar Nicolás Michael J Parker Emmanuelle Rial-Sebbag Carlos M Romeo-Casabona Kenna M Shaw Susan Wallace Georgia L Wiesner Nikolajs Zeps Peter Lichter Andrew V Biankin Christian Chabannon Lynda Chin Bruno Clément Enrique de Alava Françoise Degos Martin L Ferguson Peter Geary D Neil Hayes Thomas J Hudson Amber L Johns Arek Kasprzyk Hidewaki Nakagawa Robert Penny Miguel A Piris Rajiv Sarin Aldo Scarpa Tatsuhiro Shibata Marc van de Vijver P Andrew Futreal Hiroyuki Aburatani Mónica Bayés David D L Botwell Peter J Campbell Xavier Estivill Daniela S Gerhard Sean M Grimmond Ivo Gut Martin Hirst Carlos López-Otín Partha Majumder Marco Marra John D McPherson Hidewaki Nakagawa Zemin Ning Xose S Puente Yijun Ruan Tatsuhiro Shibata Michael R Stratton Hendrik G Stunnenberg Harold Swerdlow Victor E Velculescu Richard K Wilson Hong H Xue Liu Yang Paul T Spellman Gary D Bader Paul C Boutros Peter J Campbell Paul Flicek Gad Getz Roderic Guigó Guangwu Guo David Haussler Simon Heath Tim J Hubbard Tao Jiang Steven M Jones Qibin Li Nuria López-Bigas Ruibang Luo Lakshmi Muthuswamy B F Francis Ouellette John V Pearson Xose S Puente Victor Quesada Benjamin J Raphael Chris Sander Tatsuhiro Shibata Terence P Speed Lincoln D Stein Joshua M Stuart Jon W Teague Yasushi Totoki Tatsuhiko Tsunoda Alfonso Valencia David A Wheeler Honglong Wu Shancen Zhao Guangyu Zhou Lincoln D Stein Roderic Guigó Tim J Hubbard Yann Joly Steven M Jones Arek Kasprzyk Mark Lathrop Nuria López-Bigas B F Francis Ouellette Paul T Spellman Jon W Teague Gilles Thomas Alfonso Valencia Teruhiko Yoshida Karen L Kennedy Myles Axton Stephanie O M Dyke P Andrew Futreal Daniela S Gerhard Chris Gunter Mark Guyer Thomas J Hudson John D McPherson Linda J Miller Brad Ozenberger Kenna M Shaw Arek Kasprzyk Lincoln D Stein Junjun Zhang Syed A Haider Jianxin Wang Christina K Yung Anthony Cros Anthony Cross Yong Liang Saravanamuttu Gnaneshan Jonathan Guberman Jack Hsu Martin Bobrow Don R C Chalmers Karl W Hasel Yann Joly Terry S H Kaan Karen L Kennedy Bartha M Knoppers William W Lowrance Tohru Masui Pilar Nicolás Emmanuelle Rial-Sebbag Laura Lyman Rodriguez Catherine Vergely Teruhiko Yoshida Sean M Grimmond Andrew V Biankin David D L Bowtell Nicole Cloonan Anna deFazio James R Eshleman Dariush Etemadmoghadam Brooke B Gardiner Brooke A Gardiner James G Kench Aldo Scarpa Robert L Sutherland Margaret A Tempero Nicola J Waddell Peter J Wilson John D McPherson Steve Gallinger Ming-Sound Tsao Patricia A Shaw Gloria M Petersen Debabrata Mukhopadhyay Lynda Chin Ronald A DePinho Sarah Thayer Lakshmi Muthuswamy Kamran Shazand Timothy Beck Michelle Sam Lee Timms Vanessa Ballin Youyong Lu Jiafu Ji Xiuqing Zhang Feng Chen Xueda Hu Guangyu Zhou Qi Yang Geng Tian Lianhai Zhang Xiaofang Xing Xianghong Li Zhenggang Zhu Yingyan Yu Jun Yu Huanming Yang Mark Lathrop Jörg Tost Paul Brennan Ivana Holcatova David Zaridze Alvis Brazma Lars Egevard Egor Prokhortchouk Rosamonde Elizabeth Banks Mathias Uhlén Anne Cambon-Thomsen Juris Viksna Fredrik Ponten Konstantin Skryabin Michael R Stratton P Andrew Futreal Ewan Birney Ake Borg Anne-Lise Børresen-Dale Carlos Caldas John A Foekens Sancha Martin Jorge S Reis-Filho Andrea L Richardson Christos Sotiriou Hendrik G Stunnenberg Giles Thoms Marc van de Vijver Laura van't Veer Fabien Calvo Daniel Birnbaum Hélène Blanche Pascal Boucher Sandrine Boyault Christian Chabannon Ivo Gut Jocelyne D Masson-Jacquemier Mark Lathrop Iris Pauporté Xavier Pivot Anne Vincent-Salomon Eric Tabone Charles Theillet Gilles Thomas Jörg Tost Isabelle Treilleux Fabien Calvo Paulette Bioulac-Sage Bruno Clément Thomas Decaens Françoise Degos Dominique Franco Ivo Gut Marta Gut Simon Heath Mark Lathrop Didier Samuel Gilles Thomas Jessica Zucman-Rossi Peter Lichter Roland Eils Benedikt Brors Jan O Korbel Andrey Korshunov Pablo Landgraf Hans Lehrach Stefan Pfister Bernhard Radlwimmer Guido Reifenberger Michael D Taylor Christof von Kalle Partha P Majumder Rajiv Sarin T S Rao M K Bhan Aldo Scarpa Paolo Pederzoli Rita A Lawlor Massimo Delledonne Alberto Bardelli Andrew V Biankin Sean M Grimmond Thomas Gress David Klimstra Giuseppe Zamboni Tatsuhiro Shibata Yusuke Nakamura Hidewaki Nakagawa Jun Kusada Tatsuhiko Tsunoda Satoru Miyano Hiroyuki Aburatani Kazuto Kato Akihiro Fujimoto Teruhiko Yoshida Elias Campo Carlos López-Otín Xavier Estivill Roderic Guigó Silvia de Sanjosé Miguel A Piris Emili Montserrat Marcos González-Díaz Xose S Puente Pedro Jares Alfonso Valencia Heinz Himmelbauer Heinz Himmelbaue Victor Quesada Silvia Bea Michael R Stratton P Andrew Futreal Peter J Campbell Anne Vincent-Salomon Andrea L Richardson Jorge S Reis-Filho Marc van de Vijver Gilles Thomas Jocelyne D Masson-Jacquemier Samuel Aparicio Ake Borg Anne-Lise Børresen-Dale Carlos Caldas John A Foekens Hendrik G Stunnenberg Laura van't Veer Douglas F Easton Paul T Spellman Sancha Martin Anna D Barker Lynda Chin Francis S Collins Carolyn C Compton Martin L Ferguson Daniela S Gerhard Gad Getz Chris Gunter Alan Guttmacher Mark Guyer D Neil Hayes Eric S Lander Brad Ozenberger Robert Penny Jane Peterson Chris Sander Kenna M Shaw Terence P Speed Paul T Spellman Joseph G Vockley David A Wheeler Richard K Wilson Thomas J Hudson Lynda Chin Bartha M Knoppers Eric S Lander Peter Lichter Lincoln D Stein Michael R Stratton Warwick Anderson Anna D Barker Cindy Bell Martin Bobrow Wylie Burke Francis S Collins Carolyn C Compton Ronald A DePinho Douglas F Easton P Andrew Futreal Daniela S Gerhard Anthony R Green Mark Guyer Stanley R Hamilton Tim J Hubbard Olli P Kallioniemi Karen L Kennedy Timothy J Ley Edison T Liu Youyong Lu Partha Majumder Marco Marra Brad Ozenberger Jane Peterson Alan J Schafer Paul T Spellman Hendrik G Stunnenberg Brandon J Wainwright Richard K Wilson Huanming Yang

Nature 2010 Apr;464(7291):993-8

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http://dx.doi.org/10.1038/nature08987DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2902243PMC
April 2010