Publications by authors named "Holly C Beale"

10Publications

Identification of a differentiation stall in epithelial mesenchymal transition in histone H3-mutant diffuse midline glioma.

Authors:

Lauren M Sanders Allison Cheney Lucas Seninge Anouk van den Bout Marissa Chen Holly C Beale Ellen Towle Kephart Jacob Pfeil Katrina Learned A Geoffrey Lyle Isabel Bjork David Haussler Sofie R Salama Olena M Vaske

Gigascience 2020 Dec;9(12)

University of California Santa Cruz Genomics Institute, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA.

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December 2020

Hydra: A mixture modeling framework for subtyping pediatric cancer cohorts using multimodal gene expression signatures.

Authors:

Jacob Pfeil Lauren M Sanders Ioannis Anastopoulos A Geoffrey Lyle Alana S Weinstein Yuanqing Xue Andrew Blair Holly C Beale Alex Lee Stanley G Leung Phuong T Dinh Avanthi Tayi Shah Marcus R Breese W Patrick Devine Isabel Bjork Sofie R Salama E Alejandro Sweet-Cordero David Haussler Olena Morozova Vaske

PLoS Comput Biol 2020 04 10;16(4):e1007753. Epub 2020 Apr 10.

Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, United States of America.

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April 2020

Bayesian Framework for Detecting Gene Expression Outliers in Individual Samples.

Authors:

John Vivian Jordan M Eizenga Holly C Beale Olena M Vaske Benedict Paten

JCO Clin Cancer Inform 2020 02;4:160-170

Computational Genomics Laboratory, University of California, Santa Cruz, Santa Cruz, CA.

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February 2020

Comparative RNA-seq analysis aids in diagnosis of a rare pediatric tumor.

Cold Spring Harb Mol Case Stud 2019 10 23;5(5). Epub 2019 Oct 23.

Department of Molecular, Cell and Developmental Biology, UC Santa Cruz Genomics Institute, Santa Cruz, California 95064, USA.

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October 2019

Barriers to accessing public cancer genomic data.

Authors:

Katrina Learned Ann Durbin Robert Currie Ellen Towle Kephart Holly C Beale Lauren M Sanders Jacob Pfeil Theodore C Goldstein Sofie R Salama David Haussler Olena Morozova Vaske Isabel M Bjork

Sci Data 2019 06 20;6(1):98. Epub 2019 Jun 20.

UC Santa Cruz, 1156 High Street, Mailstop: Genomics Institute, Santa Cruz, CA, 95064, USA.

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June 2019

Whole genome sequencing in cats, identifies new models for blindness in AIPL1 and somite segmentation in HES7.

Authors:

Leslie A Lyons Erica K Creighton Hasan Alhaddad Holly C Beale Robert A Grahn HyungChul Rah David J Maggs Christopher R Helps Barbara Gandolfi

BMC Genomics 2016 Mar 31;17:265. Epub 2016 Mar 31.

Department of Veterinary Medicine and Surgery, College of Veterinary Medicine, University of Missouri - Columbia, E109 Vet Med Building, 1600 E. Rollins Street, Columbia, MO, 65211, USA.

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March 2016

Derived variants at six genes explain nearly half of size reduction in dog breeds.

Authors:

Maud Rimbault Holly C Beale Jeffrey J Schoenebeck Barbara C Hoopes Jeremy J Allen Paul Kilroy-Glynn Robert K Wayne Nathan B Sutter Elaine A Ostrander

Genome Res 2013 Dec 11;23(12):1985-95. Epub 2013 Sep 11.

Cancer Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA;

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December 2013

Variation of BMP3 contributes to dog breed skull diversity.

Authors:

Jeffrey J Schoenebeck Sarah A Hutchinson Alexandra Byers Holly C Beale Blake Carrington Daniel L Faden Maud Rimbault Brennan Decker Jeffrey M Kidd Raman Sood Adam R Boyko John W Fondon Robert K Wayne Carlos D Bustamante Brian Ciruna Elaine A Ostrander

PLoS Genet 2012 2;8(8):e1002849. Epub 2012 Aug 2.

Cancer Genetics Branch, National Human Genome Research Institute, Bethesda, Maryland, United States of America.

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December 2012

Leading the way: finding genes for neurologic disease in dogs using genome-wide mRNA sequencing.

Authors:

Elaine A Ostrander Holly C Beale

BMC Genet 2012 Jul 10;13:56. Epub 2012 Jul 10.

NHGRI/National Institutes of Health, Bethesda, MD 20892, USA.

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July 2012

Integration of biochemical signalling in spines.

Authors:

Mary B Kennedy Holly C Beale Holly J Carlisle Lorraine R Washburn

Nat Rev Neurosci 2005 Jun;6(6):423-34

Division of Biology 216-76, California Institute of Technology, Pasadena, California 91125, USA.

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June 2005