Publications by authors named "Holden T Maecker"

100Publications

Transcriptional changes in peanut-specific CD4+ T cells over the course of oral immunotherapy.

Clin Immunol 2020 Oct 9;219:108568. Epub 2020 Aug 9.

Institute for Immunity, Transplantation, Infection, Stanford University School of Medicine, Stanford, CA 94305, United States of America. Electronic address:

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http://dx.doi.org/10.1016/j.clim.2020.108568DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7484319PMC
October 2020

Autoantibody-positive healthy individuals with lower lupus risk display a unique immune endotype.

J Allergy Clin Immunol 2020 May 22. Epub 2020 May 22.

Department of Arthritis and Clinical Immunology, Oklahoma Medical Research Foundation, Oklahoma City, Okla; Department of Internal Medicine, University of Oklahoma Health Sciences Center, Oklahoma City, Okla; Department of Pathology, University of Oklahoma Health Sciences Center, Oklahoma City, Okla. Electronic address:

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http://dx.doi.org/10.1016/j.jaci.2020.04.047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7680268PMC
May 2020

A Novel Utility to Correct for Plate/Batch/Lot and Nonspecific Binding Artifacts in Luminex Data.

J Immunol 2020 Jun 6;204(12):3425-3433. Epub 2020 May 6.

Division of Immunology and Rheumatology, Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305.

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http://dx.doi.org/10.4049/jimmunol.2000017DOI Listing
June 2020

Impaired Immune Health in Survivors of Diffuse Large B-Cell Lymphoma.

J Clin Oncol 2020 May 21;38(15):1664-1675. Epub 2020 Feb 21.

Center for Oncology Hematology Outcomes Research and Training (COHORT) and Division of Hematology and Oncology, University of California Davis School of Medicine, Sacramento, CA.

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http://dx.doi.org/10.1200/JCO.19.01937DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7238489PMC
May 2020

The FluPRINT dataset, a multidimensional analysis of the influenza vaccine imprint on the immune system.

Sci Data 2019 10 21;6(1):214. Epub 2019 Oct 21.

Institute of Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, 94304, USA.

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http://dx.doi.org/10.1038/s41597-019-0213-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6803714PMC
October 2019

Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition).

Authors:
Andrea Cossarizza Hyun-Dong Chang Andreas Radbruch Andreas Acs Dieter Adam Sabine Adam-Klages William W Agace Nima Aghaeepour Mübeccel Akdis Matthieu Allez Larissa Nogueira Almeida Giorgia Alvisi Graham Anderson Immanuel Andrä Francesco Annunziato Achille Anselmo Petra Bacher Cosima T Baldari Sudipto Bari Vincenzo Barnaba Joana Barros-Martins Luca Battistini Wolfgang Bauer Sabine Baumgart Nicole Baumgarth Dirk Baumjohann Bianka Baying Mary Bebawy Burkhard Becher Wolfgang Beisker Vladimir Benes Rudi Beyaert Alfonso Blanco Dominic A Boardman Christian Bogdan Jessica G Borger Giovanna Borsellino Philip E Boulais Jolene A Bradford Dirk Brenner Ryan R Brinkman Anna E S Brooks Dirk H Busch Martin Büscher Timothy P Bushnell Federica Calzetti Garth Cameron Ilenia Cammarata Xuetao Cao Susanna L Cardell Stefano Casola Marco A Cassatella Andrea Cavani Antonio Celada Lucienne Chatenoud Pratip K Chattopadhyay Sue Chow Eleni Christakou Luka Čičin-Šain Mario Clerici Federico S Colombo Laura Cook Anne Cooke Andrea M Cooper Alexandra J Corbett Antonio Cosma Lorenzo Cosmi Pierre G Coulie Ana Cumano Ljiljana Cvetkovic Van Duc Dang Chantip Dang-Heine Martin S Davey Derek Davies Sara De Biasi Genny Del Zotto Gelo Victoriano Dela Cruz Michael Delacher Silvia Della Bella Paolo Dellabona Günnur Deniz Mark Dessing James P Di Santo Andreas Diefenbach Francesco Dieli Andreas Dolf Thomas Dörner Regine J Dress Diana Dudziak Michael Dustin Charles-Antoine Dutertre Friederike Ebner Sidonia B G Eckle Matthias Edinger Pascale Eede Götz R A Ehrhardt Marcus Eich Pablo Engel Britta Engelhardt Anna Erdei Charlotte Esser Bart Everts Maximilien Evrard Christine S Falk Todd A Fehniger Mar Felipo-Benavent Helen Ferry Markus Feuerer Andrew Filby Kata Filkor Simon Fillatreau Marie Follo Irmgard Förster John Foster Gemma A Foulds Britta Frehse Paul S Frenette Stefan Frischbutter Wolfgang Fritzsche David W Galbraith Anastasia Gangaev Natalio Garbi Brice Gaudilliere Ricardo T Gazzinelli Jens Geginat Wilhelm Gerner Nicholas A Gherardin Kamran Ghoreschi Lara Gibellini Florent Ginhoux Keisuke Goda Dale I Godfrey Christoph Goettlinger Jose M González-Navajas Carl S Goodyear Andrea Gori Jane L Grogan Daryl Grummitt Andreas Grützkau Claudia Haftmann Jonas Hahn Hamida Hammad Günter Hämmerling Leo Hansmann Goran Hansson Christopher M Harpur Susanne Hartmann Andrea Hauser Anja E Hauser David L Haviland David Hedley Daniela C Hernández Guadalupe Herrera Martin Herrmann Christoph Hess Thomas Höfer Petra Hoffmann Kristin Hogquist Tristan Holland Thomas Höllt Rikard Holmdahl Pleun Hombrink Jessica P Houston Bimba F Hoyer Bo Huang Fang-Ping Huang Johanna E Huber Jochen Huehn Michael Hundemer Christopher A Hunter William Y K Hwang Anna Iannone Florian Ingelfinger Sabine M Ivison Hans-Martin Jäck Peter K Jani Beatriz Jávega Stipan Jonjic Toralf Kaiser Tomas Kalina Thomas Kamradt Stefan H E Kaufmann Baerbel Keller Steven L C Ketelaars Ahad Khalilnezhad Srijit Khan Jan Kisielow Paul Klenerman Jasmin Knopf Hui-Fern Koay Katja Kobow Jay K Kolls Wan Ting Kong Manfred Kopf Thomas Korn Katharina Kriegsmann Hendy Kristyanto Thomas Kroneis Andreas Krueger Jenny Kühne Christian Kukat Désirée Kunkel Heike Kunze-Schumacher Tomohiro Kurosaki Christian Kurts Pia Kvistborg Immanuel Kwok Jonathan Landry Olivier Lantz Paola Lanuti Francesca LaRosa Agnès Lehuen Salomé LeibundGut-Landmann Michael D Leipold Leslie Y T Leung Megan K Levings Andreia C Lino Francesco Liotta Virginia Litwin Yanling Liu Hans-Gustaf Ljunggren Michael Lohoff Giovanna Lombardi Lilly Lopez Miguel López-Botet Amy E Lovett-Racke Erik Lubberts Herve Luche Burkhard Ludewig Enrico Lugli Sebastian Lunemann Holden T Maecker Laura Maggi Orla Maguire Florian Mair Kerstin H Mair Alberto Mantovani Rudolf A Manz Aaron J Marshall Alicia Martínez-Romero Glòria Martrus Ivana Marventano Wlodzimierz Maslinski Giuseppe Matarese Anna Vittoria Mattioli Christian Maueröder Alessio Mazzoni James McCluskey Mairi McGrath Helen M McGuire Iain B McInnes Henrik E Mei Fritz Melchers Susanne Melzer Dirk Mielenz Stephen D Miller Kingston H G Mills Hans Minderman Jenny Mjösberg Jonni Moore Barry Moran Lorenzo Moretta Tim R Mosmann Susann Müller Gabriele Multhoff Luis Enrique Muñoz Christian Münz Toshinori Nakayama Milena Nasi Katrin Neumann Lai Guan Ng Antonia Niedobitek Sussan Nourshargh Gabriel Núñez José-Enrique O'Connor Aaron Ochel Anna Oja Diana Ordonez Alberto Orfao Eva Orlowski-Oliver Wenjun Ouyang Annette Oxenius Raghavendra Palankar Isabel Panse Kovit Pattanapanyasat Malte Paulsen Dinko Pavlinic Livius Penter Pärt Peterson Christian Peth Jordi Petriz Federica Piancone Winfried F Pickl Silvia Piconese Marcello Pinti A Graham Pockley Malgorzata Justyna Podolska Zhiyong Poon Katharina Pracht Immo Prinz Carlo E M Pucillo Sally A Quataert Linda Quatrini Kylie M Quinn Helena Radbruch Tim R D J Radstake Susann Rahmig Hans-Peter Rahn Bartek Rajwa Gevitha Ravichandran Yotam Raz Jonathan A Rebhahn Diether Recktenwald Dorothea Reimer Caetano Reis e Sousa Ester B M Remmerswaal Lisa Richter Laura G Rico Andy Riddell Aja M Rieger J Paul Robinson Chiara Romagnani Anna Rubartelli Jürgen Ruland Armin Saalmüller Yvan Saeys Takashi Saito Shimon Sakaguchi Francisco Sala-de-Oyanguren Yvonne Samstag Sharon Sanderson Inga Sandrock Angela Santoni Ramon Bellmàs Sanz Marina Saresella Catherine Sautes-Fridman Birgit Sawitzki Linda Schadt Alexander Scheffold Hans U Scherer Matthias Schiemann Frank A Schildberg Esther Schimisky Andreas Schlitzer Josephine Schlosser Stephan Schmid Steffen Schmitt Kilian Schober Daniel Schraivogel Wolfgang Schuh Thomas Schüler Reiner Schulte Axel Ronald Schulz Sebastian R Schulz Cristiano Scottá Daniel Scott-Algara David P Sester T Vincent Shankey Bruno Silva-Santos Anna Katharina Simon Katarzyna M Sitnik Silvano Sozzani Daniel E Speiser Josef Spidlen Anders Stahlberg Alan M Stall Natalie Stanley Regina Stark Christina Stehle Tobit Steinmetz Hannes Stockinger Yousuke Takahama Kiyoshi Takeda Leonard Tan Attila Tárnok Gisa Tiegs Gergely Toldi Julia Tornack Elisabetta Traggiai Mohamed Trebak Timothy I M Tree Joe Trotter John Trowsdale Maria Tsoumakidou Henning Ulrich Sophia Urbanczyk Willem van de Veen Maries van den Broek Edwin van der Pol Sofie Van Gassen Gert Van Isterdael René A W van Lier Marc Veldhoen Salvador Vento-Asturias Paulo Vieira David Voehringer Hans-Dieter Volk Anouk von Borstel Konrad von Volkmann Ari Waisman Rachael V Walker Paul K Wallace Sa A Wang Xin M Wang Michael D Ward Kirsten A Ward-Hartstonge Klaus Warnatz Gary Warnes Sarah Warth Claudia Waskow James V Watson Carsten Watzl Leonie Wegener Thomas Weisenburger Annika Wiedemann Jürgen Wienands Anneke Wilharm Robert John Wilkinson Gerald Willimsky James B Wing Rieke Winkelmann Thomas H Winkler Oliver F Wirz Alicia Wong Peter Wurst Jennie H M Yang Juhao Yang Maria Yazdanbakhsh Liping Yu Alice Yue Hanlin Zhang Yi Zhao Susanne Maria Ziegler Christina Zielinski Jakob Zimmermann Arturo Zychlinsky

Eur J Immunol 2019 Oct;49(10):1457-1973

Max Planck Institute for Infection Biology, Berlin, Germany.

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http://dx.doi.org/10.1002/eji.201970107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7350392PMC
October 2019

Guidelines for Gating Flow Cytometry Data for Immunological Assays.

Methods Mol Biol 2019 ;2032:81-104

Institute for Immunity, Transplantation, and Infection, Stanford University School of Medicine, Stanford, CA, USA.

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http://dx.doi.org/10.1007/978-1-4939-9650-6_5DOI Listing
April 2020

High-Parameter Immune Profiling with CyTOF.

Methods Mol Biol 2020 ;2055:351-368

Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.

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http://dx.doi.org/10.1007/978-1-4939-9773-2_16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7232871PMC
November 2020

Comprehensive Immune Monitoring of Clinical Trials to Advance Human Immunotherapy.

Cell Rep 2019 07;28(3):819-831.e4

Department of Pathology, School of Medicine, Stanford University, Palo Alto, CA 94305, USA; Parker Institute for Cancer Immunotherapy, San Francisco, CA 94125, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2019.06.049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6656694PMC
July 2019

SIMON, an Automated Machine Learning System, Reveals Immune Signatures of Influenza Vaccine Responses.

J Immunol 2019 08 14;203(3):749-759. Epub 2019 Jun 14.

Institute of Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA 94304.

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http://dx.doi.org/10.4049/jimmunol.1900033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6643048PMC
August 2019

Getting the Most from Your High-Dimensional Cytometry Data.

Immunity 2019 03;50(3):535-536

Institute for Immunity, Transplantation, and Infection, Stanford University School of Medicine, Stanford, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.immuni.2019.02.015DOI Listing
March 2019

Penalized Supervised Star Plots: Example Application in Influenza-Specific CD4+ T Cells.

Viral Immunol 2019 03 30;32(2):102-109. Epub 2019 Jan 30.

2 Institute for Immunity, Transplantation, and Infection, Stanford University School of Medicine, Stanford, California.

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http://dx.doi.org/10.1089/vim.2018.0046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6442301PMC
March 2019

Mycophenolate mofetil reduces STAT3 phosphorylation in systemic lupus erythematosus patients.

JCI Insight 2019 Jan 24;4(2). Epub 2019 Jan 24.

Department of Arthritis and Clinical Immunology, Oklahoma Medical Research Foundation, Oklahoma City, Oklahoma, USA.

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http://dx.doi.org/10.1172/jci.insight.124575DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6413783PMC
January 2019

Interleukin 4 is inactivated via selective disulfide-bond reduction by extracellular thioredoxin.

Proc Natl Acad Sci U S A 2018 08 13;115(35):8781-8786. Epub 2018 Aug 13.

Department of Chemistry, Stanford University, Stanford, CA 94305;

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http://dx.doi.org/10.1073/pnas.1805288115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6126747PMC
August 2018

Reply to Roerink et al: Methods for recruitment, serum separation, and storage were the same for patients and controls.

Proc Natl Acad Sci U S A 2017 11 30;114(45):E9436. Epub 2017 Oct 30.

Institute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA 94305;

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http://dx.doi.org/10.1073/pnas.1714692114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5692597PMC
November 2017

Multiparameter Intracellular Cytokine Staining.

Methods Mol Biol 2018 ;1678:151-166

Human Immune Monitoring Center, Institute for Immunity, Transplantation, and Infection, Stanford University, Fairchild Science Building, 299 Campus Drive, Stanford, CA, 94305-5124, USA.

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http://dx.doi.org/10.1007/978-1-4939-7346-0_9DOI Listing
June 2018

Mass Cytometry Assays for Antigen-Specific T Cells Using CyTOF.

Methods Mol Biol 2018 ;1678:37-47

Human Immune Monitoring Center, Institute for Immunity, Transplantation, and Infection, Stanford University School of Medicine, Fairchild Science Building, 299 Campus Drive, Stanford, CA, 94305-5124, USA.

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http://dx.doi.org/10.1007/978-1-4939-7346-0_3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5798871PMC
June 2018

Guidelines for the use of flow cytometry and cell sorting in immunological studies.

Authors:
Andrea Cossarizza Hyun-Dong Chang Andreas Radbruch Mübeccel Akdis Immanuel Andrä Francesco Annunziato Petra Bacher Vincenzo Barnaba Luca Battistini Wolfgang M Bauer Sabine Baumgart Burkhard Becher Wolfgang Beisker Claudia Berek Alfonso Blanco Giovanna Borsellino Philip E Boulais Ryan R Brinkman Martin Büscher Dirk H Busch Timothy P Bushnell Xuetao Cao Andrea Cavani Pratip K Chattopadhyay Qingyu Cheng Sue Chow Mario Clerici Anne Cooke Antonio Cosma Lorenzo Cosmi Ana Cumano Van Duc Dang Derek Davies Sara De Biasi Genny Del Zotto Silvia Della Bella Paolo Dellabona Günnur Deniz Mark Dessing Andreas Diefenbach James Di Santo Francesco Dieli Andreas Dolf Vera S Donnenberg Thomas Dörner Götz R A Ehrhardt Elmar Endl Pablo Engel Britta Engelhardt Charlotte Esser Bart Everts Anita Dreher Christine S Falk Todd A Fehniger Andrew Filby Simon Fillatreau Marie Follo Irmgard Förster John Foster Gemma A Foulds Paul S Frenette David Galbraith Natalio Garbi Maria Dolores García-Godoy Jens Geginat Kamran Ghoreschi Lara Gibellini Christoph Goettlinger Carl S Goodyear Andrea Gori Jane Grogan Mor Gross Andreas Grützkau Daryl Grummitt Jonas Hahn Quirin Hammer Anja E Hauser David L Haviland David Hedley Guadalupe Herrera Martin Herrmann Falk Hiepe Tristan Holland Pleun Hombrink Jessica P Houston Bimba F Hoyer Bo Huang Christopher A Hunter Anna Iannone Hans-Martin Jäck Beatriz Jávega Stipan Jonjic Kerstin Juelke Steffen Jung Toralf Kaiser Tomas Kalina Baerbel Keller Srijit Khan Deborah Kienhöfer Thomas Kroneis Désirée Kunkel Christian Kurts Pia Kvistborg Joanne Lannigan Olivier Lantz Anis Larbi Salome LeibundGut-Landmann Michael D Leipold Megan K Levings Virginia Litwin Yanling Liu Michael Lohoff Giovanna Lombardi Lilly Lopez Amy Lovett-Racke Erik Lubberts Burkhard Ludewig Enrico Lugli Holden T Maecker Glòria Martrus Giuseppe Matarese Christian Maueröder Mairi McGrath Iain McInnes Henrik E Mei Fritz Melchers Susanne Melzer Dirk Mielenz Kingston Mills David Mirrer Jenny Mjösberg Jonni Moore Barry Moran Alessandro Moretta Lorenzo Moretta Tim R Mosmann Susann Müller Werner Müller Christian Münz Gabriele Multhoff Luis Enrique Munoz Kenneth M Murphy Toshinori Nakayama Milena Nasi Christine Neudörfl John Nolan Sussan Nourshargh José-Enrique O'Connor Wenjun Ouyang Annette Oxenius Raghav Palankar Isabel Panse Pärt Peterson Christian Peth Jordi Petriz Daisy Philips Winfried Pickl Silvia Piconese Marcello Pinti A Graham Pockley Malgorzata Justyna Podolska Carlo Pucillo Sally A Quataert Timothy R D J Radstake Bartek Rajwa Jonathan A Rebhahn Diether Recktenwald Ester B M Remmerswaal Katy Rezvani Laura G Rico J Paul Robinson Chiara Romagnani Anna Rubartelli Beate Ruckert Jürgen Ruland Shimon Sakaguchi Francisco Sala-de-Oyanguren Yvonne Samstag Sharon Sanderson Birgit Sawitzki Alexander Scheffold Matthias Schiemann Frank Schildberg Esther Schimisky Stephan A Schmid Steffen Schmitt Kilian Schober Thomas Schüler Axel Ronald Schulz Ton Schumacher Cristiano Scotta T Vincent Shankey Anat Shemer Anna-Katharina Simon Josef Spidlen Alan M Stall Regina Stark Christina Stehle Merle Stein Tobit Steinmetz Hannes Stockinger Yousuke Takahama Attila Tarnok ZhiGang Tian Gergely Toldi Julia Tornack Elisabetta Traggiai Joe Trotter Henning Ulrich Marlous van der Braber René A W van Lier Marc Veldhoen Salvador Vento-Asturias Paulo Vieira David Voehringer Hans-Dieter Volk Konrad von Volkmann Ari Waisman Rachael Walker Michael D Ward Klaus Warnatz Sarah Warth James V Watson Carsten Watzl Leonie Wegener Annika Wiedemann Jürgen Wienands Gerald Willimsky James Wing Peter Wurst Liping Yu Alice Yue Qianjun Zhang Yi Zhao Susanne Ziegler Jakob Zimmermann

Eur J Immunol 2017 10;47(10):1584-1797

Maurice Müller Laboratories (DKF), Universitätsklinik für Viszerale Chirurgie und Medizin Inselspital, University of Bern, Murtenstrasse, Bern.

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http://doi.wiley.com/10.1002/eji.201646632
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http://dx.doi.org/10.1002/eji.201646632DOI Listing
October 2017

CyTOF Measurement of Immunocompetence Across Major Immune Cell Types.

Curr Protoc Cytom 2017 Oct 2;82:9.54.1-9.54.12. Epub 2017 Oct 2.

Professor, Department of Microbiology & Immunology, Stanford University School of Medicine, Stanford, California.

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http://doi.wiley.com/10.1002/cpcy.27
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http://dx.doi.org/10.1002/cpcy.27DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5678938PMC
October 2017

Cytokine signature associated with disease severity in chronic fatigue syndrome patients.

Proc Natl Acad Sci U S A 2017 08 31;114(34):E7150-E7158. Epub 2017 Jul 31.

Institute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA 94305;

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http://dx.doi.org/10.1073/pnas.1710519114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5576836PMC
August 2017

Systems approach to uncover signaling networks in primary immunodeficiency diseases.

J Allergy Clin Immunol 2017 09 13;140(3):881-884.e8. Epub 2017 Apr 13.

Department of Pediatrics, Division of Immunology, Allergy, and Rheumatology, University of California, Los Angeles, Calif. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00916749173058
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http://dx.doi.org/10.1016/j.jaci.2017.03.025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5591762PMC
September 2017

Opening the Door on the CMV Immune Response in Aging.

Authors:
Holden T Maecker

J Infect Dis 2017 04;215(8):1179-1180

Department of Microbiology and Immunology, Stanford University School of Medicine, California.

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http://dx.doi.org/10.1093/infdis/jix081DOI Listing
April 2017

Defective Signaling in the JAK-STAT Pathway Tracks with Chronic Inflammation and Cardiovascular Risk in Aging Humans.

Cell Syst 2016 10 13;3(4):374-384.e4. Epub 2016 Oct 13.

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA; Institute of Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA 94305, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA. Electronic address:

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http://www.cell.com/cell-systems/pdf/S2405-4712(16)30299-X.p
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http://dx.doi.org/10.1016/j.cels.2016.09.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5358544PMC
October 2016

A Prospective Clinical Trial Combining Radiation Therapy With Systemic Immunotherapy in Metastatic Melanoma.

Int J Radiat Oncol Biol Phys 2016 11 15;96(3):578-88. Epub 2016 Jul 15.

Department of Radiation Oncology, Stanford University Medical Center and Cancer Institute, Stanford, California.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5077166PMC
http://dx.doi.org/10.1016/j.ijrobp.2016.07.005DOI Listing
November 2016

Assessing basophil activation by using flow cytometry and mass cytometry in blood stored 24 hours before analysis.

J Allergy Clin Immunol 2017 Mar 15;139(3):889-899.e11. Epub 2016 Jul 15.

Department of Pathology, Stanford University School of Medicine, Stanford, Calif; Sean N. Parker Center for Allergy and Asthma Research, Stanford University School of Medicine, Stanford, Calif; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, Calif. Electronic address:

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http://dx.doi.org/10.1016/j.jaci.2016.04.060DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5237629PMC
March 2017

Wild immunology assessed by multidimensional mass cytometry.

Cytometry A 2017 01 12;91(1):85-95. Epub 2016 Jul 12.

Regenerative Immunology and Aging, BCRT, Charité Universitätsmedizin Berlin, Berlin, Germany.

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http://dx.doi.org/10.1002/cyto.a.22906DOI Listing
January 2017

Immune Profiles to Predict Response to Desensitization Therapy in Highly HLA-Sensitized Kidney Transplant Candidates.

PLoS One 2016 14;11(4):e0153355. Epub 2016 Apr 14.

Institute for Immunity, Transplantation, and Infection, Stanford University School of Medicine, Palo Alto, CA, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0153355PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4831845PMC
August 2016

Successful immunotherapy induces previously unidentified allergen-specific CD4+ T-cell subsets.

Proc Natl Acad Sci U S A 2016 Mar 25;113(9):E1286-95. Epub 2016 Jan 25.

Sean N. Parker Center for Allergy and Asthma Research at Stanford University, Pulmonary and Critical Care Medicine, Institute of Immunity, Transplantation, and Infectious Diseases, Stanford University, Stanford, CA 94305;

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http://dx.doi.org/10.1073/pnas.1520180113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4780622PMC
March 2016

Predictors of clinical response to immunotherapy with or without radiotherapy.

J Radiat Oncol 2015;4:339-345. Epub 2015 Sep 19.

Department of Radiation Oncology, Stanford Cancer Center, Stanford University, 875 Blake Wilbur Drive, Stanford, CA 94305-5847 USA.

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http://dx.doi.org/10.1007/s13566-015-0219-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4685037PMC
September 2015

Multiparameter Phenotyping of Human PBMCs Using Mass Cytometry.

Methods Mol Biol 2015 ;1343:81-95

Institute for Immunity, Transplantation, and Infection, Department of Microbiology and Immunology, Stanford University, Stanford, CA, 94305, USA.

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http://link.springer.com/10.1007/978-1-4939-2963-4_7
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http://dx.doi.org/10.1007/978-1-4939-2963-4_7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4748856PMC
June 2016

Immune monitoring technology primer: flow and mass cytometry.

J Immunother Cancer 2015 15;3:44. Epub 2015 Sep 15.

Centre Hospitalier Universitaire Vaudois (CHUV), Epalinges, Switzerland.

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http://www.immunotherapyofcancer.org/content/3/1/44
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http://dx.doi.org/10.1186/s40425-015-0085-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4570613PMC
September 2015

Platinum-conjugated antibodies for application in mass cytometry.

Cytometry A 2016 Mar 10;89(3):292-300. Epub 2015 Sep 10.

The Human Immune Monitoring Center (HIMC), Institute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, California, 94305.

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http://dx.doi.org/10.1002/cyto.a.22778DOI Listing
March 2016

Large-Scale and Comprehensive Immune Profiling and Functional Analysis of Normal Human Aging.

PLoS One 2015 21;10(7):e0133627. Epub 2015 Jul 21.

Institute for Immunity, Transplantation, and Infection, Stanford School of Medicine, Stanford University, Stanford, CA, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0133627PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4509650PMC
May 2016

Algorithmic Tools for Mining High-Dimensional Cytometry Data.

J Immunol 2015 Aug;195(3):773-9

The Human Immune Monitoring Center, Institute for Immunity, Transplantation, and Infection, Stanford University School of Medicine, Stanford, CA 94305; and

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http://dx.doi.org/10.4049/jimmunol.1500633DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4507289PMC
August 2015

Mass cytometry as a platform for the discovery of cellular biomarkers to guide effective rheumatic disease therapy.

Arthritis Res Ther 2015 May 18;17:127. Epub 2015 May 18.

Division of Immune Monitoring and Biomarker Development, Aduro BioTech, Inc., Berkeley, CA, 94710, USA.

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http://dx.doi.org/10.1186/s13075-015-0644-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4436107PMC
May 2015

Cytomegalovirus infection enhances the immune response to influenza.

Sci Transl Med 2015 Apr;7(281):281ra43

Department of Microbiology and Immunology, School of Medicine, Stanford University, Stanford, CA 94305, USA. Institute for Immunity, Transplantation and Infection, School of Medicine, Stanford University, Stanford, CA 94305, USA. The Howard Hughes Medical Institute.

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http://dx.doi.org/10.1126/scitranslmed.aaa2293DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4505610PMC
April 2015

Barcoding of live human peripheral blood mononuclear cells for multiplexed mass cytometry.

J Immunol 2015 Feb 21;194(4):2022-31. Epub 2015 Jan 21.

Human Immune Monitoring Center, Institute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA 94305; and.

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http://www.jimmunol.org/content/194/4/2022.full.pdf
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http://www.jimmunol.org/cgi/doi/10.4049/jimmunol.1402661
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http://dx.doi.org/10.4049/jimmunol.1402661DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4323739PMC
February 2015

Variation in the human immune system is largely driven by non-heritable influences.

Cell 2015 Jan;160(1-2):37-47

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94304, USA; Institute of Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA 94304, USA; Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA 94304, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00928674140159
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http://dx.doi.org/10.1016/j.cell.2014.12.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4302727PMC
January 2015

Intracellular Cytokine Staining on PBMCs Using CyTOF™ Mass Cytometry.

Bio Protoc 2015 Jan;5(1)

Department of Microbiology and Immunology, Transplantation, and Infection, Stanford University, Stanford, USA.

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http://dx.doi.org/10.21769/BioProtoc.1370DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5669382PMC
January 2015

Phenotyping of Live Human PBMC using CyTOF™ Mass Cytometry.

Bio Protoc 2015;5(2). Epub 2015 Jan 20.

Human Immune Monitoring Center, Stanford University, Stanford, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4933512PMC
http://dx.doi.org/10.21769/bioprotoc.1382DOI Listing
January 2015

flowCL: ontology-based cell population labelling in flow cytometry.

Bioinformatics 2015 Apr 6;31(8):1337-9. Epub 2014 Dec 6.

Molecular Biology and Biochemistry Department, Simon Fraser University, Burnaby, BC V5A 1S6, Canada, Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC V5Z 1L3, Canada, Department of Neurology, University at Buffalo School of Medicine and Biomedical Sciences, Buffalo, NY 14203, USA, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA, Institute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA 94305, USA, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD 20892, USA, Center for Human Immunology, Autoimmunity and Inflammation, National Institutes of Health, Bethesda, MD 20892, USA, School of Dental Medicine, University at Buffalo, NY 14214-8006, USA, J. Craig Venter Institute, La Jolla, CA 92037, USA, Department of Pathology, University of California, San Diego, CA 92093, USA.

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http://bioinformatics.oxfordjournals.org/content/early/2015/
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http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bio
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http://dx.doi.org/10.1093/bioinformatics/btu807DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4393520PMC
April 2015

The Split Virus Influenza Vaccine rapidly activates immune cells through Fcγ receptors.

Vaccine 2014 Oct 6;32(45):5989-97. Epub 2014 Sep 6.

The Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305, United States; Institute for Immunity, Transplantation, and Infection, Stanford University, Stanford, CA 94305, United States; Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, United States. Electronic address:

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http://dx.doi.org/10.1016/j.vaccine.2014.07.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4191649PMC
October 2014

Vitamin d deficiency in a multiethnic healthy control cohort and altered immune response in vitamin D deficient European-American healthy controls.

PLoS One 2014 11;9(4):e94500. Epub 2014 Apr 11.

Arthritis and Clinical Immunology, Oklahoma Medical Research Foundation, Oklahoma City, Oklahoma, United States of America; Departments of Medicine and Pathology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0094500PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3984168PMC
January 2015

Effects of serum and plasma matrices on multiplex immunoassays.

Immunol Res 2014 May;58(2-3):224-33

Institute for Immunity, Transplantation, and Infection, Stanford University School of Medicine, Stanford, CA, 94305, USA.

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http://link.springer.com/10.1007/s12026-014-8491-6
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http://dx.doi.org/10.1007/s12026-014-8491-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4332596PMC
May 2014

Monitoring the immune competence of cancer patients to predict outcome.

Cancer Immunol Immunother 2014 Jul 1;63(7):713-9. Epub 2014 Feb 1.

Institute for Immunity, Transplantation, and Infection, Stanford University School of Medicine, Fairchild Science Building, 299 Campus Drive, Stanford, CA, 94305-5124, USA.

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http://link.springer.com/10.1007/s00262-014-1521-3
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http://dx.doi.org/10.1007/s00262-014-1521-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4058358PMC
July 2014

Influence of frequent infectious exposures on general and varicella-zoster virus-specific immune responses in pediatricians.

Clin Vaccine Immunol 2014 Mar 15;21(3):417-26. Epub 2014 Jan 15.

Centre for Health Economics Research and Modeling Infectious Diseases (CHERMID), Vaccine and Infectious Disease Institute (VAXINFECTIO), University of Antwerp, Antwerp, Belgium.

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http://dx.doi.org/10.1128/CVI.00818-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3957663PMC
March 2014

Experimental pain and opioid analgesia in volunteers at high risk for obstructive sleep apnea.

PLoS One 2013 29;8(1):e54807. Epub 2013 Jan 29.

Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Stanford, California, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3558510PMC
August 2013

Mass cytometry: protocol for daily tuning and running cell samples on a CyTOF mass cytometer.

J Vis Exp 2012 Nov 2(69):e4398. Epub 2012 Nov 2.

Human Immune Monitoring Center, Institute for Immunity, Transplantation, and Infection, Stanford University, USA.

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http://dx.doi.org/10.3791/4398DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3499083PMC
November 2012

New tools for classification and monitoring of autoimmune diseases.

Nat Rev Rheumatol 2012 May 31;8(6):317-28. Epub 2012 May 31.

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1038/nrrheum.2012.66DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3409841PMC
May 2012

Standardizing immunophenotyping for the Human Immunology Project.

Nat Rev Immunol 2012 Feb 17;12(3):191-200. Epub 2012 Feb 17.

Institute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, California 94305, USA.

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http://dx.doi.org/10.1038/nri3158DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3409649PMC
February 2012

Multiparameter intracellular cytokine staining.

Methods Mol Biol 2011 ;699:165-78

Institute for Immunity, Transplantation, and Infection, Stanford University, Stanford, CA, USA.

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http://dx.doi.org/10.1007/978-1-61737-950-5_8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4219546PMC
May 2011

New technologies for autoimmune disease monitoring.

Curr Opin Endocrinol Diabetes Obes 2010 Aug;17(4):322-8

Institute for Immunity, Transplantation, and Infection Operations, USA.

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http://dx.doi.org/10.1097/MED.0b013e32833ada91DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4311749PMC
August 2010

Standardization and optimization of multiparameter intracellular cytokine staining.

Cytometry A 2008 Nov;73(11):984-91

BD Biosciences, 2350 Qume Dr., San Jose, California 95131, USA.

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http://dx.doi.org/10.1002/cyto.a.20602DOI Listing
November 2008

Development and dynamics of robust T-cell responses to CML under imatinib treatment.

Blood 2008 Jun 7;111(11):5342-9. Epub 2008 Mar 7.

Department of Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://www.bloodjournal.org/cgi/doi/10.1182/blood-2007-12-12
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http://dx.doi.org/10.1182/blood-2007-12-128397DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2396727PMC
June 2008

An analytical workflow for investigating cytokine profiles.

Cytometry A 2008 Apr;73(4):289-98

CytoAnalytics, Analytical Services, Denver, Colorado 80209, USA.

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http://dx.doi.org/10.1002/cyto.a.20509DOI Listing
April 2008

Flow cytometry controls, instrument setup, and the determination of positivity.

Cytometry A 2006 Sep;69(9):1037-42

BD Biosciences, San Jose, CA 95131, USA.

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http://dx.doi.org/10.1002/cyto.a.20333DOI Listing
September 2006

Immune responses in the draining lymph nodes against cancer: implications for immunotherapy.

Cancer Metastasis Rev 2006 Jun;25(2):233-42

Center for Surgery Research, The Cleveland Clinic Foundation, Cleveland, OH, USA.

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http://dx.doi.org/10.1007/s10555-006-8503-7DOI Listing
June 2006

Maximizing the retention of antigen specific lymphocyte function after cryopreservation.

J Immunol Methods 2006 Jan 21;308(1-2):13-8. Epub 2005 Oct 21.

Tumor Vaccine Group, Center for Translational Medicine in Women's Health, 815 Mercer Street, 2nd Floor, Box 358050, University of Washington, Seattle, WA 98195-8050, USA.

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http://dx.doi.org/10.1016/j.jim.2005.09.011DOI Listing
January 2006

Ex vivo analysis of T-cell function.

Curr Opin Immunol 2005 Aug;17(4):434-40

Becton, Dickinson and Company Biosciences, 2350 Qume Drive, San Jose, California 95131, USA.

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http://dx.doi.org/10.1016/j.coi.2005.05.002DOI Listing
August 2005

Immune dysfunction and micrometastases in women with breast cancer.

Breast Cancer Res Treat 2005 May;91(2):163-71

Department of Surgery, University of California, San Francisco, CA 94115, USA.

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http://dx.doi.org/10.1007/s10549-004-7048-0DOI Listing
May 2005

Multicolor flow cytometric analysis in SIV-infected rhesus macaque.

Methods Cell Biol 2004 ;75:535-57

Vaccine and Gene Therapy Institute, Oregon National Primate Research Center, Oregon Health and Science University, West Campus Beaverton, Oregon 97006, USA.

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http://dx.doi.org/10.1016/s0091-679x(04)75022-0DOI Listing
March 2005

Selecting fluorochrome conjugates for maximum sensitivity.

Cytometry A 2004 Dec;62(2):169-73

BD Biosciences, San Jose, California 95131, USA.

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http://dx.doi.org/10.1002/cyto.a.20092DOI Listing
December 2004

Analyzing T-cell responses to cytomegalovirus by cytokine flow cytometry.

Hum Immunol 2004 May;65(5):493-9

BD Biosciences, San Jose, California 95131, USA.

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http://dx.doi.org/10.1016/j.humimm.2004.02.004DOI Listing
May 2004