Publications by authors named "Hiroyuki Kanamori"

97Publications

Multiple wheat genomes reveal global variation in modern breeding.

Authors:
Sean Walkowiak Liangliang Gao Cecile Monat Georg Haberer Mulualem T Kassa Jemima Brinton Ricardo H Ramirez-Gonzalez Markus C Kolodziej Emily Delorean Dinushika Thambugala Valentyna Klymiuk Brook Byrns Heidrun Gundlach Venkat Bandi Jorge Nunez Siri Kirby Nilsen Catharine Aquino Axel Himmelbach Dario Copetti Tomohiro Ban Luca Venturini Michael Bevan Bernardo Clavijo Dal-Hoe Koo Jennifer Ens Krystalee Wiebe Amidou N'Diaye Allen K Fritz Carl Gutwin Anne Fiebig Christine Fosker Bin Xiao Fu Gonzalo Garcia Accinelli Keith A Gardner Nick Fradgley Juan Gutierrez-Gonzalez Gwyneth Halstead-Nussloch Masaomi Hatakeyama Chu Shin Koh Jasline Deek Alejandro C Costamagna Pierre Fobert Darren Heavens Hiroyuki Kanamori Kanako Kawaura Fuminori Kobayashi Ksenia Krasileva Tony Kuo Neil McKenzie Kazuki Murata Yusuke Nabeka Timothy Paape Sudharsan Padmarasu Lawrence Percival-Alwyn Sateesh Kagale Uwe Scholz Jun Sese Philomin Juliana Ravi Singh Rie Shimizu-Inatsugi David Swarbreck James Cockram Hikmet Budak Toshiaki Tameshige Tsuyoshi Tanaka Hiroyuki Tsuji Jonathan Wright Jianzhong Wu Burkhard Steuernagel Ian Small Sylvie Cloutier Gabriel Keeble-Gagnère Gary Muehlbauer Josquin Tibbets Shuhei Nasuda Joanna Melonek Pierre J Hucl Andrew G Sharpe Matthew Clark Erik Legg Arvind Bharti Peter Langridge Anthony Hall Cristobal Uauy Martin Mascher Simon G Krattinger Hirokazu Handa Kentaro K Shimizu Assaf Distelfeld Ken Chalmers Beat Keller Klaus F X Mayer Jesse Poland Nils Stein Curt A McCartney Manuel Spannagl Thomas Wicker Curtis J Pozniak

Nature 2020 Nov 25. Epub 2020 Nov 25.

Crop Development Centre, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.

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http://dx.doi.org/10.1038/s41586-020-2961-xDOI Listing
November 2020

Evolutionary dynamics and impacts of chromosome regions carrying R-gene clusters in rice.

Sci Rep 2020 01 21;10(1):872. Epub 2020 Jan 21.

Institute of Crop Science (NICS), National Agriculture and Food Research Organization, 1-2, Ohwashi, Tsukuba, Ibaraki, 305-8634, Japan.

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http://dx.doi.org/10.1038/s41598-020-57729-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6972905PMC
January 2020

Metagenomic profiles of the rumen microbiota during the transition period in low-yield and high-yield dairy cows.

Anim Sci J 2019 Oct 13;90(10):1362-1376. Epub 2019 Aug 13.

Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan.

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http://dx.doi.org/10.1111/asj.13277DOI Listing
October 2019

Scanning RNA-Seq and RAD-Seq approach to develop SNP markers closely linked to () in D. Don.

Breed Sci 2019 Mar 15;69(1):19-29. Epub 2019 Feb 15.

Department of Forest Molecular Genetics and Biotechnology, Forestry and Forest Products Research Institute, Forest Research and Management Organization, 1 Matsunosato, Tsukuba, Ibaraki 305-8687, Japan.

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http://dx.doi.org/10.1270/jsbbs.17149DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6507728PMC
March 2019

Identification of candidate genes responsible for the susceptibility of apple (Malus × domestica Borkh.) to Alternaria blotch.

BMC Plant Biol 2019 Apr 8;19(1):132. Epub 2019 Apr 8.

Apple Research Station, Institute of Fruit Tree and Tea Science, National Agriculture and Food Research Organization (NARO), 92-24 Shimokuriyagawa Nabeyashiki, Morioka, Iwate, 020-0123, Japan.

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https://bmcplantbiol.biomedcentral.com/articles/10.1186/s128
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http://dx.doi.org/10.1186/s12870-019-1737-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6454750PMC
April 2019

Shifting the limits in wheat research and breeding using a fully annotated reference genome.

Authors:
Rudi Appels Kellye Eversole Catherine Feuillet Beat Keller Jane Rogers Nils Stein Curtis J Pozniak Nils Stein Frédéric Choulet Assaf Distelfeld Kellye Eversole Jesse Poland Jane Rogers Gil Ronen Andrew G Sharpe Curtis Pozniak Gil Ronen Nils Stein Omer Barad Kobi Baruch Frédéric Choulet Gabriel Keeble-Gagnère Martin Mascher Andrew G Sharpe Gil Ben-Zvi Ambre-Aurore Josselin Nils Stein Martin Mascher Axel Himmelbach Frédéric Choulet Gabriel Keeble-Gagnère Martin Mascher Jane Rogers François Balfourier Juan Gutierrez-Gonzalez Matthew Hayden Ambre-Aurore Josselin ChuShin Koh Gary Muehlbauer Raj K Pasam Etienne Paux Curtis J Pozniak Philippe Rigault Andrew G Sharpe Josquin Tibbits Vijay Tiwari Frédéric Choulet Gabriel Keeble-Gagnère Martin Mascher Ambre-Aurore Josselin Jane Rogers Manuel Spannagl Frédéric Choulet Daniel Lang Heidrun Gundlach Georg Haberer Gabriel Keeble-Gagnère Klaus F X Mayer Danara Ormanbekova Etienne Paux Verena Prade Hana Šimková Thomas Wicker Frédéric Choulet Manuel Spannagl David Swarbreck Hélène Rimbert Marius Felder Nicolas Guilhot Heidrun Gundlach Georg Haberer Gemy Kaithakottil Jens Keilwagen Daniel Lang Philippe Leroy Thomas Lux Klaus F X Mayer Sven Twardziok Luca Venturini Rudi Appels Hélène Rimbert Frédéric Choulet Angéla Juhász Gabriel Keeble-Gagnère Frédéric Choulet Manuel Spannagl Daniel Lang Michael Abrouk Georg Haberer Gabriel Keeble-Gagnère Klaus F X Mayer Thomas Wicker Frédéric Choulet Thomas Wicker Heidrun Gundlach Daniel Lang Manuel Spannagl Daniel Lang Manuel Spannagl Rudi Appels Iris Fischer Cristobal Uauy Philippa Borrill Ricardo H Ramirez-Gonzalez Rudi Appels Dominique Arnaud Smahane Chalabi Boulos Chalhoub Frédéric Choulet Aron Cory Raju Datla Mark W Davey Matthew Hayden John Jacobs Daniel Lang Stephen J Robinson Manuel Spannagl Burkhard Steuernagel Josquin Tibbits Vijay Tiwari Fred van Ex Brande B H Wulff Curtis J Pozniak Stephen J Robinson Andrew G Sharpe Aron Cory Moussa Benhamed Etienne Paux Abdelhafid Bendahmane Lorenzo Concia David Latrasse Jane Rogers John Jacobs Michael Alaux Rudi Appels Jan Bartoš Arnaud Bellec Hélène Berges Jaroslav Doležel Catherine Feuillet Zeev Frenkel Bikram Gill Abraham Korol Thomas Letellier Odd-Arne Olsen Hana Šimková Kuldeep Singh Miroslav Valárik Edwin van der Vossen Sonia Vautrin Song Weining Abraham Korol Zeev Frenkel Tzion Fahima Vladimir Glikson Dina Raats Jane Rogers Vijay Tiwari Bikram Gill Etienne Paux Jesse Poland Jaroslav Doležel Jarmila Číhalíková Hana Šimková Helena Toegelová Jan Vrána Pierre Sourdille Benoit Darrier Rudi Appels Manuel Spannagl Daniel Lang Iris Fischer Danara Ormanbekova Verena Prade Delfina Barabaschi Luigi Cattivelli Pilar Hernandez Sergio Galvez Hikmet Budak Burkhard Steuernagel Jonathan D G Jones Kamil Witek Brande B H Wulff Guotai Yu Ian Small Joanna Melonek Ruonan Zhou Angéla Juhász Tatiana Belova Rudi Appels Odd-Arne Olsen Kostya Kanyuka Robert King Kirby Nilsen Sean Walkowiak Curtis J Pozniak Richard Cuthbert Raju Datla Ron Knox Krysta Wiebe Daoquan Xiang Antje Rohde Timothy Golds Jaroslav Doležel Jana Čížková Josquin Tibbits Hikmet Budak Bala Ani Akpinar Sezgi Biyiklioglu Gary Muehlbauer Jesse Poland Liangliang Gao Juan Gutierrez-Gonzalez Amidou N'Daiye Jaroslav Doležel Hana Šimková Jarmila Číhalíková Marie Kubaláková Jan Šafář Jan Vrána Hélène Berges Arnaud Bellec Sonia Vautrin Michael Alaux Françoise Alfama Anne-Françoise Adam-Blondon Raphael Flores Claire Guerche Thomas Letellier Mikaël Loaec Hadi Quesneville Curtis J Pozniak Andrew G Sharpe Sean Walkowiak Hikmet Budak Janet Condie Jennifer Ens ChuShin Koh Ron Maclachlan Yifang Tan Thomas Wicker Frédéric Choulet Etienne Paux Adriana Alberti Jean-Marc Aury François Balfourier Valérie Barbe Arnaud Couloux Corinne Cruaud Karine Labadie Sophie Mangenot Patrick Wincker Bikram Gill Gaganpreet Kaur Mingcheng Luo Sunish Sehgal Kuldeep Singh Parveen Chhuneja Om Prakash Gupta Suruchi Jindal Parampreet Kaur Palvi Malik Priti Sharma Bharat Yadav Nagendra K Singh JitendraP Khurana Chanderkant Chaudhary Paramjit Khurana Vinod Kumar Ajay Mahato Saloni Mathur Amitha Sevanthi Naveen Sharma Ram Sewak Tomar Jane Rogers John Jacobs Michael Alaux Arnaud Bellec Hélène Berges Jaroslav Doležel Catherine Feuillet Zeev Frenkel Bikram Gill Abraham Korol Edwin van der Vossen Sonia Vautrin Bikram Gill Gaganpreet Kaur Mingcheng Luo Sunish Sehgal Jan Bartoš Kateřina Holušová Ondřej Plíhal Matthew D Clark Darren Heavens George Kettleborough Jon Wright Miroslav Valárik Michael Abrouk Barbora Balcárková Kateřina Holušová Yuqin Hu Mingcheng Luo Elena Salina Nikolai Ravin Konstantin Skryabin Alexey Beletsky Vitaly Kadnikov Andrey Mardanov Michail Nesterov Andrey Rakitin Ekaterina Sergeeva Hirokazu Handa Hiroyuki Kanamori Satoshi Katagiri Fuminori Kobayashi Shuhei Nasuda Tsuyoshi Tanaka Jianzhong Wu Rudi Appels Matthew Hayden Gabriel Keeble-Gagnère Philippe Rigault Josquin Tibbits Odd-Arne Olsen Tatiana Belova Federica Cattonaro Min Jiumeng Karl Kugler Klaus F X Mayer Matthias Pfeifer Simen Sandve Xu Xun Bujie Zhan Hana Šimková Michael Abrouk Jacqueline Batley Philipp E Bayer David Edwards Satomi Hayashi Helena Toegelová Zuzana Tulpová Paul Visendi Song Weining Licao Cui Xianghong Du Kewei Feng Xiaojun Nie Wei Tong Le Wang Philippa Borrill Heidrun Gundlach Sergio Galvez Gemy Kaithakottil Daniel Lang Thomas Lux Martin Mascher Danara Ormanbekova Verena Prade Ricardo H Ramirez-Gonzalez Manuel Spannagl Nils Stein Cristobal Uauy Luca Venturini Nils Stein Rudi Appels Kellye Eversole Jane Rogers Philippa Borrill Luigi Cattivelli Frédéric Choulet Pilar Hernandez Kostya Kanyuka Daniel Lang Martin Mascher Kirby Nilsen Etienne Paux Curtis J Pozniak Ricardo H Ramirez-Gonzalez Hana Šimková Ian Small Manuel Spannagl David Swarbreck Cristobal Uauy

Science 2018 08 16;361(6403). Epub 2018 Aug 16.

John Innes Centre, Crop Genetics, Norwich Research Park, Norwich NR4 7UH, UK.

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http://dx.doi.org/10.1126/science.aar7191DOI Listing
August 2018

Correction to: Generation of expressed sequence tags for discovery of genes responsible for floral traits of Chrysanthemum morifolium by next-generation sequencing technology.

BMC Genomics 2017 12 7;18(1):954. Epub 2017 Dec 7.

Institute of Vegetable and Floriculture Science, National Agriculture and Food Research Organization (NARO), 2-1 Fujimoto, Tsukuba, Ibaraki, 305-0852, Japan.

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http://dx.doi.org/10.1186/s12864-017-4206-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5719747PMC
December 2017

Genome-wide analysis of rice cis-natural antisense transcription under cadmium exposure using strand-specific RNA-Seq.

BMC Genomics 2017 Oct 6;18(1):761. Epub 2017 Oct 6.

Institute of Crop Science, National Agriculture and Food Research Organization, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602, Japan.

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http://dx.doi.org/10.1186/s12864-017-4108-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6389181PMC
October 2017

Generation of expressed sequence tags for discovery of genes responsible for floral traits of Chrysanthemum morifolium by next-generation sequencing technology.

BMC Genomics 2017 Sep 4;18(1):683. Epub 2017 Sep 4.

Institute of Vegetable and Floriculture Science, National Agriculture and Food Research Organization (NARO), 2-1 Fujimoto, Tsukuba, Ibaraki, 305-0852, Japan.

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https://bmcgenomics.biomedcentral.com/articles/10.1186/s1286
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http://dx.doi.org/10.1186/s12864-017-4061-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5584320PMC
September 2017

Erratum to: Sequence differences in the seed dormancy gene Qsd1 among various wheat genomes.

BMC Genomics 2017 08 29;18(1):663. Epub 2017 Aug 29.

Institute of Plant Science and Resources, Okayama University, Kurashiki, 710-0046, Japan.

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http://dx.doi.org/10.1186/s12864-017-4046-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5576352PMC
August 2017

Sequence differences in the seed dormancy gene Qsd1 among various wheat genomes.

BMC Genomics 2017 06 29;18(1):497. Epub 2017 Jun 29.

Institute of Plant Science and Resources, Okayama University, Kurashiki, 710-0046, Japan.

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http://dx.doi.org/10.1186/s12864-017-3880-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5492916PMC
June 2017

A Case of Gastric Antral Vascular Ectasia Which Was Aggravated by Acid Reducer.

Case Rep Gastroenterol 2017 Jan-Apr;11(1):64-71. Epub 2017 Feb 28.

aDivision of Gastroenterology, Department of Internal Medicine, Aichi Medical University, Nagakute, Japan.

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http://dx.doi.org/10.1159/000455967DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5465652PMC
February 2017

A novel open-type biosensor for the in-situ monitoring of biochemical oxygen demand in an aerobic environment.

Sci Rep 2016 12 5;6:38552. Epub 2016 Dec 5.

Division of Animal Environment and Waste Management Research, Institute of Livestock and Grassland Science, National Agriculture and Food Research Organization (NARO), 2 Ikenodai, Tsukuba 305-0901, Japan.

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http://dx.doi.org/10.1038/srep38552DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5137150PMC
December 2016

Expression of and Is Associated with Color Variation in Tan-Colored Injured Leaves of Sorghum.

Front Plant Sci 2016 21;7:1718. Epub 2016 Nov 21.

Agrogenomics Research Center, National Institute of Agrobiological SciencesTsukuba, Japan; Institute of Crop Science, National Agriculture and Food Research OrganizationTsukuba, Japan.

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http://dx.doi.org/10.3389/fpls.2016.01718DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5116553PMC
November 2016

Comprehensive detection of bacterial carbohydrate-active enzyme coding genes expressed in cow rumen.

Anim Sci J 2016 Nov 15;87(11):1363-1370. Epub 2016 Feb 15.

NARO Institute of Livestock and Grassland Science.

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http://dx.doi.org/10.1111/asj.12585DOI Listing
November 2016

Detection of Novel QTLs Regulating Grain Size in Extra-Large Grain Rice (Oryza sativa L.) Lines.

Rice (N Y) 2016 Dec 25;9(1):34. Epub 2016 Jul 25.

Fukui Prefectural University, Faculty of Biotechnology, 4-1-1 Kenjojima, Matsuoka, Eiheiji-cho, Yoshida-gun, Fukui, 910-1195, Japan.

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http://dx.doi.org/10.1186/s12284-016-0109-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4960101PMC
December 2016

Characterization of a mini core collection of Japanese wheat varieties using single-nucleotide polymorphisms generated by genotyping-by-sequencing.

Breed Sci 2016 Mar 1;66(2):213-25. Epub 2016 Mar 1.

Plant Genome Research Unit, National Institute of Agrobiological Sciences, 2-1-2, Kan-non-dai, Tsukuba, Ibaraki 305-8602, Japan; Graduate School of Life and Environmental Sciences, University of Tsukuba, 1-1-1, Ten-noh-dai, Tsukuba, Ibaraki 305-8572, Japan.

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http://dx.doi.org/10.1270/jsbbs.66.213DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4784999PMC
March 2016

Genome-Wide Transcriptome Analysis of Cadmium Stress in Rice.

Biomed Res Int 2016 29;2016:9739505. Epub 2016 Feb 29.

Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1155/2016/9739505DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4789393PMC
December 2016

Enhanced electrical power generation using flame-oxidized stainless steel anode in microbial fuel cells and the anodic community structure.

Biotechnol Biofuels 2016 12;9:62. Epub 2016 Mar 12.

Animal Waste Management and Environment Division, NARO Institute of Livestock and Grassland Science2, Ikenodai, Tsukuba, 305-0901 Japan.

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http://dx.doi.org/10.1186/s13068-016-0480-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4788886PMC
March 2016

TENOR: Database for Comprehensive mRNA-Seq Experiments in Rice.

Plant Cell Physiol 2016 Jan 16;57(1):e7. Epub 2015 Nov 16.

Agrogenomics Research Center, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602 Japan

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http://dx.doi.org/10.1093/pcp/pcv179DOI Listing
January 2016

The radish genome and comprehensive gene expression profile of tuberous root formation and development.

Sci Rep 2015 Jun 9;5:10835. Epub 2015 Jun 9.

1] Tokyo University of Agriculture, 1-1-1, Sakuragaoka, Setagaya-ku, Tokyo 156-8502, Japan [2] National Institute of Agrobiological Sciences, 1-2, Owashi, Tsukuba, Ibaraki, 305-8634, Japan.

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http://dx.doi.org/10.1038/srep10835DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4650646PMC
June 2015

Whole-genome analysis of herbicide-tolerant mutant rice generated by Agrobacterium-mediated gene targeting.

Plant Cell Physiol 2015 Jan 4;56(1):116-25. Epub 2014 Nov 4.

Agrogenomics Research Center, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602 Japan Graduate School of Nanobioscience, Yokohama City University, 22-2 Seto, Kanazawa, Yokohama, 236-0027 Japan

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http://dx.doi.org/10.1093/pcp/pcu153DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4301741PMC
January 2015

Expression level of a flavonoid 3'-hydroxylase gene determines pathogen-induced color variation in sorghum.

BMC Res Notes 2014 Oct 27;7:761. Epub 2014 Oct 27.

National Institute of Agrobiological Sciences, Agrogenomics Research Center, 1-2, Kannondai 2-chome, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1186/1756-0500-7-761DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4219097PMC
October 2014

A thaumatin-like protein, Rj4, controls nodule symbiotic specificity in soybean.

Plant Cell Physiol 2014 Sep 23;55(9):1679-89. Epub 2014 Jul 23.

National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602 Japan

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http://dx.doi.org/10.1093/pcp/pcu099DOI Listing
September 2014

Genomic inversion caused by gamma irradiation contributes to downregulation of a WBC11 homolog in bloomless sorghum.

Theor Appl Genet 2013 Jun 6;126(6):1513-20. Epub 2013 Mar 6.

Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences (NIAS), 1-2 Kannondai 2-chome, Tsukuba, Ibaraki 305-8602, Japan.

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http://link.springer.com/content/pdf/10.1007%2Fs00122-013-20
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http://link.springer.com/10.1007/s00122-013-2069-x
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http://dx.doi.org/10.1007/s00122-013-2069-xDOI Listing
June 2013

Analyses of pig genomes provide insight into porcine demography and evolution.

Authors:
Martien A M Groenen Alan L Archibald Hirohide Uenishi Christopher K Tuggle Yasuhiro Takeuchi Max F Rothschild Claire Rogel-Gaillard Chankyu Park Denis Milan Hendrik-Jan Megens Shengting Li Denis M Larkin Heebal Kim Laurent A F Frantz Mario Caccamo Hyeonju Ahn Bronwen L Aken Anna Anselmo Christian Anthon Loretta Auvil Bouabid Badaoui Craig W Beattie Christian Bendixen Daniel Berman Frank Blecha Jonas Blomberg Lars Bolund Mirte Bosse Sara Botti Zhan Bujie Megan Bystrom Boris Capitanu Denise Carvalho-Silva Patrick Chardon Celine Chen Ryan Cheng Sang-Haeng Choi William Chow Richard C Clark Christopher Clee Richard P M A Crooijmans Harry D Dawson Patrice Dehais Fioravante De Sapio Bert Dibbits Nizar Drou Zhi-Qiang Du Kellye Eversole João Fadista Susan Fairley Thomas Faraut Geoffrey J Faulkner Katie E Fowler Merete Fredholm Eric Fritz James G R Gilbert Elisabetta Giuffra Jan Gorodkin Darren K Griffin Jennifer L Harrow Alexander Hayward Kerstin Howe Zhi-Liang Hu Sean J Humphray Toby Hunt Henrik Hornshøj Jin-Tae Jeon Patric Jern Matthew Jones Jerzy Jurka Hiroyuki Kanamori Ronan Kapetanovic Jaebum Kim Jae-Hwan Kim Kyu-Won Kim Tae-Hun Kim Greger Larson Kyooyeol Lee Kyung-Tai Lee Richard Leggett Harris A Lewin Yingrui Li Wansheng Liu Jane E Loveland Yao Lu Joan K Lunney Jian Ma Ole Madsen Katherine Mann Lucy Matthews Stuart McLaren Takeya Morozumi Michael P Murtaugh Jitendra Narayan Dinh Truong Nguyen Peixiang Ni Song-Jung Oh Suneel Onteru Frank Panitz Eung-Woo Park Hong-Seog Park Geraldine Pascal Yogesh Paudel Miguel Perez-Enciso Ricardo Ramirez-Gonzalez James M Reecy Sandra Rodriguez-Zas Gary A Rohrer Lauretta Rund Yongming Sang Kyle Schachtschneider Joshua G Schraiber John Schwartz Linda Scobie Carol Scott Stephen Searle Bertrand Servin Bruce R Southey Goran Sperber Peter Stadler Jonathan V Sweedler Hakim Tafer Bo Thomsen Rashmi Wali Jian Wang Jun Wang Simon White Xun Xu Martine Yerle Guojie Zhang Jianguo Zhang Jie Zhang Shuhong Zhao Jane Rogers Carol Churcher Lawrence B Schook

Nature 2012 Nov;491(7424):393-8

Animal Breeding and Genomics Centre, Wageningen University, De Elst 1, 6708 WD, Wageningen, The Netherlands.

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http://www.umass.edu/vetimm/docs/Groenen_etal_2012.pdf
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http://www.nature.com/doifinder/10.1038/nature11622
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http://dx.doi.org/10.1038/nature11622DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3566564PMC
November 2012

Simultaneous RNA-seq analysis of a mixed transcriptome of rice and blast fungus interaction.

PLoS One 2012 6;7(11):e49423. Epub 2012 Nov 6.

Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0049423PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3490861PMC
April 2013

Angiotensin II type 1 receptor antagonist prevents hepatic carcinoma in rats with nonalcoholic steatohepatitis.

J Gastroenterol 2013 Apr 14;48(4):491-503. Epub 2012 Aug 14.

Division of Metabolism and Biosystemic Science, Department of Internal Medicine, Asahikawa Medical College, Asahikawa, Hokkaido, Japan.

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http://dx.doi.org/10.1007/s00535-012-0651-7DOI Listing
April 2013

Global transcriptome analysis reveals distinct expression among duplicated genes during sorghum-interaction.

BMC Plant Biol 2012 Jul 29;12:121. Epub 2012 Jul 29.

National Institute of Agrobiological Sciences, Agrogenomics Research Center, 1-2, Kannondai 2-chome, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1186/1471-2229-12-121DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3480847PMC
July 2012

A SHORT INTERNODES (SHI) family transcription factor gene regulates awn elongation and pistil morphology in barley.

J Exp Bot 2012 Sep 12;63(14):5223-32. Epub 2012 Jul 12.

Institute of Plant Science and Resources, Okayama University, 2-20-1 Chuo, Kurashiki 710-0046, Japan.

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http://dx.doi.org/10.1093/jxb/ers182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3430995PMC
September 2012

The β-conglycinin deficiency in wild soybean is associated with the tail-to-tail inverted repeat of the α-subunit genes.

Plant Mol Biol 2012 Feb 23;78(3):301-9. Epub 2011 Dec 23.

National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1007/s11103-011-9865-yDOI Listing
February 2012

Molecular spectrum of somaclonal variation in regenerated rice revealed by whole-genome sequencing.

Plant Cell Physiol 2012 Jan 7;53(1):256-64. Epub 2011 Dec 7.

Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan.

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http://dx.doi.org/10.1093/pcp/pcr172DOI Listing
January 2012

Positional cloning of ds1, the target leaf spot resistance gene against Bipolaris sorghicola in sorghum.

Theor Appl Genet 2011 Jun 27;123(1):131-42. Epub 2011 Mar 27.

National Institute of Agrobiological Sciences, Tsukuba, 305-8602, Japan.

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http://dx.doi.org/10.1007/s00122-011-1572-1DOI Listing
June 2011

Asymmetric distribution of gene expression in the centromeric region of rice chromosome 5.

Front Plant Sci 2011 6;2:16. Epub 2011 Jun 6.

Plant Genome Research Unit, Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences Tsukuba, Ibaraki, Japan.

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http://dx.doi.org/10.3389/fpls.2011.00016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3355683PMC
August 2012

Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L.).

BMC Genomics 2010 Dec 2;11:683. Epub 2010 Dec 2.

National Institute of Agrobiological Sciences (NIAS), Division of Genome and Biodiversity Research, 1-2 Kannondai 2-chome, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1186/1471-2164-11-683DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3016417PMC
December 2010

Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication.

Plant J 2010 Nov 5;64(3):498-510. Epub 2010 Oct 5.

Plant Disease Resistance Research Unit, Division of Plant Sciences, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1111/j.1365-313X.2010.04348.xDOI Listing
November 2010

Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.).

Theor Appl Genet 2009 Oct 7;119(6):1143-53. Epub 2009 Aug 7.

National Institute of Vegetable and Tea Science (NIVTS), National Agriculture and Food Research Organization (NARO), 360 Kusawa, Ano, Tsu, Mie 514-2392, Japan.

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http://dx.doi.org/10.1007/s00122-009-1116-0DOI Listing
October 2009

Development of intron-flanking EST markers for the Lolium/Festuca complex using rice genomic information.

Theor Appl Genet 2009 May 27;118(8):1549-60. Epub 2009 Mar 27.

National Agricultural Research Center for Hokkaido Region, Hitsujigaoka 1, Toyohira, Sapporo, 062-8555, Japan.

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http://dx.doi.org/10.1007/s00122-009-1003-8DOI Listing
May 2009

Genome-wide validation of Magnaporthe grisea gene structures based on transcription evidence.

FEBS Lett 2009 Feb 30;583(4):797-800. Epub 2009 Jan 30.

National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1016/j.febslet.2009.01.041DOI Listing
February 2009

Two adjacent nucleotide-binding site-leucine-rich repeat class genes are required to confer Pikm-specific rice blast resistance.

Genetics 2008 Dec 20;180(4):2267-76. Epub 2008 Oct 20.

QTL Genomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1534/genetics.108.095034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2600957PMC
December 2008

Construction of SSR-based chromosome map in bunching onion (Allium fistulosum).

Theor Appl Genet 2008 Nov 26;117(8):1213-23. Epub 2008 Sep 26.

National Institute of Vegetable and Tea Science (NIVTS), NARO, 360 Ano-Kusawa, Tsu, Mie, 514-2392, Japan.

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http://dx.doi.org/10.1007/s00122-008-0849-5DOI Listing
November 2008

Characterization of chromosome ends on the basis of the structure of TrsA subtelomeric repeats in rice (Oryza sativa L.).

Mol Genet Genomics 2008 Jul 8;280(1):19-24. Epub 2008 Apr 8.

National Institute of Agrobiological Sciences, 1-2, Kannondai 2-chome, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1007/s00438-008-0341-6DOI Listing
July 2008

Chromosome-specific distribution of nucleotide substitutions in telomeric repeats of rice (Oryza sativa L.).

Mol Biol Evol 2008 Jan 16;25(1):62-8. Epub 2007 Oct 16.

National Institute of Agrobiological Sciences, 1-2, Kannondai 2-chome, Tsukuba, Ibaraki 305-8602, Japan.

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https://academic.oup.com/mbe/article-lookup/doi/10.1093/molb
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http://dx.doi.org/10.1093/molbev/msm227DOI Listing
January 2008

Identification and mapping of expressed genes, simple sequence repeats and transposable elements in centromeric regions of rice chromosomes.

DNA Res 2006 Dec 12;13(6):267-74. Epub 2007 Feb 12.

National Institute of Agrobiological Sciences, 1-2 Kannondai 2-chome, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1093/dnares/dsm001DOI Listing
December 2006

Parallel computing of a digital hologram and particle searching for microdigital-holographic particle-tracking velocimetry.

Appl Opt 2007 Feb;46(4):538-43

Department of Applied Electronics, Tokyo University of Science, Noda, Chiba, Japan.

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http://dx.doi.org/10.1364/ao.46.000538DOI Listing
February 2007

Analysis of expressed sequence tags from Cryptomeria japonica pollen reveals novel pollen-specific transcripts.

Tree Physiol 2006 Dec;26(12):1517-28

Department of Forest Genetics, Forestry and Forest Products Research Institute, Tsukuba, Ibaraki 305-8687, Japan.

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http://dx.doi.org/10.1093/treephys/26.12.1517DOI Listing
December 2006

Sequence comparison of distal and proximal ribosomal DNA arrays in rice (Oryza sativa L.) chromosome 9S and analysis of their flanking regions.

Theor Appl Genet 2006 Aug 30;113(3):419-28. Epub 2006 May 30.

Rice Genome Research Program, National Institute of Agrobiological Sciences/Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki, 305-8602, Japan.

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http://dx.doi.org/10.1007/s00122-006-0307-1DOI Listing
August 2006

Comparative analysis of expressed sequence tags of conifers and angiosperms reveals sequences specifically conserved in conifers.

Plant Mol Biol 2005 Dec;59(6):895-907

Genome Analysis Laboratory, Department of Forest Genetics, Forestry and Forest Products Research Institute, 1 Matsunosato, Tsukuba, 305-8687, Ibaraki, Japan. udino@ affrc.go.jp

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http://dx.doi.org/10.1007/s11103-005-2080-yDOI Listing
December 2005

Composition and structure of the centromeric region of rice chromosome 8.

Plant Cell 2004 Apr 22;16(4):967-76. Epub 2004 Mar 22.

Rice Genome Research Program, National Institute of Agrobiological Sciences/Institute of the Society for Techno-Inovation of Agriculture, Forestry, and Fisheries, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1105/tpc.019273DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC412870PMC
April 2004