Hiroyo Nishide

Hiroyo Nishide

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Hiroyo Nishide

Hiroyo Nishide

Publications by authors named "Hiroyo Nishide"

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14Publications

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RNA-Seq Analysis Reveals Genes Related to Photoreception, Nutrient Uptake, and Toxicity in a Noxious Red-Tide Raphidophyte .

Front Microbiol 2019 31;10:1764. Epub 2019 Jul 31.

Laboratory of Genome Informatics, National Institute for Basic Biology, National Institutes of Natural Sciences, Okazaki, Japan.

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http://dx.doi.org/10.3389/fmicb.2019.01764DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6685483PMC
July 2019

MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons.

Nucleic Acids Res 2019 Jan;47(D1):D382-D389

Laboratory of Genome Informatics, National Institute for Basic Biology, National Institutes of Natural Sciences, Nishigonaka 38, Myodaiji, Okazaki, Aichi 444-8585, Japan.

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http://dx.doi.org/10.1093/nar/gky1054DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324027PMC
January 2019

Complete Genome Sequence of Aurantimicrobium minutum Type Strain KNCT, a Planktonic Ultramicrobacterium Isolated from River Water.

Genome Announc 2016 Jun 30;4(3). Epub 2016 Jun 30.

Genetic Strains Research Center, National Institute of Genetics, Mishima, Japan The Graduate University for Advanced Studies (SOKENDAI), Mishima, Japan.

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http://genomea.asm.org/lookup/doi/10.1128/genomeA.00616-16
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http://dx.doi.org/10.1128/genomeA.00616-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4929513PMC
June 2016

Construction of an ortholog database using the semantic web technology for integrative analysis of genomic data.

PLoS One 2015 13;10(4):e0122802. Epub 2015 Apr 13.

Laboratory of Genome Informatics, National Institute for Basic Biology, National Institutes of Natural Sciences, Okazaki, Aichi, Japan; Data Integration and Analysis Facility, National Institute for Basic Biology, National Institutes of Natural Sciences, Okazaki, Aichi, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0122802PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4395280PMC
January 2016

Epigenetic modification maintains intrinsic limb-cell identity in Xenopus limb bud regeneration.

Dev Biol 2015 Oct 14;406(2):271-82. Epub 2015 Aug 14.

Department of Developmental Biology and Neurosciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan; Department of Biochemistry and Molecular Biology, Faculty of Agriculture and Life Science, Hirosaki University, Hirosaki, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.ydbio.2015.08.013DOI Listing
October 2015

RNA-seq Transcriptional Profiling of an Arbuscular Mycorrhiza Provides Insights into Regulated and Coordinated Gene Expression in Lotus japonicus and Rhizophagus irregularis.

Plant Cell Physiol 2015 Aug 25;56(8):1490-511. Epub 2015 May 25.

Faculty of Agriculture, Shinshu University, Minamiminowa, Nagano 399-4598, Japan

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http://dx.doi.org/10.1093/pcp/pcv071DOI Listing
August 2015

Diofenolan induces male offspring production through binding to the juvenile hormone receptor in Daphnia magna.

Aquat Toxicol 2015 Feb 24;159:44-51. Epub 2014 Nov 24.

Environmental Quality Measurement Section, Research Center for Environmental Risk, National Institute for Environmental Studies, 16-2 Onogawa, Tsukuba 305-8506, Ibaraki, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.aquatox.2014.11.015DOI Listing
February 2015

MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data.

Nucleic Acids Res 2015 Jan 14;43(Database issue):D270-6. Epub 2014 Nov 14.

Laboratory of Genome Informatics, National Institute for Basic Biology, National Institutes of Natural Sciences, Nishigonaka 38, Myodaiji, Okazaki, Aichi 444-8585, Japan.

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http://dx.doi.org/10.1093/nar/gku1152DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383954PMC
January 2015

Molecular impact of juvenile hormone agonists on neonatal Daphnia magna.

J Appl Toxicol 2014 May 5;34(5):537-44. Epub 2013 Sep 5.

Okazaki Institute for Integrative Bioscience, National Institute for Basic Biology, National Institutes of Natural Sciences, 5-1 Higashiyama, Myodaiji, Okazaki, Aichi, 444-8787, Japan; Department of Basic Biology, Faculty of Life Science, Graduate University for Advanced Studies (SOKENDAI), 5-1 Higashiyama, Myodaiji, Okazaki, Aichi, 444-8787, Japan.

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http://dx.doi.org/10.1002/jat.2922DOI Listing
May 2014

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

J Biomed Semantics 2014 Feb 5;5(1). Epub 2014 Feb 5.

Database Center for Life Science, Research Organization of Information and Systems, 2-11-16, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.

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http://dx.doi.org/10.1186/2041-1480-5-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3978116PMC
February 2014

MBGD update 2013: the microbial genome database for exploring the diversity of microbial world.

Nucleic Acids Res 2013 Jan 30;41(Database issue):D631-5. Epub 2012 Oct 30.

Laboratory of Genome Informatics, Data Integration and Analysis Facility, National Institute for Basic Biology, National Institutes of Natural Sciences, Nishigonaka 38, Myodaiji, Okazaki, Aichi 444-8585, Japan.

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http://dx.doi.org/10.1093/nar/gks1006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531178PMC
January 2013

Analysis of expressed sequence tags of the water flea Daphnia magna.

Genome 2005 Aug;48(4):606-9

Okazaki Institute for Integrative Bioscience, National Institutes of Natural Sciences, Japan.

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http://dx.doi.org/10.1139/g05-038DOI Listing
August 2005