Hirotada Mori

Hirotada Mori

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Hirotada Mori

Publications by authors named "Hirotada Mori"

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Optimization of RK2-based gene introduction system for Bacillus subtilis.

J Gen Appl Microbiol 2019 Dec 5;65(5):265-272. Epub 2019 Jun 5.

Interdisciplinary Graduate School of Science and Technology, Shinshu University.

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http://dx.doi.org/10.2323/jgam.2018.11.005DOI Listing
December 2019

Combinatorial selection for replicable RNA by Qβ replicase while maintaining encoded gene function.

PLoS One 2017 22;12(3):e0174130. Epub 2017 Mar 22.

Graduate School of Information Science and Technology, Osaka University, 1-5 Yamadaoka, Suita, Osaka, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0174130PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5362092PMC
August 2017

In vitro membrane protein synthesis inside Sec translocon-reconstituted cell-sized liposomes.

Sci Rep 2016 11 3;6:36466. Epub 2016 Nov 3.

Department of Biotechnology, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, Japan.

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http://dx.doi.org/10.1038/srep36466DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5093552PMC
November 2016

Comprehensive identification of translation start sites by tetracycline-inhibited ribosome profiling.

DNA Res 2016 Jun 23;23(3):193-201. Epub 2016 Mar 23.

Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0101, Japan

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http://dx.doi.org/10.1093/dnares/dsw008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4909307PMC
June 2016

Toward Network Biology in E. coli Cell.

Adv Exp Med Biol 2015 ;883:155-68

Department of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA.

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http://dx.doi.org/10.1007/978-3-319-23603-2_9DOI Listing
April 2016

A robust platform for chemical genomics in bacterial systems.

Mol Biol Cell 2016 Mar 20;27(6):1015-25. Epub 2016 Jan 20.

Department of Biochemistry and Biomedical Sciences, Michael G. DeGroote Institute for Infectious Disease Research, McMaster University, Hamilton, ON L8S 4L8, Canada

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http://dx.doi.org/10.1091/mbc.E15-08-0573DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4791123PMC
March 2016

Identification of essential genes and synthetic lethal gene combinations in Escherichia coli K-12.

Methods Mol Biol 2015 ;1279:45-65

Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0101, Japan,

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http://link.springer.com/content/pdf/10.1007%2F978-1-4939-23
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http://link.springer.com/10.1007/978-1-4939-2398-4_4
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http://dx.doi.org/10.1007/978-1-4939-2398-4_4DOI Listing
October 2015

Effect of codon adaptation on codon-level and gene-level translation efficiency in vivo.

BMC Genomics 2014 Dec 16;15:1115. Epub 2014 Dec 16.

Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata 997-0017, Japan.

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http://dx.doi.org/10.1186/1471-2164-15-1115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4378010PMC
December 2014

Development of a system for discovery of genetic interactions for essential genes in Escherichia coli K-12.

Genes Genet Syst 2013 ;88(4):233-40

Graduate School of Biological Science, Nara Institute of Science and Technology.

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http://dx.doi.org/10.1266/ggs.88.233DOI Listing
September 2014

Integrating reductive and synthetic approaches in biology using man-made cell-like compartments.

Sci Rep 2014 Apr 17;4:4722. Epub 2014 Apr 17.

Department of Applied Physics, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan.

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http://dx.doi.org/10.1038/srep04722DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3989557PMC
April 2014

What hath DNA wrought? CRISPR-CAS gene silencing and engineering from bacteria to humans: comment on "Diversity, evolution, and therapeutic applications of small RNAs in prokaryotic and eukaryotic immune systems" by Edwin L. Cooper and Nicola Overstreet.

Phys Life Rev 2014 Mar 12;11(1):144-5; discussion 149-51. Epub 2013 Dec 12.

Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, Japan.

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http://dx.doi.org/10.1016/j.plrev.2013.12.003DOI Listing
March 2014

Crucial roles of MicA and RybB as vital factors for σ-dependent cell lysis in Escherichia coli long-term stationary phase.

J Mol Microbiol Biotechnol 2013 16;23(3):227-32. Epub 2013 Apr 16.

Applied Molecular Bioscience, Graduate School of Medicine, Yamaguchi University, Ube, Japan.

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http://dx.doi.org/10.1159/000350370DOI Listing
October 2013

GlgS, described previously as a glycogen synthesis control protein, negatively regulates motility and biofilm formation in Escherichia coli.

Biochem J 2013 Jun;452(3):559-73

Instituto de Agrobiotecnología, Universidad Pública de Navarra/Consejo Superior de Investigaciones Científicas/Gobierno de Navarra, Mutiloako etorbidea zenbaki gabe, 31192 Mutiloabeti, Nafarroa, Spain.

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http://dx.doi.org/10.1042/BJ20130154DOI Listing
June 2013

The tRNA thiolation pathway modulates the intracellular redox state in Escherichia coli.

J Bacteriol 2013 May 1;195(9):2039-49. Epub 2013 Mar 1.

Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, Japan.

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http://dx.doi.org/10.1128/JB.02180-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3624572PMC
May 2013

Genome-wide screening with hydroxyurea reveals a link between nonessential ribosomal proteins and reactive oxygen species production.

J Bacteriol 2013 Mar 4;195(6):1226-35. Epub 2013 Jan 4.

Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, Japan.

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http://dx.doi.org/10.1128/JB.02145-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3592001PMC
March 2013

Glycogen is the primary source of glucose during the lag phase of E. coli proliferation.

Biochim Biophys Acta 2012 Dec 27;1824(12):1442-8. Epub 2012 Jun 27.

Graduate School of Science and Engineering, Yamaguchi University, 1677-1 Yoshida, Yamaguchi-shi, Yamaguchi 753-8512, Japan.

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http://petit.lib.yamaguchi-u.ac.jp/G0000006y2j2/file/20067/2
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http://linkinghub.elsevier.com/retrieve/pii/S157096391200131
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http://dx.doi.org/10.1016/j.bbapap.2012.06.010DOI Listing
December 2012

Comparative genomics and drug resistance of a geographic variant of ST239 methicillin-resistant Staphylococcus aureus emerged in Russia.

PLoS One 2012 19;7(1):e29187. Epub 2012 Jan 19.

Division of Bacteriology, Department of Infectious Disease Control and International Medicine, Niigata University Graduate School of Medical and Dental Sciences, Niigata, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0029187PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3261861PMC
June 2012

Investigating the effects of perturbations to pgi and eno gene expression on central carbon metabolism in Escherichia coli using (13)C metabolic flux analysis.

Microb Cell Fact 2012 Jun 21;11:87. Epub 2012 Jun 21.

Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, 1-5 Yamadaoka, Suita, Osaka 565-0871, Japan.

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http://dx.doi.org/10.1186/1475-2859-11-87DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3778843PMC
June 2012

Environmental dependency of gene knockouts on phenotype microarray analysis in Escherichia coli.

J Bioinform Comput Biol 2010 Dec;8 Suppl 1:83-99

Department of Bioinformatics, Ritsumeikan University, Kusatu, Shiga, Japan.

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http://dx.doi.org/10.1142/s021972001000521xDOI Listing
December 2010

Predicting essential genes based on network and sequence analysis.

Mol Biosyst 2009 Dec;5(12):1672-8

Institute of Biomedical Informatics, Center for Systems and Synthetic Biology, National Yang-Ming University, Taipei, 112, Taiwan.

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http://dx.doi.org/10.1039/B900611GDOI Listing
December 2009

Computational and systems biology.

Mol Biosyst 2009 Dec 6;5(12):1391. Epub 2009 Nov 6.

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http://dx.doi.org/10.1039/b921381nDOI Listing
December 2009

Phenotype profiling of single gene deletion mutants of E. coli using Biolog technology.

Genome Inform 2008 ;21:42-52

Department of Bioscience and Bioinformatics, Ritsumeikan University, Kusatsu, Shiga, Japan.

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July 2009

Essential core of protein-protein interaction network in Escherichia coli.

J Proteome Res 2009 Apr;8(4):1925-31

Institute of Biomedical Informatics, Center for Systems and Synthetic Biology, National Yang-Ming University, Taipei 112, Taiwan.

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http://dx.doi.org/10.1021/pr8008786DOI Listing
April 2009

Systematic genome-wide scanning for genes involved in ATP generation in Escherichia coli.

Metab Eng 2009 Jan 26;11(1):1-7. Epub 2008 Jul 26.

Biofrontier Laboratories, Kyowa Hakko Kogyo Co. Ltd., 3-6-6 Asahimachi, Machidashi, Tokyo 194-8533, Japan.

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http://linkinghub.elsevier.com/retrieve/pii/S109671760800042
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http://dx.doi.org/10.1016/j.ymben.2008.07.003DOI Listing
January 2009

The outer membrane TolC is involved in cysteine tolerance and overproduction in Escherichia coli.

Appl Microbiol Biotechnol 2009 Jan 17;81(5):903-13. Epub 2008 Sep 17.

Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0192, Japan.

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http://dx.doi.org/10.1007/s00253-008-1686-9DOI Listing
January 2009

High-throughput, quantitative analyses of genetic interactions in E. coli.

Nat Methods 2008 Sep;5(9):781-7

Department of Microbiology and Immunology, University of California at San Francisco, 600 16th Street, San Francisco, California 94158, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2700713PMC
http://dx.doi.org/10.1038/nmeth.1240DOI Listing
September 2008

Comprehensive analysis of the effects of Escherichia coli ORFs on protein translation reaction.

Mol Cell Proteomics 2008 Aug 2;7(8):1530-40. Epub 2008 May 2.

Department of Bioinformatics Engineering, Osaka University, Japan.

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http://dx.doi.org/10.1074/mcp.M800051-MCP200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2500233PMC
August 2008

The construction of systematic in-frame, single-gene knockout mutant collection in Escherichia coli K-12.

Methods Mol Biol 2008 ;416:171-81

Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, Japan.

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http://link.springer.com/10.1007/978-1-59745-321-9_11
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http://dx.doi.org/10.1007/978-1-59745-321-9_11DOI Listing
June 2008

The applications of systematic in-frame, single-gene knockout mutant collection of Escherichia coli K-12.

Methods Mol Biol 2008 ;416:183-94

Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, Japan.

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http://dx.doi.org/10.1007/978-1-59745-321-9_12DOI Listing
June 2008

Metabolomic analysis of microorganisms.

Mol Biosyst 2008 Feb 4;4(2):108-9. Epub 2008 Jan 4.

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http://dx.doi.org/10.1039/b719453fDOI Listing
February 2008

Crystal structure of AcrB in complex with a single transmembrane subunit reveals another twist.

Structure 2007 Dec;15(12):1663-73

Department of Chemistry, Biochemistry and Biophysics, Gothenburg University, 40530 Gothenburg, Sweden.

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http://dx.doi.org/10.1016/j.str.2007.09.023DOI Listing
December 2007

A genome-wide approach to identify the genes involved in biofilm formation in E. coli.

DNA Res 2007 Dec 7;14(6):237-46. Epub 2008 Jan 7.

Graduate School of Science and Technology, Kobe University, Kobe, Hyogo 657-8501, Japan.

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https://academic.oup.com/dnaresearch/article-lookup/doi/10.1
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http://dx.doi.org/10.1093/dnares/dsm024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779908PMC
December 2007

B1500, a small membrane protein, connects the two-component systems EvgS/EvgA and PhoQ/PhoP in Escherichia coli.

Proc Natl Acad Sci U S A 2007 Nov 12;104(47):18712-7. Epub 2007 Nov 12.

Department of Bioscience, Graduate School of Agriculture, Kinki University, 3327-204, Nakamachi, Nara, 631-8505, Japan.

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http://dx.doi.org/10.1073/pnas.0705768104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2141842PMC
November 2007

Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research.

DNA Res 2005 9;12(5):291-9. Epub 2006 Jan 9.

Graduate School of Biological Sciences, Nara Institute of Science and Technology, Takayama, Ikoma, Nara, Japan.

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http://dx.doi.org/10.1093/dnares/dsi012DOI Listing
October 2007

The protein network of bacterial motility.

Mol Syst Biol 2007 31;3:128. Epub 2007 Jul 31.

Institute of Genetics, Forschungszentrum Karlsruhe, Karlsruhe, Germany.

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http://dx.doi.org/10.1038/msb4100166DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1943423PMC
October 2007

P-BOSS: a new filtering method for treasure hunting in metabolomics.

J Chromatogr A 2007 Aug 19;1159(1-2):142-8. Epub 2007 Mar 19.

Human Metabolome Technologies, Inc., Yamagata 997-0052, Japan.

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http://linkinghub.elsevier.com/retrieve/pii/S002196730700503
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http://dx.doi.org/10.1016/j.chroma.2007.03.054DOI Listing
August 2007

Hyperexpression of the osmB gene in an acidic phospholipid-deficient Escherichia coli mutant.

J Gen Appl Microbiol 2007 Apr;53(2):143-51

Department of Biochemistry and Molecular Biology, Course in Life Science, Graduate School of Science and Engineering, Saitama University, Saitama 338-8570, Japan.

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http://dx.doi.org/10.2323/jgam.53.143DOI Listing
April 2007

Inhibitory effect of phosphoenolpyruvate on glycolytic enzymes in Escherichia coli.

Res Microbiol 2007 Mar 20;158(2):159-63. Epub 2006 Dec 20.

Department of Biochemistry, Aichi Medical University School of Medicine, Nagakute, Aichi 480-1195, Japan.

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http://dx.doi.org/10.1016/j.resmic.2006.11.003DOI Listing
March 2007

Genome-wide screening of genes required for swarming motility in Escherichia coli K-12.

J Bacteriol 2007 Feb 22;189(3):950-7. Epub 2006 Nov 22.

Department of Oral Microbiology, Graduate School of Medicine, Dentistry, and Pharmaceutical Sciences, Okayama University, 2-5-1, Shikata, Okayama 700-8525, Japan.

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http://dx.doi.org/10.1128/JB.01294-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1797309PMC
February 2007

Role of phosphoenolpyruvate in the NADP-isocitrate dehydrogenase and isocitrate lyase reaction in Escherichia coli.

J Bacteriol 2007 Feb 1;189(3):1176-8. Epub 2006 Dec 1.

Department of Biochemistry, Aichi Medical University School of Medicine, Aichi 489-1195, Japan.

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http://dx.doi.org/10.1128/JB.01628-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1797289PMC
February 2007

Escherichia coli with a linear genome.

EMBO Rep 2007 Feb 12;8(2):181-7. Epub 2007 Jan 12.

National Institute for Basic Biology (NIBB), Nishigonaka 38, Myodaijicyo, Okazaki 444-8585, Japan.

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http://embor.embopress.org/cgi/doi/10.1038/sj.embor.7400880
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http://dx.doi.org/10.1038/sj.embor.7400880DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1796773PMC
February 2007

Dynamic simulation of an in vitro multi-enzyme system.

FEBS Lett 2007 Feb 12;581(3):413-20. Epub 2007 Jan 12.

Institute for Advanced Biosciences, Keio University, Tsuruoka 997-0035, Japan.

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http://dx.doi.org/10.1016/j.febslet.2006.12.049DOI Listing
February 2007

High-throughput fluorescence labelling of full-length cDNA products based on a reconstituted translation system.

J Biochem 2007 Jan 5;141(1):19-24. Epub 2006 Dec 5.

Department of Biosciences and Informatics, Keio University, Yokohama, Japan.

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http://dx.doi.org/10.1093/jb/mvm003DOI Listing
January 2007

Escherichia coli proteome chips for detecting protein-protein interactions.

Proteomics 2006 Dec;6(24):6433-6

Department of Biosciences and Informatics, Keio University, Yokohama, Japan.

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http://dx.doi.org/10.1002/pmic.200600341DOI Listing
December 2006

Identification and characterization of a second, inducible promoter of relA in Escherichia coli.

Genes Genet Syst 2006 Oct;81(5):299-310

Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, Japan.

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http://dx.doi.org/10.1266/ggs.81.299DOI Listing
October 2006

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110.

Mol Syst Biol 2006 21;2:2006.0007. Epub 2006 Feb 21.

Division of Genome Dynamics, National Institute for Basic Biology, Myodaiji, Okazaki, Aichi Pref., Japan.

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http://dx.doi.org/10.1038/msb4100049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1681481PMC
August 2006

Metabolomics approach for enzyme discovery.

J Proteome Res 2006 Aug;5(8):1979-87

Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0017 Japan.

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http://dx.doi.org/10.1021/pr0600576DOI Listing
August 2006

The yfhQ gene of Escherichia coli encodes a tRNA:Cm32/Um32 methyltransferase.

BMC Mol Biol 2006 Jul 18;7:23. Epub 2006 Jul 18.

Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, ul. ks, Trojdena 4, 02-109 Warsaw, Poland.

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http://bmcmolbiol.biomedcentral.com/articles/10.1186/1471-21
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http://dx.doi.org/10.1186/1471-2199-7-23DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1569432PMC
July 2006

Molecular basis of formaldehyde detoxification. Characterization of two S-formylglutathione hydrolases from Escherichia coli, FrmB and YeiG.

J Biol Chem 2006 May 27;281(20):14514-22. Epub 2006 Mar 27.

Banting and Best Department of Medical Research, University of Toronto, Toronto, Ontario M5G 1L6, Canada.

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http://dx.doi.org/10.1074/jbc.M600996200DOI Listing
May 2006

KEGG-based pathway visualization tool for complex omics data.

In Silico Biol 2005 ;5(4):419-23

Institute for Advanced Biosciences, Keio University, Endo 5322, Fujisawa, Kanagawa 252-8520, Japan.

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March 2006

Analysis of organic solvent tolerance in Escherichia coli using gene expression profiles from DNA microarrays.

J Biosci Bioeng 2003 ;95(4):379-83

Department of Biotechnology, School of Engineering, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8603, Japan.

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http://dx.doi.org/10.1016/s1389-1723(03)80071-3DOI Listing
November 2005

Identification of human calphoglin-induced phosphoglucomutase phosphorylation in Escherichia coli.

J Chromatogr B Analyt Technol Biomed Life Sci 2005 Sep;824(1-2):312-8

Department of Neurophysiology, Brain Research Institute, Niigata University, 1-757 Asahi-machi, Niigata 951-8585, Japan.

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http://dx.doi.org/10.1016/j.jchromb.2005.07.011DOI Listing
September 2005

Use of GFP tags to monitor localization of different luciferases in E. coli.

Photochem Photobiol Sci 2005 Sep 9;4(9):740-3. Epub 2005 Jun 9.

Cell Dynamics Research Group, National Institute of Advanced Industrial Science and Technology, Midorigaoka Ikeda, Osaka 563-8577, Japan.

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http://xlink.rsc.org/?DOI=b416747c
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http://dx.doi.org/10.1039/b416747cDOI Listing
September 2005

Identification and functional analysis of Escherichia coli cysteine desulfhydrases.

Appl Environ Microbiol 2005 Jul;71(7):4149-52

Department of Bioscience, Fukui Prefectural University, 4-1-1 Kenjojima, Matsuoka-cho, Fukui 910-1195, Japan.

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http://dx.doi.org/10.1128/AEM.71.7.4149-4152.2005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1169034PMC
July 2005

Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays.

Metab Eng 2005 Jul;7(4):318-27

Biofrontier Laboratories, Kyowa Hakko Kogyo Co. Ltd., Tokyo 194-8533, Japan.

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http://linkinghub.elsevier.com/retrieve/pii/S109671760500049
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http://dx.doi.org/10.1016/j.ymben.2005.06.004DOI Listing
July 2005

Peptidase activity of the Escherichia coli Hsp31 chaperone.

J Biol Chem 2005 Apr 18;280(15):14420-6. Epub 2004 Nov 18.

Stress Molecules, Institut Jacques Monod, Université Paris 7, 2 place Jussieu, 75005 Paris, France.

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http://dx.doi.org/10.1074/jbc.M408296200DOI Listing
April 2005

Analysis of hydrostatic pressure effects on transcription in Escherichia coli by DNA microarray procedure.

Extremophiles 2005 Feb 31;9(1):65-73. Epub 2004 Aug 31.

Department of Biological Information, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa 226-8501, Japan.

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http://dx.doi.org/10.1007/s00792-004-0414-3DOI Listing
February 2005

General enzymatic screens identify three new nucleotidases in Escherichia coli. Biochemical characterization of SurE, YfbR, and YjjG.

J Biol Chem 2004 Dec 15;279(52):54687-94. Epub 2004 Oct 15.

Banting and Best Department of Medical Research, University of Toronto, Ontario M5G 1L6, Canada.

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http://dx.doi.org/10.1074/jbc.M411023200DOI Listing
December 2004

GroEL chaperone binding to beetle luciferases and the implications for refolding when co-expressed.

Biosci Biotechnol Biochem 2004 Oct;68(10):2096-103

Cell Dynamics Research Group, National Institute of Advanced Industrial Science and Technology, Ikeda, Osaka 563-8577, Japan.

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http://www.tandfonline.com/doi/full/10.1271/bbb.68.2096
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http://dx.doi.org/10.1271/bbb.68.2096DOI Listing
October 2004

Effects of mutations in the rpoS gene on cell viability and global gene expression under nitrogen starvation in Escherichia coli.

Microbiology 2004 Aug;150(Pt 8):2543-2553

Department of Biological Chemistry, Faculty of Agriculture, Yamaguchi University, 1677-1 Yoshida, Yamaguchi 753-8515, Japan.

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http://dx.doi.org/10.1099/mic.0.27012-0DOI Listing
August 2004

Application of capillary electrophoresis-mass spectrometry to synthetic in vitro glycolysis studies.

Electrophoresis 2004 Jul;25(13):1996-2002

Institute for Advanced Biosciences, Keio University, Tsuruoka, Japan.

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http://dx.doi.org/10.1002/elps.200305905DOI Listing
July 2004

Signal transduction cascade between EvgA/EvgS and PhoP/PhoQ two-component systems of Escherichia coli.

J Bacteriol 2004 May;186(10):3006-14

Department of Bioscience and Biotechnology, Graduate School of Agriculture, Kinki University, 3327-204 Nakamachi, Nara 631-8505, Japan.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC400602PMC
http://dx.doi.org/10.1128/jb.186.10.3006-3014.2004DOI Listing
May 2004

Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat cultures.

Appl Environ Microbiol 2004 Apr;70(4):2354-66

Institute for Advanced Biosciences, Keio University, Tsuruoka 997-0017, Japan.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC383082PMC
http://dx.doi.org/10.1128/aem.70.4.2354-2366.2004DOI Listing
April 2004

Effect of zwf gene knockout on the metabolism of Escherichia coli grown on glucose or acetate.

Metab Eng 2004 Apr;6(2):164-74

Metabolome Unit, Institute for Advanced Biosciences, Keio University, Tsuruoka, Japan.

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http://dx.doi.org/10.1016/j.ymben.2004.02.004DOI Listing
April 2004

The ATPase domain of HscC (DnaK homolog) is essential for interfering sigma70 activity in E. coli.

FEMS Microbiol Lett 2004 Jan;230(1):99-104

Department of Cell Biology, NARA Institute of Science and Technology, Ikoma, Japan.

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http://dx.doi.org/10.1016/S0378-1097(03)00863-2DOI Listing
January 2004

From the sequence to cell modeling: comprehensive functional genomics in Escherichia coli.

Authors:
Hirotada Mori

J Biochem Mol Biol 2004 Jan;37(1):83-92

Research and Education Center of Genetic Information, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0101, Japan.

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http://dx.doi.org/10.5483/bmbrep.2004.37.1.083DOI Listing
January 2004

Detection of periodicity in eukaryotic genomes on the basis of power spectrum analysis.

Genome Inform 2002 ;13:21-9

Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0101, Japan.

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November 2003