Hirokazu Chiba

Hirokazu Chiba

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Hirokazu Chiba

Hirokazu Chiba

Publications by authors named "Hirokazu Chiba"

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14Publications

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MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons.

Nucleic Acids Res 2019 Jan;47(D1):D382-D389

Laboratory of Genome Informatics, National Institute for Basic Biology, National Institutes of Natural Sciences, Nishigonaka 38, Myodaiji, Okazaki, Aichi 444-8585, Japan.

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http://dx.doi.org/10.1093/nar/gky1054DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324027PMC
January 2019

SPANG: a SPARQL client supporting generation and reuse of queries for distributed RDF databases.

BMC Bioinformatics 2017 Feb 8;18(1):93. Epub 2017 Feb 8.

National Institute for Basic Biology, National Institutes of Natural Sciences, Nishigonaka 38, Myodaiji, Okazaki, Aichi, 444-8585, Japan.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/s12859-017-1531-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5299738PMC
February 2017

The Orthology Ontology: development and applications.

J Biomed Semantics 2016 06 4;7(1):34. Epub 2016 Jun 4.

National Institute for Basic Biology, National Institutes of Natural Sciences, Okazaki, 444-8585, Aichi, Japan.

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http://dx.doi.org/10.1186/s13326-016-0077-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4893294PMC
June 2016

Construction of an ortholog database using the semantic web technology for integrative analysis of genomic data.

PLoS One 2015 13;10(4):e0122802. Epub 2015 Apr 13.

Laboratory of Genome Informatics, National Institute for Basic Biology, National Institutes of Natural Sciences, Okazaki, Aichi, Japan; Data Integration and Analysis Facility, National Institute for Basic Biology, National Institutes of Natural Sciences, Okazaki, Aichi, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0122802PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4395280PMC
January 2016

MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data.

Nucleic Acids Res 2015 Jan 14;43(Database issue):D270-6. Epub 2014 Nov 14.

Laboratory of Genome Informatics, National Institute for Basic Biology, National Institutes of Natural Sciences, Nishigonaka 38, Myodaiji, Okazaki, Aichi 444-8585, Japan.

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http://dx.doi.org/10.1093/nar/gku1152DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383954PMC
January 2015

Improvement of domain-level ortholog clustering by optimizing domain-specific sum-of-pairs score.

BMC Bioinformatics 2014 May 18;15:148. Epub 2014 May 18.

National Institute for Basic Biology, National Institutes of Natural Sciences, Nishigonaka 38, Myodaiji, Okazaki 444-8585, Japan.

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http://dx.doi.org/10.1186/1471-2105-15-148DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4035852PMC
May 2014

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

J Biomed Semantics 2014 Feb 5;5(1). Epub 2014 Feb 5.

Database Center for Life Science, Research Organization of Information and Systems, 2-11-16, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.

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http://dx.doi.org/10.1186/2041-1480-5-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3978116PMC
February 2014

MBGD update 2013: the microbial genome database for exploring the diversity of microbial world.

Nucleic Acids Res 2013 Jan 30;41(Database issue):D631-5. Epub 2012 Oct 30.

Laboratory of Genome Informatics, Data Integration and Analysis Facility, National Institute for Basic Biology, National Institutes of Natural Sciences, Nishigonaka 38, Myodaiji, Okazaki, Aichi 444-8585, Japan.

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http://dx.doi.org/10.1093/nar/gks1006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531178PMC
January 2013

CELLPEDIA: a repository for human cell information for cell studies and differentiation analyses.

Database (Oxford) 2011 29;2011:bar046. Epub 2011 Oct 29.

Computational Biology Research Center, Advanced Industrial Science and Technology (AIST), 2-4-7 Aomi, Koto-ku, Tokyo 135-0064, Japan.

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http://dx.doi.org/10.1093/database/bar046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3204613PMC
February 2012

Weak correlation between sequence conservation in promoter regions and in protein-coding regions of human-mouse orthologous gene pairs.

BMC Genomics 2008 Apr 2;9:152. Epub 2008 Apr 2.

Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.

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http://dx.doi.org/10.1186/1471-2164-9-152DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2335122PMC
April 2008

Cation-controlled assembly of Na+-linked lacunary alpha-Keggin tungstosilicates.

Dalton Trans 2006 Mar 28(9):1213-7. Epub 2005 Nov 28.

Department of Chemistry and Materials Science, Tokyo Institute of Technology, 2-12-1 O-okayama, Meguro-ku, Tokyo 152-8551, Japan.

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http://dx.doi.org/10.1039/b514169aDOI Listing
March 2006

A new 19-metal-atom cluster [(Me2PhP)10Au12Ag7(NO3)9] with a nearly staggered-staggered M5 ring configuration.

Dalton Trans 2005 Aug 11(16):2726-30. Epub 2005 Jul 11.

Department of Environmental Technology, Graduate School of Engineering, Nagoya Institute of Technology, Gokiso-cho, Showa-ku, Nagoya 466-8555, Japan.

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http://dx.doi.org/10.1039/b503434eDOI Listing
August 2005