Hilmar Lapp

Hilmar Lapp

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Hilmar Lapp

Hilmar Lapp

Publications by authors named "Hilmar Lapp"

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A Logical Model of Homology for Comparative Biology.

Syst Biol 2020 Mar;69(2):345-362

Department of Biology and School of Information and Library Sciences, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599-3280, USA.

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http://dx.doi.org/10.1093/sysbio/syz067DOI Listing
March 2020

Divergence in DNA Specificity among Paralogous Transcription Factors Contributes to Their Differential In Vivo Binding.

Cell Syst 2018 Apr 28;6(4):470-483.e8. Epub 2018 Mar 28.

Center for Genomic and Computational Biology, Duke University, Durham, NC 27708, USA; Department of Biostatistics and Bioinformatics, Duke University, Durham, NC 27710, USA; Department of Computer Science, Duke University, Durham, NC 27708, USA; Department of Molecular Genetics and Microbiology, Duke University, Durham, NC 27710, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2018.02.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6008103PMC
April 2018

Developing educational resources for population genetics in R: an open and collaborative approach.

Mol Ecol Resour 2017 Jan 12;17(1):120-128. Epub 2016 Jul 12.

EPHE, PSL Research University, CNRS, UM, SupAgro, IRD, INRA, UMR 5175 CEFE, F-34293, Montpellier, France.

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http://doi.wiley.com/10.1111/1755-0998.12558
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http://dx.doi.org/10.1111/1755-0998.12558DOI Listing
January 2017

apex: phylogenetics with multiple genes.

Mol Ecol Resour 2017 Jan 12;17(1):19-26. Epub 2016 Aug 12.

Duke Center for Genomic and Computational Biology (GCB), Duke University CIEMAS, 101 Science Drive, DUMC Box 3382, Durham, NC, 27708, USA.

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http://dx.doi.org/10.1111/1755-0998.12567DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5215480PMC
January 2017

Towards an integrated ecosystem of R packages for the analysis of population genetic data.

Mol Ecol Resour 2017 Jan;17(1):1-4

Center for Genomic and Computational Biology (GCB), Duke University, 101 Science Drive, Durham, NC, 27708, USA.

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http://dx.doi.org/10.1111/1755-0998.12636DOI Listing
January 2017

INVESTIGATING THE IMPORTANCE OF ANATOMICAL HOMOLOGY FOR CROSS-SPECIES PHENOTYPE COMPARISONS USING SEMANTIC SIMILARITY. Accepted at Pacific Symposium on Biocomputing, 2016.

Pac Symp Biocomput 2016 ;21:132-43

Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA,

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October 2016

The 2015 Bioinformatics Open Source Conference (BOSC 2015).

PLoS Comput Biol 2016 Feb 25;12(2):e1004691. Epub 2016 Feb 25.

Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1004691DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4767331PMC
February 2016

Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy.

Database (Oxford) 2015 13;2015:bav040. Epub 2015 May 13.

Department of Biology, University of South Dakota, Vermillion, SD, USA, Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL, USA and National Evolutionary Synthesis Center, Durham, NC, USA.

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http://dx.doi.org/10.1093/database/bav040DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4429748PMC
December 2015

Using the phenoscape knowledgebase to relate genetic perturbations to phenotypic evolution.

Genesis 2015 Aug 11;53(8):561-71. Epub 2015 Aug 11.

Department of Biology, University of North Carolina, Chapel Hill, North Carolina.

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http://dx.doi.org/10.1002/dvg.22878DOI Listing
August 2015

The Bioinformatics Open Source Conference (BOSC) 2013.

Bioinformatics 2015 Jan 14;31(2):299-300. Epub 2014 Jul 14.

Physical Biosciences Division, Lawrence Berkeley National Laboratory, MS 972R525, Berkeley, CA 94720, USA, Information and Computational Sciences, The James Hutton Institute, Dundee DD2 5DA, UK, Bioinformatics Core, Harvard School of Public Health, Boston, MA 02115, USA, The Computational Biology Institute, George Washington University, Washington, DC 20052, USA, Bioinformatics Department, Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4058 Basel, Switzerland and National Evolutionary Synthesis Center (NESCent), Durham, NC 27705, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btu413DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4287938PMC
January 2015

Finding our way through phenotypes.

PLoS Biol 2015 Jan 6;13(1):e1002033. Epub 2015 Jan 6.

Department of Biology, University of South Dakota, Vermillion, South Dakota, United States of America.

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http://dx.doi.org/10.1371/journal.pbio.1002033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4285398PMC
January 2015

Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex.

J Biomed Semantics 2014 5;5(1):45. Epub 2014 Nov 5.

National Evolutionary Synthesis Center, Durham, NC USA ; Department of Biology, University of North Carolina, Chapel Hill, NC USA.

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http://dx.doi.org/10.1186/2041-1480-5-45DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4236444PMC
November 2014

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

J Biomed Semantics 2014 Feb 5;5(1). Epub 2014 Feb 5.

Database Center for Life Science, Research Organization of Information and Systems, 2-11-16, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.

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http://dx.doi.org/10.1186/2041-1480-5-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3978116PMC
February 2014

What is an anatomy ontology?

Anat Rec (Hoboken) 2013 Dec 11;296(12):1797-9. Epub 2013 Oct 11.

Department of Oral Biology, College of Dentistry, University of Illinois, Chicago.

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http://dx.doi.org/10.1002/ar.22805DOI Listing
December 2013

500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton.

J Appl Ichthyol 2012 Jun 21;28(3):300-305. Epub 2012 May 21.

Department of Biology, 414 East Clark Street, University of South Dakota, Vermillion, South Dakota, United States of America.

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http://dx.doi.org/10.1111/j.1439-0426.2012.01985.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3377363PMC
June 2012

Overview of FEED, the feeding experiments end-user database.

Integr Comp Biol 2011 Aug 22;51(2):215-23. Epub 2011 Jun 22.

Department of Evolutionary Anthropology, Duke University, Durham, NC 27708, USA.

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http://dx.doi.org/10.1093/icb/icr047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3135827PMC
August 2011

Linking big: the continuing promise of evolutionary synthesis.

Evolution 2010 Apr 6;64(4):871-80. Epub 2009 Nov 6.

National Evolutionary Synthesis Center, Suite A200, 2024 West Main Street, Durham, North Carolina 27705, USA.

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http://dx.doi.org/10.1111/j.1558-5646.2009.00892.xDOI Listing
April 2010

Open source tools and toolkits for bioinformatics: significance, and where are we?

Brief Bioinform 2006 Sep 9;7(3):287-96. Epub 2006 Aug 9.

Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720, USA.

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https://academic.oup.com/bib/article-lookup/doi/10.1093/bib/
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http://dx.doi.org/10.1093/bib/bbl026DOI Listing
September 2006

Data and animal management software for large-scale phenotype screening.

Mamm Genome 2006 Apr 4;17(4):288-97. Epub 2006 Apr 4.

Genomics Institute, Novartis Research Foundation, 10675 John Jay Hopkins Drive, San Diego, California 92121, USA.

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http://link.springer.com/10.1007/s00335-005-0145-5
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http://dx.doi.org/10.1007/s00335-005-0145-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1428800PMC
April 2006

Large-scale profiling of Rab GTPase trafficking networks: the membrome.

Mol Biol Cell 2005 Aug 8;16(8):3847-64. Epub 2005 Jun 8.

Department of Cell Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1091/mbc.e05-01-0062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1182321PMC
August 2005

Applications of a rat multiple tissue gene expression data set.

Genome Res 2004 Apr;14(4):742-9

Genomics Institute of the Novartis Research Foundation, San Diego, California 92121, USA.

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http://dx.doi.org/10.1101/gr.2161804DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC383321PMC
April 2004