Publications by authors named "Hideo Matsuda"

96Publications

Anti-Inflammatory and Antioxidative Properties of Isoflavones Provide Renal Protective Effects Distinct from Those of Dietary Soy Proteins against Diabetic Nephropathy.

Mol Nutr Food Res 2020 05 27;64(10):e2000015. Epub 2020 Apr 27.

Division of Food Science and Biotechnology, Laboratory of Molecular Function of Food, Graduate School of Agriculture, Kyoto University, Uji, 611-0011, Japan.

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http://dx.doi.org/10.1002/mnfr.202000015DOI Listing
May 2020

In vivo dynamic analysis of BMP-2-induced ectopic bone formation.

Sci Rep 2020 03 16;10(1):4751. Epub 2020 Mar 16.

Department of Immunology and Cell Biology, Graduate School of Medicine & Frontier Biosciences, Osaka University, Osaka, 565-0871, Japan.

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http://dx.doi.org/10.1038/s41598-020-61825-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7076033PMC
March 2020

Thrombomodulin induces anti-inflammatory effects by inhibiting the rolling adhesion of leukocytes in vivo.

J Pharmacol Sci 2020 May 14;143(1):17-22. Epub 2020 Jan 14.

Department of Immunology and Cell Biology, Graduate School of Medicine and Frontier Biosciences, Osaka University, Osaka 565-0871, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.jphs.2020.01.001DOI Listing
May 2020

URH49 exports mRNA by remodeling complex formation and mediating the NXF1-dependent pathway.

Biochim Biophys Acta Gene Regul Mech 2020 02 7;1863(2):194480. Epub 2020 Jan 7.

Division of Integrated Life Sciences, Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.bbagrm.2020.194480DOI Listing
February 2020

Bovine sperm selection procedure prior to cryopreservation for improvement of post-thawed semen quality and fertility.

J Anim Sci Biotechnol 2019 15;10:91. Epub 2019 Nov 15.

1Advanced Manufacturing Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 807-1 Shuku-machi, Tosu, Saga, 841-0052 Japan.

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http://dx.doi.org/10.1186/s40104-019-0395-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6857337PMC
November 2019

Long non-coding RNA 2310069B03Rik functions as a suppressor of Ucp1 expression under prolonged cold exposure in murine beige adipocytes.

Biosci Biotechnol Biochem 2020 Feb 10;84(2):305-313. Epub 2019 Oct 10.

Laboratory of Molecular Functions of Food, Division of Food Science and Biotechnology, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.

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http://dx.doi.org/10.1080/09168451.2019.1677451DOI Listing
February 2020

Improvement of detection performance of fusion genes from RNA-seq data by clustering short reads.

J Bioinform Comput Biol 2019 06;17(3):1940008

* Graduate School of Information Science and Technology, Osaka University, 1-15 Yamadaoka, Suita, Osaka 565-0871, Japan.

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http://dx.doi.org/10.1142/S0219720019400080DOI Listing
June 2019

Multicolor Imaging with Fluorescent Probes Revealed the Dynamics and Function of Osteoclast Proton Pumps.

ACS Cent Sci 2019 Jun 1;5(6):1059-1066. Epub 2019 May 1.

Department of Material and Life Science, Graduate School of Engineering, Osaka University, Suita, Osaka 565-0871, Japan.

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http://dx.doi.org/10.1021/acscentsci.9b00220DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6598158PMC
June 2019

Guidance for in situ gamma spectrometry intercomparison based on the information obtained through five intercomparisons during the Fukushima mapping project.

J Environ Radioact 2019 Dec 23;210:105938. Epub 2019 Mar 23.

Fukushima Environmental Safety Center, Sector of Fukushima Research and Development, Japan Atomic Energy Agency; 2-2-2 Uchisaiwai-cho, Chiyoda, Tokyo, 100-8577, Japan.

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http://dx.doi.org/10.1016/j.jenvrad.2019.03.014DOI Listing
December 2019

Chromatin 3D Reconstruction from Chromosomal Contacts Using a Genetic Algorithm.

IEEE/ACM Trans Comput Biol Bioinform 2019 Sep-Oct;16(5):1620-1626. Epub 2018 Mar 20.

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http://dx.doi.org/10.1109/TCBB.2018.2814995DOI Listing
March 2020

Roles of Enhancer RNAs in RANKL-induced Osteoclast Differentiation Identified by Genome-wide Cap-analysis of Gene Expression using CRISPR/Cas9.

Sci Rep 2018 05 14;8(1):7504. Epub 2018 May 14.

Department of Immunology and Cell Biology, Graduate School of Medicine and Frontier Biosciences, Osaka University, 2-2 Yamadaoka, Suita, Osaka, 565-0871, Japan.

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http://dx.doi.org/10.1038/s41598-018-25748-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5951944PMC
May 2018

Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells.

BMC Bioinformatics 2018 05 8;19(Suppl 4):89. Epub 2018 May 8.

Graduate School of Information Science and Technology, Osaka University, Yamadaoka 1-5, Suita, Osaka, Japan.

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http://dx.doi.org/10.1186/s12859-018-2072-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5998889PMC
May 2018

A predictive threshold value for the diagnosis of early pregnancy in cows using interferon-stimulated genes in granulocytes.

Theriogenology 2018 Feb 16;107:188-193. Epub 2017 Nov 16.

Laboratory of Veterinary Physiology, Cooperative Department of Veterinary Science, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan; United Graduate School of Veterinary Sciences, Gifu University, Gifu 501-1193, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.theriogenology.2017.11.014DOI Listing
February 2018

Over-expression of PPARα in obese mice adipose tissue improves insulin sensitivity.

Biochem Biophys Res Commun 2017 11 15;493(1):108-114. Epub 2017 Sep 15.

Laboratory of Molecular Function of Food, Division of Food Science and Biotechnology, Graduate School of Agriculture, Kyoto University, Uji, Kyoto, Japan; Research Unit for Physiological Chemistry, Kyoto University, Kyoto, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.bbrc.2017.09.067DOI Listing
November 2017

Bone marrow cavity segmentation using graph-cuts with wavelet-based texture feature.

J Bioinform Comput Biol 2017 Oct 25;15(5):1740004. Epub 2017 Aug 25.

* Graduate School of Information Science and Technology, Osaka University, Yamadaoka 1-5, Suita, Osaka, Japan.

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http://www.worldscientific.com/doi/abs/10.1142/S021972001740
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http://dx.doi.org/10.1142/S0219720017400042DOI Listing
October 2017

A simple comparison of the extrinsic noise in gene expression between native and foreign regulations in Escherichia coli.

Biochem Biophys Res Commun 2017 May 28;486(3):852-857. Epub 2017 Mar 28.

Institute of Biology and Information Science, East China Normal University, 3663 Zhong Shan Road (N), Shanghai 200062, China. Electronic address:

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http://dx.doi.org/10.1016/j.bbrc.2017.03.148DOI Listing
May 2017

Correlation between genome reduction and bacterial growth.

DNA Res 2016 Dec 3;23(6):517-525. Epub 2016 Jul 3.

Graduate School of Life and Environmental Sciences, University of Tsukuba, Ibaraki 305-8572, Japan

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http://dx.doi.org/10.1093/dnares/dsw035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5144675PMC
December 2016

Current Status of Condylomata Acuminata in Pregnant Japanese Women.

Jpn J Infect Dis 2016 Jul 19;69(4):347-9. Epub 2016 Feb 19.

Japan Association of Obstetricians and Gynecologists.

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http://dx.doi.org/10.7883/yoken.JJID.2015.561DOI Listing
July 2016

Proinflammatory cytokine interleukin-1β suppresses cold-induced thermogenesis in adipocytes.

Cytokine 2016 Jan 7;77:107-14. Epub 2015 Nov 7.

Laboratory of Molecular Function of Food, Division of Food Science and Biotechnology, Graduate School of Agriculture, Kyoto University, Uji 611-0011, Japan; Research Unit for Physiological Chemistry, The Center for the Promotion of Interdisciplinary Education and Research, Kyoto University, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.cyto.2015.11.001DOI Listing
January 2016

Detecting shifts in gene regulatory networks during time-course experiments at single-time-point temporal resolution.

J Bioinform Comput Biol 2015 Oct 30;13(5):1543002. Epub 2015 Sep 30.

Graduate School of Information Science and Technology, Osaka University, Yamadaoka 1-5, Suita, Osaka, Japan.

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http://dx.doi.org/10.1142/S0219720015430027DOI Listing
October 2015

Functional specialization in regulation and quality control in thermal adaptive evolution.

Genes Cells 2015 Nov 15;20(11):943-55. Epub 2015 Sep 15.

Graduate School of Information Science and Technology, Osaka University, Osaka, 565-0871, Japan.

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http://doi.wiley.com/10.1111/gtc.12298
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http://dx.doi.org/10.1111/gtc.12298DOI Listing
November 2015

Evolutionary Consequence of a Trade-Off between Growth and Maintenance along with Ribosomal Damages.

PLoS One 2015 20;10(8):e0135639. Epub 2015 Aug 20.

Graduate School of Information Science and Technology, Osaka University, 1-5 Yamadaoka, Suita, Osaka, 565-0871, Japan; ERATO, JST, 1-5 Yamadaoka, Suita, Osaka, 565-0871, Japan; Graduate School of Frontier Biosciences, Osaka University, 1-5 Yamadaoka, Suita, Osaka, 565-0871, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0135639PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4546238PMC
May 2016

Directed evolution of cell size in Escherichia coli.

BMC Evol Biol 2014 Dec 17;14:257. Epub 2014 Dec 17.

Graduate School of Information Science and Technology, Osaka University, 1-5 Yamadaoka, Suita, Osaka, 565-0871, Japan.

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http://dx.doi.org/10.1186/s12862-014-0257-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4279887PMC
December 2014

Metagenome fragment classification based on multiple motif-occurrence profiles.

PeerJ 2014 4;2:e559. Epub 2014 Sep 4.

Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University , Yamadaoka, Suita, Osaka , Japan.

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http://dx.doi.org/10.7717/peerj.559DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4157293PMC
September 2014

Inference of TFRNs (2).

Authors:
Hideo Matsuda

Methods Mol Biol 2014 ;1164:97-107

Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, 1-5 Yamadaoka, Suita, Osaka, 565-0871, Japan,

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http://dx.doi.org/10.1007/978-1-4939-0805-9_9DOI Listing
January 2015

Gene expression scaled by distance to the genome replication site.

Mol Biosyst 2014 Mar 12;10(3):375-9. Epub 2013 Dec 12.

Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki 305-8572, Japan.

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http://dx.doi.org/10.1039/c3mb70254eDOI Listing
March 2014

Successful Prognosis of Brain Abscess during Pregnancy.

J Reprod Infertil 2013 Jul;14(3):152-5

Department of Obstetrics and Gynecology, National Defense Medical College, Saitama, Japan.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3799273PMC
July 2013

Instruction of feeding methods to Japanese pregnant women who cannot be confirmed as HTLV-1 carrier by western blot test.

J Matern Fetal Neonatal Med 2014 Sep 24;27(13):1392-3. Epub 2013 Oct 24.

Department of Obstetrics and Gynecology, Japanese Red Cross Katshushika Maternity Hospital , Tateishi, Katsushika-ku , Japan and.

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http://dx.doi.org/10.3109/14767058.2013.852175DOI Listing
September 2014

Current status of HTLV-1 carrier in Japanese pregnant women.

J Matern Fetal Neonatal Med 2014 Feb 9;27(3):312-3. Epub 2013 Jul 9.

Department of Obstetrics and Gynecology, Japan Association of Obstetricians and Gynecologists , Tokyo , Japan.

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http://dx.doi.org/10.3109/14767058.2013.814631DOI Listing
February 2014

Analysis about the influence on the fetus infected with parvovirus B19 using amniotic erythropoietin and troponin-T.

Arch Gynecol Obstet 2013 Sep 23;288(3):521-5. Epub 2013 Mar 23.

Department of Obstetrics and Gynecology, National Defense Medical College, Saitama, Japan.

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http://link.springer.com/10.1007/s00404-013-2815-y
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http://dx.doi.org/10.1007/s00404-013-2815-yDOI Listing
September 2013

Multilevel comparative analysis of the contributions of genome reduction and heat shock to the Escherichia coli transcriptome.

BMC Genomics 2013 Jan 16;14:25. Epub 2013 Jan 16.

Graduate School of Information Science and Technology, Osaka University, 1-5 Yamadaoka, Suita, Osaka, Japan.

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http://dx.doi.org/10.1186/1471-2164-14-25DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3553035PMC
January 2013

An estimation method for a cellular-state-specific gene regulatory network along tree-structured gene expression profiles.

Gene 2013 Apr 21;518(1):17-25. Epub 2012 Dec 21.

Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, 1-5, Yamadaoka, Suita, Osaka 565-0871, Japan.

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http://dx.doi.org/10.1016/j.gene.2012.11.090DOI Listing
April 2013

The effect of intravenous glucose solutions on neonatal blood glucose levels after cesarean delivery.

J Anesth 2013 Apr 11;27(2):180-5. Epub 2012 Nov 11.

Department of Anesthesiology, National Hospital Organization Tokyo National Hospital, 3-1-1 Takeoka, Kiyose, Tokyo 204-8585, Japan.

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http://dx.doi.org/10.1007/s00540-012-1516-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3622020PMC
April 2013

Oxidative phosphorylation-linked respiration in individual bovine oocytes.

J Reprod Dev 2012 10;58(6):636-41. Epub 2012 Jul 10.

National Livestock Breeding Center, Fukushima 961-8511, Japan.

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http://dx.doi.org/10.1262/jrd.2012-082DOI Listing
May 2013

Can measurement of maternal anti-cytomegalovirus immunoglobulin-M antibody levels be used to screen for cytomegalovirus infection in embryos and fetuses?

J Obstet Gynaecol Res 2013 Jan 4;39(1):166-9. Epub 2012 Jun 4.

Department of Obstetrics and Gynecology, National Defense Medical College Division of Obstetrics and Gynecology, Matsuda Perinatal Clinic Division of Obstetrics and Gynecology, Self-Defense Forces Central Hospital, Tokorozawa, Japan.

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http://dx.doi.org/10.1111/j.1447-0756.2012.01900.xDOI Listing
January 2013

An estimation method for inference of gene regulatory net-work using Bayesian network with uniting of partial problems.

BMC Genomics 2012 17;13 Suppl 1:S12. Epub 2012 Jan 17.

Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, Osaka, Japan.

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http://dx.doi.org/10.1186/1471-2164-13-S1-S12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3303741PMC
June 2012

Perfect Hamming code with a hash table for faster genome mapping.

BMC Genomics 2011 Nov 30;12 Suppl 3:S8. Epub 2011 Nov 30.

Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka Univesity, 1-5 Yamadaoka, Suita, Osaka, Japan.

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http://dx.doi.org/10.1186/1471-2164-12-S3-S8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3333191PMC
November 2011

Inference of S-system models of gene regulatory networks using immune algorithm.

J Bioinform Comput Biol 2011 Dec;9 Suppl 1:75-86

Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, 1-5, Yamadaoka, Suita, Osaka, 565-0871, Japan.

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http://dx.doi.org/10.1142/s0219720011005768DOI Listing
December 2011

Relationships of survival time, productivity and cause of death with telomere lengths of cows produced by somatic cell nuclear transfer.

J Reprod Dev 2011 Oct 10;57(5):572-8. Epub 2011 Jun 10.

National Live Stock Breeding Center, Fukushima 961-8511, Japan.

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http://dx.doi.org/10.1262/jrd.10-174aDOI Listing
October 2011

Successful treatment of fetal intraperitoneal administration of immunoglobulin in a case of fetal hemolytic anemia with 131,072-fold anti-e alloimmunization.

Case Rep Obstet Gynecol 2011 17;2011:157510. Epub 2011 Nov 17.

Department of Obstetrics and Gynecology, National Defense Medical College, 3-2 Namiki Tokorozawa, Saitama 3598513, Japan.

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http://www.hindawi.com/journals/criog/2011/157510/
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http://dx.doi.org/10.1155/2011/157510DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3335459PMC
August 2012

Accumulation of fetal IgG in immunoglobulin injection into the fetal abdominal cavity is proven.

Fetal Diagn Ther 2011 3;29(3):229-32. Epub 2010 Dec 3.

Department of Obstetrics and Gynecology, National Defense Medical College, Saitama, Japan. dr22023 @ ndmc.ac.jp

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https://www.karger.com/Article/FullText/322041
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http://dx.doi.org/10.1159/000322041DOI Listing
August 2011

[Anesthesia management for cesarean section in a patient with placenta percreta].

Masui 2010 Jul;59(7):918-21

Department of Anesthesiology, National Defense Medical College, Tokorozawa 359-8513.

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July 2010

Exploration of potential genomic portraits associated with intrahepatic recurrence in human hepatocellular carcinoma.

Ann Surg Oncol 2010 Dec 13;17(12):3145-54. Epub 2010 Jul 13.

Department of Surgery, Gastroenterological Surgery, Graduate School of Medicine, Osaka University, Osaka, Japan.

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http://dx.doi.org/10.1245/s10434-010-1150-9DOI Listing
December 2010

Development of an ultra-rapid diagnostic method based on heart-type fatty acid binding protein levels in the CSF of CJD patients.

Cell Mol Neurobiol 2010 Oct 25;30(7):991-9. Epub 2010 May 25.

Faculty of Pharmaceutical Sciences, Department of Pharmaceutical Care and Health Sciences, Fukuoka University, Jonan-ku, Fukuoka, Japan.

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http://link.springer.com/content/pdf/10.1007/s10571-010-9529
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http://link.springer.com/10.1007/s10571-010-9529-5
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http://dx.doi.org/10.1007/s10571-010-9529-5DOI Listing
October 2010

Mobile-bearing prosthesis did not improve mid-term clinical results of total knee arthroplasty.

Knee Surg Sports Traumatol Arthrosc 2010 Oct 21;18(10):1311-6. Epub 2010 Apr 21.

Department of Orthopaedic Surgery, Faculty of Medical Sciences, Kyushu University, 3-1-1 Maidashi, Higashiku, Fukuoka 812-8582, Japan.

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http://dx.doi.org/10.1007/s00167-010-1143-zDOI Listing
October 2010

A method for efficient execution of bioinformatics workflows.

Genome Inform 2009 Oct;23(1):139-48

Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, 1-5 Yamadaoka, Suita, Osaka 565-0871, Japan.

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October 2009

[Epidural anesthesia for five caesarian sections in patients with placenta previa percreta combined with placenta accreta].

Masui 2009 Oct;58(10):1261-5

Department of Anesthesia, National Defense Medical College Hospital, Tokorozawa 359-8513.

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October 2009

Successful treatment of gastric cancer in pregnancy.

Taiwan J Obstet Gynecol 2009 Sep;48(3):282-5

Department of Obstetrics and Gynecology, National Defense Medical College, Tokorozawa, Japan.

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http://dx.doi.org/10.1016/S1028-4559(09)60305-3DOI Listing
September 2009

Gendoo: functional profiling of gene and disease features using MeSH vocabulary.

Nucleic Acids Res 2009 Jul 4;37(Web Server issue):W166-9. Epub 2009 Jun 4.

Database Center for Life Science, Research Organization of Information and Systems, Faculty of Engineering Building 12, The University of Tokyo, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.

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http://dx.doi.org/10.1093/nar/gkp483DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2703956PMC
July 2009

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

Authors:
Harukazu Suzuki Alistair R R Forrest Erik van Nimwegen Carsten O Daub Piotr J Balwierz Katharine M Irvine Timo Lassmann Timothy Ravasi Yuki Hasegawa Michiel J L de Hoon Shintaro Katayama Kate Schroder Piero Carninci Yasuhiro Tomaru Mutsumi Kanamori-Katayama Atsutaka Kubosaki Altuna Akalin Yoshinari Ando Erik Arner Maki Asada Hiroshi Asahara Timothy Bailey Vladimir B Bajic Denis Bauer Anthony G Beckhouse Nicolas Bertin Johan Björkegren Frank Brombacher Erika Bulger Alistair M Chalk Joe Chiba Nicole Cloonan Adam Dawe Josee Dostie Pär G Engström Magbubah Essack Geoffrey J Faulkner J Lynn Fink David Fredman Ko Fujimori Masaaki Furuno Takashi Gojobori Julian Gough Sean M Grimmond Mika Gustafsson Megumi Hashimoto Takehiro Hashimoto Mariko Hatakeyama Susanne Heinzel Winston Hide Oliver Hofmann Michael Hörnquist Lukasz Huminiecki Kazuho Ikeo Naoko Imamoto Satoshi Inoue Yusuke Inoue Ryoko Ishihara Takao Iwayanagi Anders Jacobsen Mandeep Kaur Hideya Kawaji Markus C Kerr Ryuichiro Kimura Syuhei Kimura Yasumasa Kimura Hiroaki Kitano Hisashi Koga Toshio Kojima Shinji Kondo Takeshi Konno Anders Krogh Adele Kruger Ajit Kumar Boris Lenhard Andreas Lennartsson Morten Lindow Marina Lizio Cameron Macpherson Norihiro Maeda Christopher A Maher Monique Maqungo Jessica Mar Nicholas A Matigian Hideo Matsuda John S Mattick Stuart Meier Sei Miyamoto Etsuko Miyamoto-Sato Kazuhiko Nakabayashi Yutaka Nakachi Mika Nakano Sanne Nygaard Toshitsugu Okayama Yasushi Okazaki Haruka Okuda-Yabukami Valerio Orlando Jun Otomo Mikhail Pachkov Nikolai Petrovsky Charles Plessy John Quackenbush Aleksandar Radovanovic Michael Rehli Rintaro Saito Albin Sandelin Sebastian Schmeier Christian Schönbach Ariel S Schwartz Colin A Semple Miho Sera Jessica Severin Katsuhiko Shirahige Cas Simons George St Laurent Masanori Suzuki Takahiro Suzuki Matthew J Sweet Ryan J Taft Shizu Takeda Yoichi Takenaka Kai Tan Martin S Taylor Rohan D Teasdale Jesper Tegnér Sarah Teichmann Eivind Valen Claes Wahlestedt Kazunori Waki Andrew Waterhouse Christine A Wells Ole Winther Linda Wu Kazumi Yamaguchi Hiroshi Yanagawa Jun Yasuda Mihaela Zavolan David A Hume Takahiro Arakawa Shiro Fukuda Kengo Imamura Chikatoshi Kai Ai Kaiho Tsugumi Kawashima Chika Kawazu Yayoi Kitazume Miki Kojima Hisashi Miura Kayoko Murakami Mitsuyoshi Murata Noriko Ninomiya Hiromi Nishiyori Shohei Noma Chihiro Ogawa Takuma Sano Christophe Simon Michihira Tagami Yukari Takahashi Jun Kawai Yoshihide Hayashizaki

Nat Genet 2009 May 19;41(5):553-62. Epub 2009 Apr 19.

RIKEN Omics Science Center, RIKEN Yokohama Institute, Kanagawa, Japan.

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http://dx.doi.org/10.1038/ng.375DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711855PMC
May 2009

Safer cordocentesis by new 25-gauge needles.

Fetal Diagn Ther 2008 28;24(3):211-7. Epub 2008 Aug 28.

Department of Obstetrics and Gynecology, National Defense Medical College, Tokorozawa, Japan.

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http://dx.doi.org/10.1159/000151340DOI Listing
January 2009

GO based tissue specific functions of mouse using countable gene expression profiles.

Genome Inform 2007 ;19:154-65

Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University Machikaneyama 1-3, Toyonaka City, Osaka 560-8531, Japan.

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July 2008

BioCompass: a novel functional inference tool that utilizes MeSH hierarchy to analyze groups of genes.

In Silico Biol 2008 ;8(1):53-61

Bio-IT Business Promotion Center, NEC Corporation, 34 Miyukigaoka, Tsukuba, Ibaraki 305-8501, Japan.

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July 2008

A novel, simple, high-throughput method for isolation of genome-wide transposon insertion mutants of Escherichia coli K-12.

Methods Mol Biol 2008 ;416:195-204

Department of Physiological Sciences and Molecular Biology, Fukuoka Dental College, Sawaraku, Fukuoka, Japan.

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http://dx.doi.org/10.1007/978-1-59745-321-9_13DOI Listing
June 2008

Tissue-specific functions based on information content of gene ontology using cap analysis gene expression.

Med Biol Eng Comput 2007 Nov 30;45(11):1029-36. Epub 2007 Oct 30.

Graduate School of Information Science and Technology, Osaka University, Toyonaka, Osaka, Japan.

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http://dx.doi.org/10.1007/s11517-007-0274-yDOI Listing
November 2007

Sudden cardiac arrest during cesarean section due to epidural anaesthesia using ropivacaine: a case report.

Arch Gynecol Obstet 2008 Jan 17;277(1):91-4. Epub 2007 Jul 17.

Department of Obstetrics and Gynecology, National Defense Medical College, 3-2 Namiki, Tokorozawa, Saitama, Japan.

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http://dx.doi.org/10.1007/s00404-007-0410-9DOI Listing
January 2008

Fetal leukemia with umbilical artery embolism and circulatory failure.

Obstet Gynecol 2007 Feb;109(2 Pt2):521-3

Department of Obstetrics and Gynecology, National Defense Medical College, Saitama, Japan.

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http://dx.doi.org/10.1097/01.AOG.0000232508.77614.6dDOI Listing
February 2007

A method for similarity search of genomic positional expression using CAGE.

PLoS Genet 2006 Apr 28;2(4):e44. Epub 2006 Apr 28.

Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, Osaka, Japan.

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http://dx.doi.org/10.1371/journal.pgen.0020044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1449887PMC
April 2006

Intrauterine therapy for parvovirus B19 infected symptomatic fetus using B19 IgG-rich high titer gammaglobulin.

J Perinat Med 2005 ;33(6):561-3

Department of Obstetrics and Gynecology, National Defense Medical College, Tokorozawa, Saitama Prefecture, Japan.

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http://dx.doi.org/10.1515/JPM.2005.100DOI Listing
February 2006

Cerebral edema on MRI in severe preeclamptic women developing eclampsia.

J Perinat Med 2005 ;33(3):199-205

Department of Obstetrics and Gynecology, National Defense Medical College, Japan.

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http://dx.doi.org/10.1515/JPM.2005.037DOI Listing
October 2005

A method for clustering gene expression data based on graph structure.

Genome Inform 2004 ;15(2):151-60

Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan.

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January 2006

Architecture of a grid-enabled research platform with location-transparency for bioinformatics.

Genome Inform 2004 ;15(2):3-12

R&D Department, Bio Science Division, Mitsui Knowledge Industry Co., Ltd., Harmony Tower 21st Floor, 1-32-2 Honcho, Nakano-ku, Tokyo 164-8721, Japan.

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January 2006

Successful management of cervical pregnancy by selective uterine artery embolization: a case report.

J Reprod Med 2004 Dec;49(12):986-8

Department of Obstetrics and Gynecology, National Defense Medical College, Tokorozawa, Japan.

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December 2004

Trisomy 1 in a case of a missed abortion.

J Hum Genet 2004 8;49(7):396-397. Epub 2004 Jun 8.

Department of Obstetrics and Gynecology, Saiseikai Yamagata Hospital, 79-1 Okimachi, Yamagata 990-8545, Japan.

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http://dx.doi.org/10.1007/s10038-004-0164-1DOI Listing
August 2004

Biased biological functions of horizontally transferred genes in prokaryotic genomes.

Nat Genet 2004 Jul 20;36(7):760-6. Epub 2004 Jun 20.

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, 1111 Yata, Mishima, Shizuoka 411-8540, Japan.

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http://dx.doi.org/10.1038/ng1381DOI Listing
July 2004

Intrauterine therapy for a cytomegalovirus-infected symptomatic fetus.

BJOG 2004 Jul;111(7):756-7

Department of Obstetrics and Gynaecology, National Defense Medical College, Tokorozawa, Saitama, Japan.

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http://dx.doi.org/10.1111/j.1471-0528.2004.00179.xDOI Listing
July 2004

Integrative annotation of 21,037 human genes validated by full-length cDNA clones.

Authors:
Tadashi Imanishi Takeshi Itoh Yutaka Suzuki Claire O'Donovan Satoshi Fukuchi Kanako O Koyanagi Roberto A Barrero Takuro Tamura Yumi Yamaguchi-Kabata Motohiko Tanino Kei Yura Satoru Miyazaki Kazuho Ikeo Keiichi Homma Arek Kasprzyk Tetsuo Nishikawa Mika Hirakawa Jean Thierry-Mieg Danielle Thierry-Mieg Jennifer Ashurst Libin Jia Mitsuteru Nakao Michael A Thomas Nicola Mulder Youla Karavidopoulou Lihua Jin Sangsoo Kim Tomohiro Yasuda Boris Lenhard Eric Eveno Yoshiyuki Suzuki Chisato Yamasaki Jun-ichi Takeda Craig Gough Phillip Hilton Yasuyuki Fujii Hiroaki Sakai Susumu Tanaka Clara Amid Matthew Bellgard Maria de Fatima Bonaldo Hidemasa Bono Susan K Bromberg Anthony J Brookes Elspeth Bruford Piero Carninci Claude Chelala Christine Couillault Sandro J de Souza Marie-Anne Debily Marie-Dominique Devignes Inna Dubchak Toshinori Endo Anne Estreicher Eduardo Eyras Kaoru Fukami-Kobayashi Gopal R Gopinath Esther Graudens Yoonsoo Hahn Michael Han Ze-Guang Han Kousuke Hanada Hideki Hanaoka Erimi Harada Katsuyuki Hashimoto Ursula Hinz Momoki Hirai Teruyoshi Hishiki Ian Hopkinson Sandrine Imbeaud Hidetoshi Inoko Alexander Kanapin Yayoi Kaneko Takeya Kasukawa Janet Kelso Paul Kersey Reiko Kikuno Kouichi Kimura Bernhard Korn Vladimir Kuryshev Izabela Makalowska Takashi Makino Shuhei Mano Regine Mariage-Samson Jun Mashima Hideo Matsuda Hans-Werner Mewes Shinsei Minoshima Keiichi Nagai Hideki Nagasaki Naoki Nagata Rajni Nigam Osamu Ogasawara Osamu Ohara Masafumi Ohtsubo Norihiro Okada Toshihisa Okido Satoshi Oota Motonori Ota Toshio Ota Tetsuji Otsuki Dominique Piatier-Tonneau Annemarie Poustka Shuang-Xi Ren Naruya Saitou Katsunaga Sakai Shigetaka Sakamoto Ryuichi Sakate Ingo Schupp Florence Servant Stephen Sherry Rie Shiba Nobuyoshi Shimizu Mary Shimoyama Andrew J Simpson Bento Soares Charles Steward Makiko Suwa Mami Suzuki Aiko Takahashi Gen Tamiya Hiroshi Tanaka Todd Taylor Joseph D Terwilliger Per Unneberg Vamsi Veeramachaneni Shinya Watanabe Laurens Wilming Norikazu Yasuda Hyang-Sook Yoo Marvin Stodolsky Wojciech Makalowski Mitiko Go Kenta Nakai Toshihisa Takagi Minoru Kanehisa Yoshiyuki Sakaki John Quackenbush Yasushi Okazaki Yoshihide Hayashizaki Winston Hide Ranajit Chakraborty Ken Nishikawa Hideaki Sugawara Yoshio Tateno Zhu Chen Michio Oishi Peter Tonellato Rolf Apweiler Kousaku Okubo Lukas Wagner Stefan Wiemann Robert L Strausberg Takao Isogai Charles Auffray Nobuo Nomura Takashi Gojobori Sumio Sugano

PLoS Biol 2004 Jun 20;2(6):e162. Epub 2004 Apr 20.

Integrated Database Group, Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan.

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http://dx.doi.org/10.1371/journal.pbio.0020162DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC393292PMC
June 2004

MaXML: mouse annotation XML.

In Silico Biol 2004 26;4(1):7-15. Epub 2003 Dec 26.

Network Service Solution Business Group, Content Sharing Service Business Unit, NTT Software Corporation, Yokohama, Kanagawa, Japan.

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December 2004

Graph-based clustering for finding distant relationships in a large set of protein sequences.

Bioinformatics 2004 Jan;20(2):243-52

Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan.

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http://dx.doi.org/10.1093/bioinformatics/btg397DOI Listing
January 2004

FREP: a database of functional repeats in mouse cDNAs.

Nucleic Acids Res 2004 Jan;32(Database issue):D471-5

Biomedical Knowledge Discovery Team, Bioinformatics Group, RIKEN Genomic Sciences Center (GSC), RIKEN Yokohama Institute, Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.

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http://dx.doi.org/10.1093/nar/gkh123DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC308857PMC
January 2004

Development and evaluation of an automated annotation pipeline and cDNA annotation system.

Genome Res 2003 Jun;13(6B):1542-51

Laboratory for Genome Exploration Research Group, RIKEN Genomic Sciences Center (GSC), RIKEN Yokohama Institute, Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.

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http://dx.doi.org/10.1101/gr.992803DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC403710PMC
June 2003

Mouse proteome analysis.

Genome Res 2003 Jun;13(6B):1335-44

EMBL Outstation-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SD, UK.

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http://dx.doi.org/10.1101/gr.978703DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC403658PMC
June 2003

Exploration of novel motifs derived from mouse cDNA sequences.

Genome Res 2002 Mar;12(3):367-78

Department of Informatics and Mathematical Science, Graduate School of Engineering Science, Osaka University, Toyonaka 560-8531, Japan.

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http://dx.doi.org/10.1101/gr.193702DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC155289PMC
March 2002