Publications Authored by Heui-Soo Kim

Genome and evolution of the shade-requiring medicinal herb Panax ginseng.

Plant Biotechnol J 2018 Nov 25;16(11):1904-1917. Epub 2018 May 25.

Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.

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November 2018

MicroRNA-552 links Wnt signaling to p53 tumor suppressor in colorectal cancer.

Authors:

Bomi Kwak Dong Uk Kim Tae Oh Kim Heui-Soo Kim Sang-Woo Kim

Int J Oncol 2018 Oct 26;53(4):1800-1808. Epub 2018 Jul 26.

Department of Biological Sciences, Pusan National University, Pusan 46241, Republic of Korea.

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October 2018

Induction of Apoptosis by Citrus unshiu Peel in Human Breast Cancer MCF-7 Cells: Involvement of ROS-Dependent Activation of AMPK.

Authors:

Min Yeong Kim Hyun Hwang Bo Eun Ok Choi Da He Kwon Hong Jae Kim Kyu Im Ahn Seon Yeong Ji Jin-Woo Jeong Shin-Hyung Park Su-Hyun Hong Gi-Young Kim Cheol Park Heui-Soo Kim Sung-Kwon Moon Seok-Joong Yun Wun Jae Kim Yung Hyun Choi

Biol Pharm Bull 2018 ;41(5):713-721

Department of Biochemistry, Dongeui University College of Korean Medicine.

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September 2018

Multiplex PCR using YeaD and 16S rRNA gene to identify major pathogens in vibriosis of Litopenaeus vannamei.

Authors:

Yeong-Jong Han Ara Jo So-Won Kim Hee-Eun Lee Young Chul Kim Hyun Do Jeong Yung Hyun Choi Suhkmann Kim Hee-Jae Cha Heui-Soo Kim

Genes Genomics 2018 Sep 4. Epub 2018 Sep 4.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan, 46241, Republic of Korea.

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September 2018

Extract Attenuates Interleukin-1β-Induced Oxidative Stress and Inflammatory Response in Chondrocytes by Suppressing the Activation of NF-κB, p38 MAPK, and PI3K/Akt.

Authors:

Cheol Park Jin-Woo Jeong Dae-Sung Lee Mi-Jin Yim Jeong Min Lee Min Ho Han Suhkmann Kim Heui-Soo Kim Gi-Young Kim Eui Kyun Park You-Jin Jeon Hee-Jae Cha Yung Hyun Choi

Int J Mol Sci 2018 Aug 7;19(8). Epub 2018 Aug 7.

Anti-Aging Research Center and Blue-Bio Industry RIC, Dong-eui University, Busan 47227, Korea.

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August 2018

Identification of transposable elements fused in the exonic region of the olive flounder genome.

Authors:

Gyu-Hwi Nam Jeong-An Gim Anshuman Mishra Kung Ahn Suhkmann Kim Do-Hyung Kim Hee-Jae Cha Yung Hyun Choi Chan-Il Park Heui-Soo Kim

Genes Genomics 2018 07 9;40(7):707-713. Epub 2018 Mar 9.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan, 46241, Republic of Korea.

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July 2018

Current Challenges of Infection and Effective Molecular, Cellular, and Environmental Control Methods in Aquaculture.

Authors:

Anshuman Mishra Gyu-Hwi Nam Jeong-An Gim Hee-Eun Lee Ara Jo Heui-Soo Kim

Mol Cells 2018 Jun 10;41(6):495-505. Epub 2018 May 10.

Institute of Systems Biology, Pusan National University, Busan 46241, Korea.

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June 2018

Activation of the Nrf2/HO-1 Signaling Pathway Contributes to the Protective Effects of Extract against Oxidative Stress-Induced DNA Damage and Apoptosis in SW1353 Human Chondrocytes.

Authors:

Cheol Park Su Hyun Hong Soon Shik Shin Dae-Sung Lee Min Ho Han Hee-Jae Cha Suhkmann Kim Heui-Soo Kim Gi-Young Kim Eui Kyun Park You-Jin Jeon Yung Hyun Choi

Int J Environ Res Public Health 2018 06 5;15(6). Epub 2018 Jun 5.

Department of Biochemistry, Dongeui University College of Korean Medicine, Busan 47227, Korea.

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June 2018

Identification of novel CYP4F2 genetic variants exhibiting decreased catalytic activity in the conversion of arachidonic acid to 20-hydroxyeicosatetraenoic acid (20-HETE).

Authors:

Woo-Young Kim Su-Jun Lee Jungki Min Kyung-Suk Oh Dong-Hyun Kim Heui-Soo Kim Jae-Gook Shin

Prostaglandins Leukot Essent Fatty Acids 2018 Apr 11;131:6-13. Epub 2018 Mar 11.

Department of Pharmacology and Pharmacogenomics Research Center; Department of Clinical Pharmacology, Inje University College of Medicine, Inje University Busan Paik Hospital, 633-165 Gaegum-dong, Jin-gu, Busan 614-735, South Korea. Electronic address:

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April 2018

Spermidine Protects against Oxidative Stress in Inflammation Models Using Macrophages and Zebrafish.

Authors:

Jin-Woo Jeong Hee-Jae Cha Min Ho Han Su Jung Hwang Dae-Sung Lee Jong Su Yoo Il-Whan Choi Suhkmann Kim Heui-Soo Kim Gi-Young Kim Su Hyun Hong Cheol Park Hyo-Jong Lee Yung Hyun Choi

Biomol Ther (Seoul) 2018 Mar;26(2):146-156

Anti-Aging Research Center and Department of Biochemistry, Dongeui University College of Korean Medicine, Busan 47227, Republic of Korea.

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March 2018

Ty3/Gypsy retrotransposons in the Pacific abalone Haliotis discus hannai: characterization and use for species identification in the genus Haliotis.

Authors:

Sung-Il Lee Jeong-An Gim Min-Ji Lim Heui-Soo Kim Bo-Hye Nam Nam-Soo Kim

Genes Genomics 2018 02 13;40(2):177-187. Epub 2017 Oct 13.

Institute of Biotechnology and Bioscience, Kangwon National University, Chuncheon, 24341, Republic of Korea.

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February 2018

An efficient and tunable parameter to improve variant calling for whole genome and exome sequencing data.

Authors:

Yong Ju Ahn Kesavan Markkandan In-Pyo Baek Seyoung Mun Wooseok Lee Heui-Soo Kim Kyudong Han

Genes Genomics 2018 01 29;40(1):39-47. Epub 2017 Aug 29.

Department of Nanobiomedical Science & BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan, Republic of Korea.

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January 2018

Activity analysis of LTR12C as an effective regulatory element of the RAE1 gene.

Authors:

Yi-Deun Jung Hee-Eun Lee Ara Jo Imai Hiroo Hee-Jae Cha Heui-Soo Kim

Gene 2017 Nov 1;634:22-28. Epub 2017 Sep 1.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea; Institute of Systems Biology, Pusan National University, Busan 46241, Republic of Korea. Electronic address:

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November 2017

Identification and Expression Analyses of Equine Endogenous Retroviruses in Horses.

Authors:

Jeong-An Gim Heui-Soo Kim

Mol Cells 2017 Oct 17;40(10):796-804. Epub 2017 Oct 17.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 46241, Korea.

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October 2017

Evolutionary conservation and expression of miR-10a-3p in olive flounder and rock bream.

Authors:

Ara Jo Jennifer Im Hee-Eun Lee Dongmin Jang Gyu-Hwi Nam Anshuman Mishra Woo-Jin Kim Won Kim Hee-Jae Cha Heui-Soo Kim

Gene 2017 Sep 8;628:16-23. Epub 2017 Jul 8.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 46241, Republic of Korea; Genetic Engineering Institute, Pusan National University, Busan 46241, Republic of Korea. Electronic address:

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September 2017

Genomic Analysis of miR-21-3p and Expression Pattern with Target Gene in Olive Flounder.

Authors:

Ara Jo Hee-Eun Lee Heui-Soo Kim

Genomics Inform 2017 Sep 28;15(3):98-107. Epub 2017 Sep 28.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 46241, Korea.

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September 2017

Induction of p53-Independent Apoptosis and G1 Cell Cycle Arrest by Fucoidan in HCT116 Human Colorectal Carcinoma Cells.

Authors:

Hye Young Park Shin-Hyung Park Jin-Woo Jeong Dahye Yoon Min Ho Han Dae-Sung Lee Grace Choi Mi-Jin Yim Jeong Min Lee Do-Hyung Kim Gi-Young Kim Il-Whan Choi Suhkmann Kim Heui-Soo Kim Hee-Jae Cha Yung Hyun Choi

Mar Drugs 2017 May 30;15(6). Epub 2017 May 30.

Department of Biochemistry, Dong-Eui University College of Korean Medicine, Busan 47227, Korea.

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May 2017

Identification and Expression of Equine MER-Derived miRNAs.

Authors:

Jeong-An Gim Heui-Soo Kim

Mol Cells 2017 Apr 21;40(4):262-270. Epub 2017 Mar 21.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 46241, Korea.

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April 2017

Fucoidan Induces ROS-Dependent Apoptosis in 5637 Human Bladder Cancer Cells by Downregulating Telomerase Activity via Inactivation of the PI3K/Akt Signaling Pathway.

Authors:

Min Ho Han Dae-Sung Lee Jin-Woo Jeong Su-Hyun Hong Il-Whan Choi Hee-Jae Cha Suhkmann Kim Heui-Soo Kim Cheol Park Gi-Young Kim Sung-Kwon Moon Wun-Jae Kim Yung Hyun Choi

Drug Dev Res 2017 02 21;78(1):37-48. Epub 2016 Sep 21.

Natural Products Research Team, Marine Biodiversity Institute of Korea, Seocheon, 325-902, Republic of Korea.

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February 2017

Integrated late onset Alzheimer's disease (LOAD) susceptibility genes: Cholesterol metabolism and trafficking perspectives.

Authors:

Hee Kim Dong Jeong-An Gim Seung Hyeon Yeo Heui-Soo Kim

Gene 2017 Jan 20;597:10-16. Epub 2016 Oct 20.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 46241, Republic of Korea; Genetic Engineering Institute, Pusan National University, Busan 46241, Republic of Korea. Electronic address:

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January 2017

Role of transposable elements in genomic rearrangement, evolution, gene regulation and epigenetics in primates.

Authors:

Hee-Eun Lee Selvam Ayarpadikannan Heui-Soo Kim

Genes Genet Syst 2015 15;90(5):245-57. Epub 2016 Jan 15.

Department of Biological Sciences, College of Natural Sciences, Pusan National University.

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November 2016

Optimizing Hybrid de Novo Transcriptome Assembly and Extending Genomic Resources for Giant Freshwater Prawns (Macrobrachium rosenbergii): The Identification of Genes and Markers Associated with Reproduction.

Authors:

Hyungtaek Jung Byung-Ha Yoon Woo-Jin Kim Dong-Wook Kim David A Hurwood Russell E Lyons Krishna R Salin Heui-Soo Kim Ilseon Baek Vincent Chand Peter B Mather

Int J Mol Sci 2016 May 7;17(5). Epub 2016 May 7.

Earth, Environmental and Biological Sciences, Science and Engineering Faculty, Queensland University of Technology, Queensland 4000, Australia.

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May 2016

Association of DNA methylation and monoamine oxidase A gene expression in the brains of different dog breeds.

Authors:

JungWoo Eo Hee-Eun Lee Gyu-Hwi Nam Yun-Jeong Kwon Yuri Choi Bong-Hwan Choi Jae-Won Huh Minkyu Kim Sang-Eun Lee Bohyun Seo Heui-Soo Kim

Gene 2016 Apr 16;580(2):177-82. Epub 2016 Jan 16.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea. Electronic address:

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April 2016

Gene structure variation in segmental duplication block C of human chromosome 7q 11.23 during primate evolution.

Authors:

Yun-Ji Kim Kung Ahn Jeong-An Gim Man Hwan Oh Kyudong Han Heui-Soo Kim

Gene 2015 Dec 18;573(2):285-95. Epub 2015 Jul 18.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea. Electronic address:

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December 2015

Identification and expression analysis of human endogenous retrovirus Y (HERV-Y) in various human tissues.

Authors:

Jeong-An Gim Kyudong Han Heui-Soo Kim

Arch Virol 2015 Sep 20;160(9):2161-8. Epub 2015 Jun 20.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan, 609-735, Republic of Korea.

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September 2015

Molecular characterization and expression analysis of mouse epidermal growth factor-like domain 8.

Authors:

Ik-Jin Song Muhammad Ikram Fazli Subhan Da-Jeong Choi Ja-Rang Lee Heui-Soo Kim Young-Tak Lim Sik Yoon

Int J Mol Med 2015 Aug 18;36(2):541-50. Epub 2015 Jun 18.

Department of Anatomy and Medical Research Institute, Pusan National University School of Medicine, Yangsan, Gyeongsangnam-do 626-870, Republic of Korea.

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August 2015

The combination of methylsulfonylmethane and tamoxifen inhibits the Jak2/STAT5b pathway and synergistically inhibits tumor growth and metastasis in ER-positive breast cancer xenografts.

Authors:

Nipin S P Pramod Darvin Young Beom Yoo Youn Hee Joung Dong Young Kang Don Nam Kim Tae Sook Hwang Sang Yoon Kim Wan Seop Kim Hak Kyo Lee Byung Wook Cho Heui Soo Kim Kyung Do Park Jong Hwan Park Soung Hoon Chang Young Mok Yang

BMC Cancer 2015 Jun 19;15:474. Epub 2015 Jun 19.

Department of Pathology, School of Medicine, and Institute of Biomedical Science and Technology, Konkuk University, Seoul, 143-701, Korea.

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June 2015

HEpD: a database describing epigenetic differences between Thoroughbred and Jeju horses.

Authors:

Jeong-An Gim Sugi Lee Dae-Soo Kim Kwang-Seuk Jeong Chang Pyo Hong Jin-Han Bae Jae-Woo Moon Yong-Seok Choi Byung-Wook Cho Hwan-Gue Cho Jong Bhak Heui-Soo Kim

Gene 2015 Apr 28;560(1):83-8. Epub 2015 Jan 28.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea; Genetic Engineering Institute, Pusan National University, Busan 609-735, Republic of Korea. Electronic address:

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April 2015

Transposable element-driven transcript diversification and its relevance to genetic disorders.

Authors:

Selvam Ayarpadikannan Hee-Eun Lee Kyudong Han Heui-Soo Kim

Gene 2015 Mar 21;558(2):187-94. Epub 2015 Jan 21.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea. Electronic address:

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March 2015

Genome-wide analysis of DNA methylation before-and after exercise in the thoroughbred horse with MeDIP-Seq.

Mol Cells 2015 Mar 30;38(3):210-20. Epub 2015 Jan 30.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Korea.

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March 2015

Chimpanzee-specific endogenous retrovirus generates genomic variations in the chimpanzee genome.

Authors:

Seyoung Mun Jungnam Lee Yun-Ji Kim Heui-Soo Kim Kyudong Han

PLoS One 2014 2;9(7):e101195. Epub 2014 Jul 2.

Department of Nanobiomedical Science, Dankook University, Cheonan, Republic of Korea; BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan, Republic of Korea; DKU-Theragen institute for NGS analysis (DTiNa), Cheonan, Republic of Korea.

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February 2015

Identification of human-specific AluS elements through comparative genomics.

Authors:

Jae Lee Yun-Ji Kim Seyoung Mun Heui-Soo Kim Kyudong Han

Gene 2015 Jan 7;555(2):208-16. Epub 2014 Nov 7.

Department of Nanobiomedical Science & BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan 330-714, Republic of Korea; DKU-Theragen Institute for NGS Analysis (DTiNa), Cheonan 330-714, Republic of Korea. Electronic address:

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January 2015

Genome-Wide Identification and Classification of MicroRNAs Derived from Repetitive Elements.

Authors:

Jeong-An Gim Hong-Seok Ha Kung Ahn Dae-Soo Kim Heui-Soo Kim

Genomics Inform 2014 Dec 31;12(4):261-7. Epub 2014 Dec 31.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Korea.

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December 2014

Repeat polymorphism analysis for examining genetic variability and the implications for specific traits in dog breeds.

Authors:

Jungwoo Eo Heui-Soo Kim

Genes Genet Syst 2013 ;88(5):273-8

Department of Biological Sciences, College of Natural Sciences, Pusan National University.

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November 2014

Short communication: expression profiles of endogenous retroviral envelopes in Macaca mulatta (rhesus monkey).

Authors:

Jungwoo Eo Hee-Jae Cha Hiroo Imai Hirohisa Hirai Heui-Soo Kim

AIDS Res Hum Retroviruses 2014 Oct 22;30(10):996-1000. Epub 2014 Jul 22.

1 Department of Biological Sciences, College of Natural Sciences, Pusan National University , Busan, Republic of Korea.

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October 2014

Elevation of human ERV3-1 env protein expression in colorectal cancer.

Authors:

Seung-Hyun Lee Yun-Jeong Kang Jin-Ok Jo Mee Sun Ock Kyung-Wan Baek Jungwoo Eo Woo Jae Lee Yung Hyun Choi Wun-Jae Kim Sun-Hee Leem Heui-Soo Kim Hee-Jae Cha

J Clin Pathol 2014 Sep;67(9):840-4

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September 2014

Copy number deletion has little impact on gene expression levels in racehorses.

Authors:

Kyung-Do Park Hyeongmin Kim Jae Yeon Hwang Chang-Kyu Lee Kyoung-Tag Do Heui-Soo Kim Young-Mok Yang Young-Jun Kwon Jaemin Kim Hyeon Jeong Kim Ki-Duk Song Jae-Don Oh Heebal Kim Byung-Wook Cho Seoae Cho Hak-Kyo Lee

Asian-Australas J Anim Sci 2014 Sep;27(9):1345-54

Genomic Informatics Center, Hankyong National University, Anseong 456-749, Korea.

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September 2014

The impact of transposable elements in genome evolution and genetic instability and their implications in various diseases.

Authors:

Selvam Ayarpadikannan Heui-Soo Kim

Genomics Inform 2014 Sep 30;12(3):98-104. Epub 2014 Sep 30.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Korea.

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September 2014

Transcriptional expression changes of glucose metabolism genes after exercise in thoroughbred horses.

Authors:

Jeong-An Gim Selvam Ayarpadikannan Jungwoo Eo Yun-Jeong Kwon Yuri Choi Hak-Kyo Lee Kyung-Do Park Young Mok Yang Byung-Wook Cho Heui-Soo Kim

Gene 2014 Aug 24;547(1):152-8. Epub 2014 Jun 24.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea. Electronic address:

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August 2014

Novel variable number of tandem repeats of gibbon MAOA gene and its evolutionary significance.

Authors:

Yuri Choi Yi-Deun Jung Selvam Ayarpadikannan Akihiko Koga Hiroo Imai Hirohisa Hirai Christian Roos Heui-Soo Kim

Genome 2014 Aug;57(8):427-32

a Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea.

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August 2014

Genetic markers for diagnosis and pathogenesis of Alzheimer's disease.

Authors:

Dong Hee Kim Seung Hyeon Yeo Jeong-Min Park Ji Ye Choi Tae-Hee Lee Soon Yong Park Mee Sun Ock Jungwoo Eo Heui-Soo Kim Hee-Jae Cha

Gene 2014 Jul 15;545(2):185-93. Epub 2014 May 15.

Department of Parasitology and Genetics, Busan, Republic of Korea; Institute for Medical Science, Kosin University College of Medicine, Busan, Republic of Korea. Electronic address:

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July 2014

N-benzyl-N-methyldecan-1-amine, a phenylamine derivative isolated from garlic cloves, induces G2/M phase arrest and apoptosis in U937 human leukemia cells.

Authors:

Jin-Woo Jeong Sejin Park Cheol Park Young-Chae Chang Dong-Oh Moon Sung Ok Kim Gi-Young Kim Hee-Jae Cha Heui-Soo Kim Young-Whan Choi Wun-Jae Kim Young Hyun Yoo Yung Hyun Choi

Oncol Rep 2014 Jul 23;32(1):373-81. Epub 2014 May 23.

Department of Biochemistry, Dongeui University College of Oriental Medicine, Busan 614‑052, Republic of Korea.

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July 2014

Genome-wide analysis of DNA methylation patterns in horse.

BMC Genomics 2014 Jul 15;15:598. Epub 2014 Jul 15.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea.

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July 2014

No expression of porcine endogenous retrovirus after pig to monkey xenotransplantation.

Authors:

Seongsoo Hwang Yi-Deun Jung Kahee Cho Sun-A Ock Keon-Bong Oh Heui-Soo Kim Ik-Jin Yun Curie Ahn Jin-Ki Park Seoki Im

Lab Anim Res 2014 Jun 23;30(2):90-3. Epub 2014 Jun 23.

National Institute of Animal Science, Suwon, Korea.

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June 2014

Breed Differences in Dopamine Receptor D4 Gene (DRD4) in Horses.

Authors:

Yusuke Hori Takatoshi Ozaki Yoshimitsu Yamada Teruaki Tozaki Heui-Soo Kim Ayaka Takimoto Maiko Endo Noboru Manabe Miho Inoue-Murayama Kazuo Fujita

J Equine Sci 2013 30;24(3):31-6. Epub 2013 Sep 30.

Department of Psychology, Graduate School of Letters, Kyoto University, Sakyo, Kyoto 606-8501, Japan.

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May 2014

Expression of human endogenous retrovirus env genes in the blood of breast cancer patients.

Authors:

Dong-Won Rhyu Yun-Jeong Kang Mee-Sun Ock Jung-Woo Eo Yung-Hyun Choi Wun-Jae Kim Sun-Hee Leem Joo-Mi Yi Heui-Soo Kim Hee-Jae Cha

Int J Mol Sci 2014 May 26;15(6):9173-83. Epub 2014 May 26.

Department of Parasitology and Genetics, Kosin University College of Medicine, Busan 602-072, Korea.

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May 2014

Combination of AG490, a Jak2 inhibitor, and methylsulfonylmethane synergistically suppresses bladder tumor growth via the Jak2/STAT3 pathway.

Authors:

Youn Hee Joung Yoon Mi Na Young Bum Yoo Pramod Darvin Nipin Sp Dong Young Kang Sang Yoon Kim Hong Sup Kim Yoon Hee Choi Hak Kyo Lee Kyung Do Park Byung Wook Cho Heui Soo Kim Jong Hwan Park Young Mok Yang

Int J Oncol 2014 Mar 8;44(3):883-95. Epub 2014 Jan 8.

Department of Pathology, School of Medicine, Institute of Biomedical Science and Technology, Konkuk University, Seoul 143-701, Republic of Korea.

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March 2014

Retroelements: molecular features and implications for disease.

Authors:

Yi-Deun Jung Kung Ahn Yun-Ji Kim Jin-Han Bae Ja-Rang Lee Heui-Soo Kim

Genes Genet Syst 2013 ;88(1):31-43

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea.

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January 2014

Promoter activity analysis and methylation characterization of LTR elements of PERVs in NIH miniature pig.

Authors:

Yi-Deun Jung Ja-Rang Lee Yun-Ji Kim Hong-Seok Ha Keon-Bong Oh Gi-Sun Im Bong-Hwan Choi Heui-Soo Kim

Genes Genet Syst 2013 ;88(2):135-42

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea.

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January 2014

Human ERV3-1 env protein expression in various human tissues and tumours.

Authors:

Yun-Jeong Kang Jin-Ok Jo Mee Sun Ock Hee-Kyung Chang Kyung-Wan Baek Ja-Rang Lee Yung Hyun Choi Wun-Jae Kim Sun-Hee Leem Heui-Soo Kim Hee-Jae Cha

J Clin Pathol 2014 Jan 16;67(1):86-90. Epub 2013 Sep 16.

Departments of Parasitology and Genetics, Kosin University College of Medicine, , Busan, Republic of Korea.

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January 2014

Minke whale genome and aquatic adaptation in cetaceans.

Nat Genet 2014 Jan 24;46(1):88-92. Epub 2013 Nov 24.

1] Korea Institute of Ocean Science and Technology, Ansan, Republic of Korea. [2] Department of Marine Biotechnology, University of Science and Technology, Daejeon, Republic of Korea.

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January 2014

Application of DNA barcoding for identification of freshwater carnivorous fish diets: Is number of prey items dependent on size class for Micropterus salmoides?

Authors:

Hyunbin Jo Jeong-An Gim Kwang-Seuk Jeong Heui-Soo Kim Gea-Jae Joo

Ecol Evol 2014 Jan 23;4(2):219-29. Epub 2013 Dec 23.

Department of Biological Sciences, Pusan National University Busan, 609-735, South Korea.

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January 2014

Selection of new appropriate reference genes for RT-qPCR analysis via transcriptome sequencing of cynomolgus monkeys (Macaca fascicularis).

Authors:

Sang-Je Park Young-Hyun Kim Jae-Won Huh Sang-Rae Lee Sang-Hyun Kim Sun-Uk Kim Ji-Su Kim Kang-Jin Jeong Kyoung-Min Kim Heui-Soo Kim Kyu-Tae Chang

PLoS One 2013 15;8(4):e60758. Epub 2013 Apr 15.

National Primate Research Center, Korea Research Institute of Bioscience and Biotechnology, Chungbuk, Republic of Korea.

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November 2013

Human-specific HERV-K insertion causes genomic variations in the human genome.

Authors:

Wonseok Shin Jungnam Lee Seung-Yeol Son Kung Ahn Heui-Soo Kim Kyudong Han

PLoS One 2013 12;8(4):e60605. Epub 2013 Apr 12.

Department of Nanobiomedical Science and WCU Research Center, Dankook University, Cheonan, Republic of Korea.

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October 2013

Hwanggeumchal sorghum extract enhances BMP7 and GH signaling through the activation of Jak2/STAT5B in MC3T3‑E1 osteoblastic cells.

Authors:

Youn Hee Joung Eun Joung Lim Pramod Darvin Ju Woong Jang Kyung Do Park Hak Kyo Lee Heui Soo Kim Byung Wook Cho Taekyu Park Sumi Chung Jong Hwan Park Young Mok Yang

Mol Med Rep 2013 Sep 18;8(3):891-6. Epub 2013 Jul 18.

Department of Pathology, School of Medicine, Institute of Biomedical Science and Technology, Konkuk University, Seoul 143‑701, Republic of Korea.

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September 2013

Structure and Expression Analyses of SVA Elements in Relation to Functional Genes.

Authors:

Yun-Jeong Kwon Yuri Choi Jungwoo Eo Yu-Na Noh Jeong-An Gim Yi-Deun Jung Ja-Rang Lee Heui-Soo Kim

Genomics Inform 2013 Sep 30;11(3):142-8. Epub 2013 Sep 30.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Korea.

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September 2013

Selection of appropriate reference genes for RT-qPCR analysis in a streptozotocin-induced Alzheimer's disease model of cynomolgus monkeys (Macaca fascicularis).

Authors:

Sang-Je Park Young-Hyun Kim Youngjeon Lee Kyoung-Min Kim Heui-Soo Kim Sang-Rae Lee Sun-Uk Kim Sang-Hyun Kim Ji-Su Kim Kang-Jin Jeong Kyoung-Min Lee Jae-Won Huh Kyu-Tae Chang

PLoS One 2013 14;8(2):e56034. Epub 2013 Feb 14.

National Primate Research Center, Korea Research Institute of Bioscience and Biotechnology, Ochang, Chungbuk, Republic of Korea.

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August 2013

Alu-related transcript of TJP2 gene as a marker for colorectal cancer.

Authors:

Yun-Ji Kim Yi-Deun Jung Tae-Oh Kim Heui-Soo Kim

Gene 2013 Jul 20;524(2):268-74. Epub 2013 Apr 20.

Department of Nanobiomedical Science & WCU Research Center, Dankook University, Cheonan 330-714, Republic of Korea.

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July 2013

Hexane extract of aged black garlic reduces cell proliferation and attenuates the expression of ICAM-1 and VCAM‑1 in TNF-α-activated human endometrial stromal cells.

Authors:

Ki-Hyung Kim Jin Kyeong Park Young-Whan Choi Youn-Han Kim Eun Na Lee Ja-Rang Lee Heui-Soo Kim Sun-Yong Baek Bong-Seon Kim Kyu-Sup Lee Sik Yoon

Int J Mol Med 2013 Jul 25;32(1):67-78. Epub 2013 Apr 25.

Department of Obstetrics and Gynecology, Pusan National University School of Medicine, Busan 602-739, Republic of Korea.

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July 2013

Peeling back the evolutionary layers of molecular mechanisms responsive to exercise-stress in the skeletal muscle of the racing horse.

DNA Res 2013 Jun 11;20(3):287-98. Epub 2013 Apr 11.

Department of Agricultural Biotechnology, Animal Biotechnology Major, and Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Republic of Korea.

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June 2013

Selection of internal reference genes for normalization of quantitative reverse transcription polymerase chain reaction (qRT-PCR) analysis in the canine brain and other organs.

Authors:

Sang-Je Park Jae-Won Huh Young-Hyun Kim Sang-Rae Lee Sang-Hyun Kim Sun-Uk Kim Heui-Soo Kim Min Kyu Kim Kyu-Tae Chang

Mol Biotechnol 2013 May;54(1):47-57

National Primate Research Center, Korea Research Institute of Bioscience and Biotechnology, Ochang, Chungbuk 363-883, Republic of Korea.

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May 2013

A New Exon Derived from a Mammalian Apparent LTR Retrotransposon of the SUPT16H Gene.

Authors:

Min-In Bae Yun-Ji Kim Ja-Rang Lee Yi-Deun Jung Heui-Soo Kim

Int J Genomics 2013 10;2013:387594. Epub 2013 Mar 10.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea.

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May 2013

MSM enhances GH signaling via the Jak2/STAT5b pathway in osteoblast-like cells and osteoblast differentiation through the activation of STAT5b in MSCs.

Authors:

Youn Hee Joung Eun Joung Lim Pramod Darvin So Chung Chung Ju Woong Jang Kyung Do Park Hak Kyo Lee Heui Soo Kim Taekyu Park Young Mok Yang

PLoS One 2012 11;7(10):e47477. Epub 2012 Oct 11.

Department of Pathology, School of Medicine, Institute of Biomedical Science and Technology, Konkuk University, Seoul, Republic of Korea.

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February 2013

Identification and promoter analysis of PERV LTR subtypes in NIH-miniature pig.

Authors:

Yi-Deun Jung Hong-Seok Ha Sang-Je Park Keon-Bong Oh Gi-Sun Im Tae-Hun Kim Hwan-Hoo Seong Heui-Soo Kim

Mol Cells 2013 Feb 21;35(2):99-105. Epub 2013 Feb 21.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Korea.

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February 2013

The novel MER transposon-derived miRNAs in human genome.

Authors:

Kung Ahn Jeong-An Gim Hong-Seok Ha Kyudong Han Heui-Soo Kim

Gene 2013 Jan 25;512(2):422-8. Epub 2012 Aug 25.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea.

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January 2013

Radiation-induced human endogenous retrovirus (HERV)-R env gene expression by epigenetic control.

Authors:

Ja-Rang Lee Kung Ahn Yun-Ji Kim Yi-Deun Jung Heui-Soo Kim

Radiat Res 2012 Nov 24;178(5):379-84. Epub 2012 Sep 24.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea.

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November 2012

Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq.

BMC Genomics 2012 Sep 12;13:473. Epub 2012 Sep 12.

Department of Biotechnology, Hankyong National University, Anseong, Republic of Korea.

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September 2012

Intron Retention and TE Exonization Events in ZRANB2.

Authors:

Sang-Je Park Jae-Won Huh Young-Hyun Kim Heui-Soo Kim Kyu-Tae Chang

Comp Funct Genomics 2012 17;2012:170208. Epub 2012 Jun 17.

National Primate Research Center, Korea Research Institute of Bioscience and Biotechnology, Ochang, Chungbuk 363-883, Republic of Korea.

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August 2012

Genomic impact, chromosomal distribution and transcriptional regulation of HERV elements.

Authors:

Heui-Soo Kim

Mol Cells 2012 Jun 4;33(6):539-44. Epub 2012 May 4.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Korea.

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June 2012

Alternative splicing and its impact as a cancer diagnostic marker.

Authors:

Yun-Ji Kim Heui-Soo Kim

Genomics Inform 2012 Jun 30;10(2):74-80. Epub 2012 Jun 30.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Korea.

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June 2012

Evolutionary diversification of DYX1C1 transcripts via an HERV-H LTR integration event.

Authors:

Yun-Ji Kim Jae-Won Huh Dae-Soo Kim Kyudong Han Hwan-Mook Kim Heui-Soo Kim

Genes Genet Syst 2011 ;86(4):277-84

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Republic of Korea.

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April 2012

Inactivation of the MSLNL gene encoding mesothelin-like protein during African great ape evolution.

Authors:

Dong-Wook Kim Sangkyun Jeong Dong Seon Kim Heui-Soo Kim Sang-Beom Seo Yoonsoo Hahn

Gene 2012 Mar 14;496(1):17-21. Epub 2012 Jan 14.

School of Biological Sciences (BK21 Program), College of Natural Sciences, Chung-Ang University, Seoul 156-756, Republic of Korea.

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March 2012

Identification of ORF sequences and exercise-induced expression change in thoroughbred horse OXCT1 gene.

Authors:

Gyu-Hwi Nam Kung Ahn Jin-Han Bae Byung-Wook Cho Kyung-Do Park Hak-Kyo Lee Young-Mok Yang Tae-Hun Kim Hwan-Hoo Seong Kyudong Han Heui-Soo Kim

Gene 2012 Mar 24;496(1):45-8. Epub 2012 Jan 24.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea.

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March 2012

Quantitative analysis of transcript variants of CHM gene containing LTR12C element in humans.

Authors:

Yi-Deun Jung Jae-Won Huh Dae-Soo Kim Yun-Ji Kim Kung Ahn Hong-Seok Ha Ja-Rang Lee Joo Mi Yi Jae-Woo Moon Tae-Oh Kim Geun-Am Song Kyudong Han Heui-Soo Kim

Gene 2011 Dec 12;489(1):1-5. Epub 2011 Sep 12.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea.

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December 2011

Transcriptional variations mediated by an alternative promoter of the FPR3 gene.

Authors:

Hong-Seok Ha Jae-Won Huh Jeong-An Gim Kyudong Han Heui-Soo Kim

Mamm Genome 2011 Oct 30;22(9-10):621-33. Epub 2011 Jun 30.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea.

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October 2011

Molecular characterization of alternative transcripts of the horse BMAL1 gene.

Authors:

Jin-Han Bae Kung Ahn Gyu-Hwi Nam Chong-Eon Lee Kyung-Do Park Hak-Kyo Lee Byung-Wook Cho Heui-Soo Kim

Zoolog Sci 2011 Sep;28(9):671-5

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea.

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September 2011

Alternative splicing of human height-related zinc finger and BTB domain-containing 38 gene through Alu exonization.

Authors:

Kyung-Won Hong Young-Bin Shin Hyun-Seok Jin Ji-Eun Lim Je-Yong Choi Kyu-Tae Chang Heui-Soo Kim Bermseok Oh

Biochem Genet 2011 Jun 29;49(5-6):283-91. Epub 2010 Dec 29.

Department of Biomedical Engineering, School of Medicine, Kyung Hee University, Dongdaemun-gu, Seoul, Korea.

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June 2011

Quantitative analysis of retromer complex-related genes during embryo development in the mouse.

Authors:

Sang-Je Park Jae-Won Huh Young-Hyun Kim Ji-Su Kim Bong-Seok Song Sang-Rae Lee Sun-Uk Kim Heui-Soo Kim Kazuhiko Imakawa Kyu-Tae Chang

Mol Cells 2011 May 22;31(5):431-6. Epub 2011 Feb 22.

National Primate Research Center, Korea Research Institute of Bioscience and Biotechnology, Ochang 363-883, Korea.

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May 2011

Genomic structure and expression analyses of the PYGM gene in the thoroughbred horse.

Authors:

Gyu-Hwi Nam Kung Ahn Jin-Han Bae Kyudong Han Chong-Eon Lee Kyung-Do Park Sang-Hak Lee Byung-Wook Cho Heui-Soo Kim

Zoolog Sci 2011 Apr;28(4):276-80

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea.

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April 2011

Bioinformatic analysis of TE-spliced new exons within human, mouse and zebrafish genomes.

Authors:

Dae-Soo Kim Jae-Won Huh Young-Hyun Kim Sang-Je Park Heui-Soo Kim Kyu-Tae Chang

Genomics 2010 Nov 20;96(5):266-71. Epub 2010 Aug 20.

National Primate Research Center (NPRC), KRIBB, Ochang, Chungbuk 363-883, Republic of Korea.

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November 2010

Analysis of the molecular and regulatory properties of active porcine endogenous retrovirus gamma-1 long terminal repeats in kidney tissues of the NIH-Miniature pig.

Authors:

Sang-Je Park Jae-Won Huh Dae-Soo Kim Hong-Seok Ha Yi-Deun Jung Kung Ahn Keon Bong Oh Eung-Woo Park Kyu-Tae Chang Heui-Soo Kim

Mol Cells 2010 Oct 27;30(4):319-25. Epub 2010 Aug 27.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan, 609-735, Korea.

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October 2010

Alu-derived old world monkeys exonization event and experimental validation of the LEPR gene.

Authors:

Jae-Won Huh Young-Hyun Kim Dae-Soo Kim Sang-Je Park Sang-Rae Lee Sang-Hyun Kim Ekyune Kim Sun-Uk Kim Myeong-Su Kim Heui-Soo Kim Kyu-Tae Chang

Mol Cells 2010 Sep 23;30(3):201-7. Epub 2010 Aug 23.

National Primate Research Center, Korea Research Institute of Bioscience and Biotechnology, Ochang, 363-883, Korea.

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September 2010

Quantitative analysis of alternative transcripts of human PCDH11X/Y genes.

Authors:

Kung Ahn Jae-Won Huh Dae-Soo Kim Hong-Seok Ha Yun-Ji Kim Ja-Rang Lee Heui-Soo Kim

Am J Med Genet B Neuropsychiatr Genet 2010 Apr;153B(3):736-44

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan, Republic of Korea.

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April 2010

Four different ways of alternative transcripts generation mechanism in ADRA1A gene.

Authors:

Jae-Won Huh Young-Hyun Kim Sang-Rae Lee Dae-Soo Kim Sang-Je Park Hyoungwoo Kim Ji-Su Kim Bong-Seok Song Heui-Soo Kim Kyu-Tae Chang

Genes Genet Syst 2010 Feb;85(1):65-73

National Primate Research Center (NPRC), KRIBB, Ochang, Chungbuk 363-833, Republic of Korea.

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February 2010

Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elements.

Authors:

Jing Li Kyudong Han Jinchuan Xing Heui-Soo Kim Jeffrey Rogers Oliver A Ryder Todd Disotell Bisong Yue Mark A Batzer

Gene 2009 Dec 2;448(2):242-9. Epub 2009 Jun 2.

Department of Biological Sciences, Louisiana State University, 202 Life Sciences Building, Baton Rouge, Louisiana 70803, USA.

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December 2009

Structural and quantitative expression analyses of HERV gene family in human tissues.

Authors:

Kung Ahn Heui-Soo Kim

Mol Cells 2009 Aug 30;28(2):99-103. Epub 2009 Jul 30.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan, 609-735, Korea.

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August 2009

Gain of new exons and promoters by lineage-specific transposable elements-integration and conservation event on CHRM3 gene.

Authors:

Jae-Won Huh Young-Hyun Kim Sang-Rae Lee Hyoungwoo Kim Dae-Soo Kim Heui-Soo Kim Han-Seok Kang Kyu-Tae Chang

Mol Cells 2009 Aug 30;28(2):111-7. Epub 2009 Jul 30.

National Primate Research Center, Korea Research Institute of Bioscience and Biotechnology, Ochang, 363-883, Korea.

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August 2009

Molecular cloning, gene expression, and tissue distribution of adiponectin and its receptors in the Japanese monkey, Macaca fuscata.

Authors:

Kyung-Hwa Kang Atsunori Higashino Heui-Soo Kim Yong-Tae Lee Takashi Kageyama

J Med Primatol 2009 Apr;38(2):77-85

Center for Human Evolution Modeling Research, Primate Research Institute, Kyoto University, Inuyama Aichi, Japan.

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April 2009

Lineage specific evolutionary events on SFTPB gene: Alu recombination-mediated deletion (ARMD), exonization, and alternative splicing events.

Authors:

Ja-Rang Lee Jae-Won Huh Dae-Soo Kim Hong-Seok Ha Kung Ahn Yun-Ji Kim Kyu-Tae Chang Heui-Soo Kim

Gene 2009 Apr 23;435(1-2):29-35. Epub 2009 Jan 23.

Pusan National University, Busan, Republic of Korea.

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April 2009

Chromosomal inversions between human and chimpanzee lineages caused by retrotransposons.

Authors:

Jungnam Lee Kyudong Han Thomas J Meyer Heui-Soo Kim Mark A Batzer

PLoS One 2008 29;3(12):e4047. Epub 2008 Dec 29.

Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, USA.

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March 2009

Molecular characterization of the DYX1C1 gene and its application as a cancer biomarker.

Authors:

Yun-Ji Kim Jae-Won Huh Dae-Soo Kim Min-In Bae Ja-Rang Lee Hong-Seok Ha Kung Ahn Tae-Oh Kim Geun-Am Song Heui-Soo Kim

J Cancer Res Clin Oncol 2009 Feb 10;135(2):265-70. Epub 2008 Jul 10.

Division of Biological Sciences, College of Natural Sciences, Pusan National University, Busan, 609-735, Republic of Korea.

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February 2009

EVOG: a database for evolutionary analysis of overlapping genes.

Authors:

Dae-Soo Kim Chi-Young Cho Jae-Won Huh Heui-Soo Kim Hwan-Gue Cho

Nucleic Acids Res 2009 Jan 5;37(Database issue):D698-702. Epub 2008 Nov 5.

Korean BioInformation Center, KRIBB, Daejeon 305-806, School of Computer Science and Engineering, College of Engineering, Pusan National University, Busan 609-735, Korea.

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January 2009