Publications by authors named "Herawati Sudoyo"

58Publications

Papuan mitochondrial genomes and the settlement of Sahul.

J Hum Genet 2020 Oct 1;65(10):875-887. Epub 2020 Jun 1.

Laboratoire Évolution and Diversité Biologique (EDB UMR 5174), Université de Toulouse Midi-Pyrénées, CNRS, IRD, UPS, 118 route de Narbonne, Bat 4R1, 31062, Toulouse, France.

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http://dx.doi.org/10.1038/s10038-020-0781-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7449881PMC
October 2020

Correction to: Archaic mitochondrial DNA inserts in modern day nuclear genomes.

BMC Genomics 2020 01 17;21(1):55. Epub 2020 Jan 17.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, D04103, Leipzig, Germany.

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http://dx.doi.org/10.1186/s12864-020-6449-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6966873PMC
January 2020

Archaic mitochondrial DNA inserts in modern day nuclear genomes.

BMC Genomics 2019 Dec 26;20(1):1017. Epub 2019 Dec 26.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig, D04103, Germany.

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http://dx.doi.org/10.1186/s12864-019-6392-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6933719PMC
December 2019

Sex-linked genetic diversity originates from persistent sociocultural processes at microgeographic scales.

R Soc Open Sci 2019 Aug 28;6(8):190733. Epub 2019 Aug 28.

Statistics and Bioinformatics Group, School of Fundamental Sciences, Massey University, Palmerston North 4410, New Zealand.

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http://dx.doi.org/10.1098/rsos.190733DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6731738PMC
August 2019

Multiple Deeply Divergent Denisovan Ancestries in Papuans.

Cell 2019 05 11;177(4):1010-1021.e32. Epub 2019 Apr 11.

Statistics and Bioinformatics Group, School of Fundamental Sciences, Massey University, Palmerston North 4410, New Zealand. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2019.02.035DOI Listing
May 2019

Transcription factor 7-like 2 single nucleotide polymorphisms are associated with lipid profile in the Balinese.

Mol Biol Rep 2018 Oct 19;45(5):1135-1143. Epub 2018 Jul 19.

Eijkman Institute for Molecular Biology, Ministry of Research, Technology and Higher Education, Jl. Diponegoro No. 69, Jakarta, 10430, Indonesia.

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http://dx.doi.org/10.1007/s11033-018-4265-xDOI Listing
October 2018

Kinship structures create persistent channels for language transmission.

Proc Natl Acad Sci U S A 2017 12 20;114(49):12910-12915. Epub 2017 Nov 20.

Statistics and Bioinformatics Group, Institute of Fundamental Sciences, Massey University, Palmerston North 4410, New Zealand.

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http://dx.doi.org/10.1073/pnas.1706416114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5724253PMC
December 2017

Complex Patterns of Admixture across the Indonesian Archipelago.

Mol Biol Evol 2017 10;34(10):2439-2452

Statistics and Bioinformatics Group, Institute of Fundamental Sciences, Massey University, Palmerston North, New Zealand.

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http://dx.doi.org/10.1093/molbev/msx196DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5850824PMC
October 2017

Genomic admixture tracks pulses of economic activity over 2,000 years in the Indian Ocean trading network.

Sci Rep 2017 06 7;7(1):2919. Epub 2017 Jun 7.

Evolutionary Medicine Group, Laboratoire d'Anthropologie Moléculaire et Imagerie de Synthèse UMR 5288 CNRS, Université Toulouse III, Université de Toulouse, Toulouse, France.

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http://dx.doi.org/10.1038/s41598-017-03204-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5462752PMC
June 2017

The last sea nomads of the Indonesian archipelago: genomic origins and dispersal.

Eur J Hum Genet 2017 08 17;25(8):1004-1010. Epub 2017 May 17.

Equipe de Médecine Evolutive, Laboratoire d'Anthropologie Moléculaire et Imagerie de Synthèse UMR-5288, Université de Toulouse, Toulouse, France.

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http://dx.doi.org/10.1038/ejhg.2017.88DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5567155PMC
August 2017

Genomic analyses inform on migration events during the peopling of Eurasia.

Authors:
Luca Pagani Daniel John Lawson Evelyn Jagoda Alexander Mörseburg Anders Eriksson Mario Mitt Florian Clemente Georgi Hudjashov Michael DeGiorgio Lauri Saag Jeffrey D Wall Alexia Cardona Reedik Mägi Melissa A Wilson Sayres Sarah Kaewert Charlotte Inchley Christiana L Scheib Mari Järve Monika Karmin Guy S Jacobs Tiago Antao Florin Mircea Iliescu Alena Kushniarevich Qasim Ayub Chris Tyler-Smith Yali Xue Bayazit Yunusbayev Kristiina Tambets Chandana Basu Mallick Lehti Saag Elvira Pocheshkhova George Andriadze Craig Muller Michael C Westaway David M Lambert Grigor Zoraqi Shahlo Turdikulova Dilbar Dalimova Zhaxylyk Sabitov Gazi Nurun Nahar Sultana Joseph Lachance Sarah Tishkoff Kuvat Momynaliev Jainagul Isakova Larisa D Damba Marina Gubina Pagbajabyn Nymadawa Irina Evseeva Lubov Atramentova Olga Utevska François-Xavier Ricaut Nicolas Brucato Herawati Sudoyo Thierry Letellier Murray P Cox Nikolay A Barashkov Vedrana Skaro Lejla Mulahasanovic Dragan Primorac Hovhannes Sahakyan Maru Mormina Christina A Eichstaedt Daria V Lichman Syafiq Abdullah Gyaneshwer Chaubey Joseph T S Wee Evelin Mihailov Alexandra Karunas Sergei Litvinov Rita Khusainova Natalya Ekomasova Vita Akhmetova Irina Khidiyatova Damir Marjanović Levon Yepiskoposyan Doron M Behar Elena Balanovska Andres Metspalu Miroslava Derenko Boris Malyarchuk Mikhail Voevoda Sardana A Fedorova Ludmila P Osipova Marta Mirazón Lahr Pascale Gerbault Matthew Leavesley Andrea Bamberg Migliano Michael Petraglia Oleg Balanovsky Elza K Khusnutdinova Ene Metspalu Mark G Thomas Andrea Manica Rasmus Nielsen Richard Villems Eske Willerslev Toomas Kivisild Mait Metspalu

Nature 2016 Oct 21;538(7624):238-242. Epub 2016 Sep 21.

Estonian Biocentre, Tartu, Estonia.

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http://dx.doi.org/10.1038/nature19792DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5164938PMC
October 2016

Malagasy Genetic Ancestry Comes from an Historical Malay Trading Post in Southeast Borneo.

Mol Biol Evol 2016 09 5;33(9):2396-400. Epub 2016 Jul 5.

Evolutionary Medicine Group, Laboratoire d'Anthropologie Moléculaire et Imagerie de Synthèse UMR 5288 CNRS, Université Toulouse III, Université de Toulouse, Toulouse, France

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http://dx.doi.org/10.1093/molbev/msw117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4989113PMC
September 2016

Contrasting Linguistic and Genetic Origins of the Asian Source Populations of Malagasy.

Sci Rep 2016 05 18;6:26066. Epub 2016 May 18.

Evolutionary Medicine Group, Laboratoire d'Anthropologie Moléculaire et Imagerie de Synthèse UMR-5288, Université de Toulouse, Toulouse, France.

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http://dx.doi.org/10.1038/srep26066DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4870696PMC
May 2016

Allele frequency data for 15 autosomal STR loci in eight Indonesian subpopulations.

Forensic Sci Int Genet 2016 Jan 3;20:45-52. Epub 2015 Oct 3.

National Centre for Forensic Studies, Faculty of Education, Science, Technology and Mathematics, University of Canberra, Canberra, Australia.

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https://linkinghub.elsevier.com/retrieve/pii/S18724973153007
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http://dx.doi.org/10.1016/j.fsigen.2015.09.014DOI Listing
January 2016

Relaxed Observance of Traditional Marriage Rules Allows Social Connectivity without Loss of Genetic Diversity.

Mol Biol Evol 2015 Sep 12;32(9):2254-62. Epub 2015 May 12.

Statistics and Bioinformatics Group, Institute of Fundamental Sciences, Massey University, Palmerston North, New Zealand

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http://dx.doi.org/10.1093/molbev/msv102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4540962PMC
September 2015

Reconstructing Past Admixture Processes from Local Genomic Ancestry Using Wavelet Transformation.

Genetics 2015 Jun 7;200(2):469-81. Epub 2015 Apr 7.

Statistics and Bioinformatics Group, Institute of Fundamental Sciences, Massey University, Palmerston North 4442, New Zealand

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http://dx.doi.org/10.1534/genetics.115.176842DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4492373PMC
June 2015

Isolation, contact and social behavior shaped genetic diversity in West Timor.

J Hum Genet 2014 Sep 31;59(9):494-503. Epub 2014 Jul 31.

Institute of Fundamental Sciences, Massey University, Palmerston North, New Zealand.

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http://dx.doi.org/10.1038/jhg.2014.62DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4521296PMC
September 2014

Toward male individualization with rapidly mutating y-chromosomal short tandem repeats.

Authors:
Kaye N Ballantyne Arwin Ralf Rachid Aboukhalid Niaz M Achakzai Maria J Anjos Qasim Ayub Jože Balažic Jack Ballantyne David J Ballard Burkhard Berger Cecilia Bobillo Mehdi Bouabdellah Helen Burri Tomas Capal Stefano Caratti Jorge Cárdenas François Cartault Elizeu F Carvalho Monica Carvalho Baowen Cheng Michael D Coble David Comas Daniel Corach Maria E D'Amato Sean Davison Peter de Knijff Maria Corazon A De Ungria Ronny Decorte Tadeusz Dobosz Berit M Dupuy Samir Elmrghni Mateusz Gliwiński Sara C Gomes Laurens Grol Cordula Haas Erin Hanson Jürgen Henke Lotte Henke Fabiola Herrera-Rodríguez Carolyn R Hill Gunilla Holmlund Katsuya Honda Uta-Dorothee Immel Shota Inokuchi Mark A Jobling Mahmoud Kaddura Jong S Kim Soon H Kim Wook Kim Turi E King Eva Klausriegler Daniel Kling Lejla Kovačević Leda Kovatsi Paweł Krajewski Sergey Kravchenko Maarten H D Larmuseau Eun Young Lee Ruediger Lessig Ludmila A Livshits Damir Marjanović Marek Minarik Natsuko Mizuno Helena Moreira Niels Morling Meeta Mukherjee Patrick Munier Javaregowda Nagaraju Franz Neuhuber Shengjie Nie Premlaphat Nilasitsataporn Takeki Nishi Hye H Oh Jill Olofsson Valerio Onofri Jukka U Palo Horolma Pamjav Walther Parson Michal Petlach Christopher Phillips Rafal Ploski Samayamantri P R Prasad Dragan Primorac Gludhug A Purnomo Josephine Purps Hector Rangel-Villalobos Krzysztof Rębała Budsaba Rerkamnuaychoke Danel Rey Gonzalez Carlo Robino Lutz Roewer Alexandra Rosa Antti Sajantila Andrea Sala Jazelyn M Salvador Paula Sanz Cornelia Schmitt Anil K Sharma Dayse A Silva Kyoung-Jin Shin Titia Sijen Miriam Sirker Daniela Siváková Vedrana Skaro Carlos Solano-Matamoros Luis Souto Vlastimil Stenzl Herawati Sudoyo Denise Syndercombe-Court Adriano Tagliabracci Duncan Taylor Andreas Tillmar Iosif S Tsybovsky Chris Tyler-Smith Kristiaan J van der Gaag Daniel Vanek Antónia Völgyi Denise Ward Patricia Willemse Eric P H Yap Rita Y Y Yong Irena Zupanič Pajnič Manfred Kayser

Hum Mutat 2014 Aug 14;35(8):1021-32. Epub 2014 Jul 14.

Department of Forensic Molecular Biology, Erasmus MC University Medical Centre Rotterdam, Rotterdam, The Netherlands; Office of the Chief Forensic Scientist, Victoria Police Forensic Services Department, Macleod, Victoria, Australia.

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http://dx.doi.org/10.1002/humu.22599DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4145662PMC
August 2014

Improved phylogenetic resolution and rapid diversification of Y-chromosome haplogroup K-M526 in Southeast Asia.

Eur J Hum Genet 2015 Mar 4;23(3):369-73. Epub 2014 Jun 4.

1] ARL Division of Biotechnology, University of Arizona, Tucson, AZ, USA [2] School of Anthropology, University of Arizona, Tucson, AZ, USA.

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http://dx.doi.org/10.1038/ejhg.2014.106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4326703PMC
March 2015

Climate change influenced female population sizes through time across the Indonesian archipelago.

Hum Biol 2013 Feb-Jun;85(1-3):135-52

Institute of Fundamental Sciences, Massey University, Palmerston North, New Zealand.

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http://dx.doi.org/10.3378/027.085.0306DOI Listing
April 2015

The Indonesian archipelago: an ancient genetic highway linking Asia and the Pacific.

J Hum Genet 2013 Mar 24;58(3):165-73. Epub 2013 Jan 24.

Department of Anthropology, University of Arizona, Tucson, AZ, USA.

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http://dx.doi.org/10.1038/jhg.2012.154DOI Listing
March 2013

A small cohort of Island Southeast Asian women founded Madagascar.

Proc Biol Sci 2012 Jul 21;279(1739):2761-8. Epub 2012 Mar 21.

Institute of Molecular BioSciences, Massey University, Private Bag 11 222, Palmerston North, New Zealand.

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http://dx.doi.org/10.1098/rspb.2012.0012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3367776PMC
July 2012

Genetic continuity across a deeply divergent linguistic contact zone in North Maluku, Indonesia.

BMC Genet 2011 Nov 18;12:100. Epub 2011 Nov 18.

Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, USA.

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http://dx.doi.org/10.1186/1471-2156-12-100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3252253PMC
November 2011

Major east-west division underlies Y chromosome stratification across Indonesia.

Mol Biol Evol 2010 Aug 5;27(8):1833-44. Epub 2010 Mar 5.

ARL Division of Biotechnology, University of Arizona, AZ, USA.

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http://dx.doi.org/10.1093/molbev/msq063DOI Listing
August 2010

Mapping human genetic diversity in Asia.

Science 2009 Dec;326(5959):1541-5

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http://dx.doi.org/10.1126/science.1177074DOI Listing
December 2009

Genetic structure of a unique admixed population: implications for medical research.

Hum Mol Genet 2010 Feb 5;19(3):411-9. Epub 2009 Nov 5.

Broad Institute, Massachusetts Institute of Technology and Harvard University, Cambridge Center, Cambridge, MA, USA.

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http://dx.doi.org/10.1093/hmg/ddp505DOI Listing
February 2010

Genetic admixture history of Eastern Indonesia as revealed by Y-chromosome and mitochondrial DNA analysis.

Mol Biol Evol 2009 Aug 4;26(8):1865-77. Epub 2009 May 4.

Department of Forensic Molecular Biology, Erasmus University Medical Center Rotterdam, Rotterdam, The Netherlands.

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http://dx.doi.org/10.1093/molbev/msp097DOI Listing
August 2009

Molecular population genetics of SLC4A1 and Southeast Asian ovalocytosis.

J Hum Genet 2009 Mar 20;54(3):182-7. Epub 2009 Feb 20.

Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ 86011-5640, USA.

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http://dx.doi.org/10.1038/jhg.2009.12DOI Listing
March 2009

Molecular population genetics of SLC4A1 and Southeast Asian ovalocytosis.

J Hum Genet 2009 Mar 20;54(3):182-7. Epub 2009 Feb 20.

Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ 86011-5640, USA.

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http://dx.doi.org/10.1038/jhg.2009.12DOI Listing
March 2009

Male dominance rarely skews the frequency distribution of Y chromosome haplotypes in human populations.

Proc Natl Acad Sci U S A 2008 Aug 14;105(33):11645-50. Epub 2008 Aug 14.

Department of Anthropology, University of Arizona, Tucson, AZ 85721, USA.

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http://dx.doi.org/10.1073/pnas.0710158105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2575272PMC
August 2008

A Polynesian motif on the Y chromosome: population structure in remote Oceania.

Hum Biol 2007 Oct;79(5):525-35

Arizona Research Laboratories, University of Arizona, Tucson, AZ 85721, USA.

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http://dx.doi.org/10.1353/hub.2008.0004DOI Listing
October 2007

Genetic study of hepatitis B virus in Indonesia reveals a new subgenotype of genotype B in east Nusa Tenggara.

Arch Virol 2008 8;153(6):1057-65. Epub 2008 May 8.

Eijkman Institute for Molecular Biology, Jl. Diponegoro 69, Jakarta 10430, Indonesia.

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http://link.springer.com/content/pdf/10.1007/s00705-008-0092
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http://link.springer.com/10.1007/s00705-008-0092-z
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http://dx.doi.org/10.1007/s00705-008-0092-zDOI Listing
August 2008

Coevolution of languages and genes on the island of Sumba, eastern Indonesia.

Proc Natl Acad Sci U S A 2007 Oct 3;104(41):16022-6. Epub 2007 Oct 3.

Department of Anthropology, University of Arizona, 1009 East South Campus Drive, Tucson, AZ 85721, USA.

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http://dx.doi.org/10.1073/pnas.0704451104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2042155PMC
October 2007

Patterns of Y-chromosome diversity intersect with the Trans-New Guinea hypothesis.

Mol Biol Evol 2007 Nov 10;24(11):2546-55. Epub 2007 Sep 10.

Department of Genetics and Microbiology, University of Bari, Bari, Italy.

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http://www.biologia.uniba.it/evo-amb/PhD_programs/publicatio
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http://mbe.oxfordjournals.org/cgi/doi/10.1093/molbev/msm187
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http://dx.doi.org/10.1093/molbev/msm187DOI Listing
November 2007

Prevalence of the mitochondrial DNA A1555G mutation in sensorineural deafness patients in island Southeast Asia.

J Hum Genet 2003 3;48(9):480-483. Epub 2003 Sep 3.

Eijkman Institute for Molecular Biology, Jl. Diponegoro 69, 10430, Jakarta , Indonesia.

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http://dx.doi.org/10.1007/s10038-003-0056-9DOI Listing
December 2003

Mitochondrial genome and susceptibility to diabetes mellitus.

Adv Exp Med Biol 2003 ;531:19-36

Eijkman Institute for Molecular Biology, Jl. Diponegoro 69, Jakarta, Indonesia.

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http://dx.doi.org/10.1007/978-1-4615-0059-9_2DOI Listing
September 2003

Human genome diversity and disease on the island Southeast Asia.

Adv Exp Med Biol 2003 ;531:3-18

Eijkman Institute for Molecular Biology, Jl. Diponegoro 69, Jakarta, Indonesia.

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http://dx.doi.org/10.1007/978-1-4615-0059-9_1DOI Listing
September 2003

Asian-specific mtDNA backgrounds associated with the primary G11778A mutation of Leber's hereditary optic neuropathy.

J Hum Genet 2002 ;47(11):594-604

Eijkman Institute for Molecular Biology, Jl. Diponegoro 69, Jakarta 10430, Indonesia.

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http://dx.doi.org/10.1007/s100380200091DOI Listing
January 2003