Hendrik G Stunnenberg

Hendrik G Stunnenberg

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Hendrik G Stunnenberg

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Publisher Correction: Epigenetic modulation of a hardwired 3D chromatin landscape in two naive states of pluripotency.

Nat Cell Biol 2019 Jul;21(7):911-912

Department of Molecular Biology, Faculty of Science, Radboud University, Radboud Institute for Molecular Life Sciences, Nijmegen, the Netherlands.

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http://dx.doi.org/10.1038/s41556-019-0341-2DOI Listing
July 2019

Epigenetic modulation of a hardwired 3D chromatin landscape in two naive states of pluripotency.

Nat Cell Biol 2019 05 29;21(5):568-578. Epub 2019 Apr 29.

Department of Molecular Biology, Faculty of Science, Radboud University, Radboud Institute for Molecular Life Sciences, Nijmegen, the Netherlands.

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http://www.nature.com/articles/s41556-019-0310-9
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http://dx.doi.org/10.1038/s41556-019-0310-9DOI Listing
May 2019

BRD9 binds cell type-specific chromatin regions regulating leukemic cell survival via STAT5 inhibition.

Cell Death Dis 2019 Apr 18;10(5):338. Epub 2019 Apr 18.

Department of Precision Medicine, University of Campania "Luigi Vanvitelli", Vico L. De Crecchio 7, 80138, Napoli, Italy.

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http://dx.doi.org/10.1038/s41419-019-1570-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6472371PMC
April 2019

Author Correction: Landscape of somatic mutations in 560 breast cancer whole-genome sequences.

Nature 2019 02;566(7742):E1

Wellcome Trust Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK.

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http://www.nature.com/articles/s41586-019-0883-2
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http://dx.doi.org/10.1038/s41586-019-0883-2DOI Listing
February 2019

Combined quantification of intracellular (phospho-)proteins and transcriptomics from fixed single cells.

Sci Rep 2019 Feb 6;9(1):1469. Epub 2019 Feb 6.

Department of Molecular Developmental Biology, Radboud Institute for Molecular Life Sciences, Science Faculty, Radboud University, PO Box 9101, 6500 HB, Nijmegen, The Netherlands.

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http://dx.doi.org/10.1038/s41598-018-37977-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6365588PMC
February 2019

Extensive epigenomic integration of the glucocorticoid response in primary human monocytes and in vitro derived macrophages.

Sci Rep 2019 Feb 26;9(1):2772. Epub 2019 Feb 26.

Department of Molecular Biology, Radboud Institute for Molecular Life Sciences, Faculty of Science Radboud University, PO box 9101, 6500 HG, Nijmegen, The Netherlands.

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http://dx.doi.org/10.1038/s41598-019-39395-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6391480PMC
February 2019

Mutant p63 Affects Epidermal Cell Identity through Rewiring the Enhancer Landscape.

Cell Rep 2018 Dec;25(12):3490-3503.e4

Department of Molecular Developmental Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Radboud University, Nijmegen, the Netherlands; Department of Human Genetics, Radboud University Medical Center, Nijmegen, the Netherlands. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22111247183180
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http://dx.doi.org/10.1016/j.celrep.2018.11.039DOI Listing
December 2018

Immuno-detection by sequencing enables large-scale high-dimensional phenotyping in cells.

Nat Commun 2018 06 19;9(1):2384. Epub 2018 Jun 19.

Department of Molecular Developmental Biology, Radboud Institute for Molecular Life Sciences, Radboud University, PO Box 9101, 6500 HB, Nijmegen, The Netherlands.

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http://www.nature.com/articles/s41467-018-04761-0
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http://dx.doi.org/10.1038/s41467-018-04761-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6008431PMC
June 2018

Dendritic Cells Actively Limit Interleukin-10 Production Under Inflammatory Conditions DC-SCRIPT and Dual-Specificity Phosphatase 4.

Front Immunol 2018 22;9:1420. Epub 2018 Jun 22.

Radiotherapy & OncoImmunology Laboratory, Department of Radiation Oncology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, Netherlands.

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http://dx.doi.org/10.3389/fimmu.2018.01420DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6023963PMC
June 2018

Brd4-independence in ground state pluripotency.

Nat Cell Biol 2018 05;20(5):513-515

Department of Molecular Biology, Faculty of Science, Radboud University, Nijmegen, The Netherlands.

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http://dx.doi.org/10.1038/s41556-018-0099-yDOI Listing
May 2018

Transcriptional and functional profiling defines human small intestinal macrophage subsets.

J Exp Med 2018 02 22;215(2):441-458. Epub 2017 Dec 22.

Centre for Immune Regulation, Department of Pathology, University of Oslo and Oslo University Hospital, Rikshospitalet, Oslo, Norway

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http://dx.doi.org/10.1084/jem.20170057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5789404PMC
February 2018

BCG Vaccination Protects against Experimental Viral Infection in Humans through the Induction of Cytokines Associated with Trained Immunity.

Cell Host Microbe 2018 Jan;23(1):89-100.e5

Department of Internal Medicine and Radboud Center for Infectious Diseases, Radboud University Medical Center, Nijmegen, the Netherlands; Department for Genomics & Immunoregulation, Life and Medical Sciences Institute (LIMES), University of Bonn, 53115 Bonn, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2017.12.010DOI Listing
January 2018

I Remember You: Epigenetic Priming in Epithelial Stem Cells.

Immunity 2017 12;47(6):1019-1021

Department of Molecular Biology, Radboud Institute of Molecular Life Sciences and Faculty of Science, Radboud University, 6525 GA Nijmegen, the Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.immuni.2017.12.005DOI Listing
December 2017

Integrated transcriptional analysis unveils the dynamics of cellular differentiation in the developing mouse hippocampus.

Sci Rep 2017 12 22;7(1):18073. Epub 2017 Dec 22.

Radboud University, Department of Molecular Biology, Faculty of Science, 6500 HB, Nijmegen, The Netherlands.

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http://dx.doi.org/10.1038/s41598-017-18287-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5741714PMC
December 2017

The interplay of epigenetic marks during stem cell differentiation and development.

Nat Rev Genet 2017 11 14;18(11):643-658. Epub 2017 Aug 14.

Department of Molecular Biology, Faculty of Science, Radboud University, 6525 GA Nijmegen, The Netherlands.

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http://dx.doi.org/10.1038/nrg.2017.57DOI Listing
November 2017

Transcriptional and epigenetic control in mouse pluripotency: lessons from in vivo and in vitro studies.

Curr Opin Genet Dev 2017 Oct 29;46:114-122. Epub 2017 Jul 29.

Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Radboud University, 6500HB Nijmegen, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.gde.2017.07.005DOI Listing
October 2017

N-methyladenosine (mA) recruits and repels proteins to regulate mRNA homeostasis.

Nat Struct Mol Biol 2017 Oct 4;24(10):870-878. Epub 2017 Sep 4.

Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Radboud University Nijmegen, Nijmegen, the Netherlands.

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http://dx.doi.org/10.1038/nsmb.3462DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5725193PMC
October 2017

Distinct Cell-Cycle Control in Two Different States of Mouse Pluripotency.

Cell Stem Cell 2017 10;21(4):449-455.e4

Department of Molecular Biology, Faculty of Science, Radboud University, 6525GA Nijmegen, the Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2017.09.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5658514PMC
October 2017

Time-resolved analysis of DNA-protein interactions in living cells by UV laser pulses.

Sci Rep 2017 09 15;7(1):11725. Epub 2017 Sep 15.

Dipartimento di Biochimica, Biofisica e Patologia Generale, Università degli Studi della Campania "L. Vanvitelli", Vico L. De Crecchio 7, 80138, Napoli, IT, Italy.

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http://dx.doi.org/10.1038/s41598-017-12010-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5601431PMC
September 2017

Uric acid priming in human monocytes is driven by the AKT-PRAS40 autophagy pathway.

Proc Natl Acad Sci U S A 2017 05 8;114(21):5485-5490. Epub 2017 May 8.

Department of Internal Medicine, Radboud University Medical Center, 6525 GA Nijmegen, The Netherlands;

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http://dx.doi.org/10.1073/pnas.1620910114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5448210PMC
May 2017

Genome-wide epigenomic profiling for biomarker discovery.

Clin Epigenetics 2016 21;8:122. Epub 2016 Nov 21.

Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Radboud University, 6500HB Nijmegen, The Netherlands.

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http://dx.doi.org/10.1186/s13148-016-0284-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5117701PMC
April 2017

Digitalis-like Compounds Facilitate Non-Medullary Thyroid Cancer Redifferentiation through Intracellular Ca2+, FOS, and Autophagy-Dependent Pathways.

Mol Cancer Ther 2017 01 11;16(1):169-181. Epub 2016 Nov 11.

Department of Pathology, Radboud University Medical Center and Radboud Institute for Molecular Life Sciences, Nijmegen, the Netherlands.

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http://dx.doi.org/10.1158/1535-7163.MCT-16-0460DOI Listing
January 2017

DNA Methylation Dynamics of Human Hematopoietic Stem Cell Differentiation.

Cell Stem Cell 2016 12 17;19(6):808-822. Epub 2016 Nov 17.

CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria; Max Planck Institute for Informatics, Saarland Informatics Campus, 66123 Saarbrücken, Germany; Department of Laboratory Medicine, Medical University of Vienna, 1090 Vienna, Austria; Ludwig Boltzmann Institute for Rare and Undiagnosed Diseases, 1090 Vienna, Austria. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2016.10.019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5145815PMC
December 2016

The Hematopoietic Transcription Factors RUNX1 and ERG Prevent AML1-ETO Oncogene Overexpression and Onset of the Apoptosis Program in t(8;21) AMLs.

Cell Rep 2016 11;17(8):2087-2100

Radboud University, Department of Molecular Biology, Faculty of Science, Nijmegen Centre for Molecular Life Sciences, 6500 HB Nijmegen, the Netherlands; Dipartimento di Patologia Generale, Seconda Università degli Studi di Napoli, Vico Luigi de Crecchio 7, 80138 Napoli, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2016.08.082DOI Listing
November 2016

Distinct Trends of DNA Methylation Patterning in the Innate and Adaptive Immune Systems.

Cell Rep 2016 11;17(8):2101-2111

CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Baldiri i Reixac 4, Barcelona 08028, Spain; Universitat Pompeu Fabra (UPF), Barcelona 08002, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2016.10.054DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5889099PMC
November 2016

The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery.

Cell 2016 Nov;167(5):1145-1149

Department of Microbiology and Immunology, Michael Smith Laboratories, University of British Columbia, Vancouver, BC V6T 1Z4, Canada; Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, BC V5Z 4S6, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2016.11.007DOI Listing
November 2016

Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells.

Cell 2016 11;167(5):1398-1414.e24

Department of Human Genetics, The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1HH, UK; Department of Haematology, University of Cambridge, Cambridge Biomedical Campus, Long Road, Cambridge CB2 0PT, UK; British Heart Foundation Centre of Excellence, Division of Cardiovascular Medicine, Addenbrooke's Hospital, Hills Road, Cambridge CB2 0QQ, UK; The National Institute for Health Research Blood and Transplant Unit (NIHR BTRU) in Donor Health and Genomics at the University of Cambridge, Strangeways Research Laboratory, University of Cambridge, Wort's Causeway, Cambridge CB1 8RN, UK. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00928674163144
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http://dx.doi.org/10.1016/j.cell.2016.10.026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5119954PMC
November 2016

The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.

Cell 2016 11;167(5):1415-1429.e19

Department of Haematology, University of Cambridge, Cambridge Biomedical Campus, Long Road, Cambridge CB2 0PT, UK; Department of Human Genetics, The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1HH, UK; The National Institute for Health Research Blood and Transplant Unit (NIHR BTRU) in Donor Health and Genomics at the University of Cambridge, University of Cambridge, Strangeways Research Laboratory, Wort's Causeway, Cambridge CB1 8RN, UK; British Heart Foundation Centre of Excellence, Division of Cardiovascular Medicine, Addenbrooke's Hospital, Hills Road, Cambridge CB2 0QQ, UK. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2016.10.042DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5300907PMC
November 2016

Epigenetic memory: A macrophage perspective.

Semin Immunol 2016 08;28(4):359-67

Department of Molecular Biology, Faculties of Science and Medicine, Nijmegen Centre for Molecular Life Sciences, Radboud University, 6500 HB Nijmegen, The Netherlands; NCMLS, FNWI, Radboud University Nijmegen, The Netherlands.

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http://dx.doi.org/10.1016/j.smim.2016.06.003DOI Listing
August 2016

Dynamic chromatin organization: Role in development and disease.

Int J Biochem Cell Biol 2016 07 12;76:119-22. Epub 2016 May 12.

Radboud University, Department of Molecular Biology, Faculty of Science, 6500HB Nijmegen, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.biocel.2016.05.006DOI Listing
July 2016

MEIS2 Is an Oncogenic Partner in AML1-ETO-Positive AML.

Cell Rep 2016 07 23;16(2):498-507. Epub 2016 Jun 23.

Institute of Experimental Cancer Research, CCC and University Hospital of Ulm, 89081 Ulm, Germany; Core Facility Genomics, Medical Faculty Ulm, Ulm University, 89081 Ulm, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2016.05.094DOI Listing
July 2016

Saturation analysis for whole-genome bisulfite sequencing data.

Nat Biotechnol 2016 07 27;34(7):691-693. Epub 2016 Jun 27.

Medical Genomics, UCL Cancer Institute, University College London, London, UK.

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http://dx.doi.org/10.1038/nbt.3524DOI Listing
July 2016

Landscape of somatic mutations in 560 breast cancer whole-genome sequences.

Nature 2016 06 2;534(7605):47-54. Epub 2016 May 2.

Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1038/nature17676DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4910866PMC
June 2016

Recruitment of the Mammalian Histone-modifying EMSY Complex to Target Genes Is Regulated by ZNF131.

J Biol Chem 2016 Apr 3;291(14):7313-24. Epub 2016 Feb 3.

From the Department of Molecular Cancer Research, University Medical Center Utrecht, Universiteitsweg 100, 3584CG Utrecht, The Netherlands, Department of Molecular Biology, Radboud Institute for Molecular Life Sciences, Geert Grooteplein Zuid 30, 6525GA Nijmegen, The Netherlands,

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http://dx.doi.org/10.1074/jbc.M115.701227DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4817164PMC
April 2016

Trained immunity: A program of innate immune memory in health and disease.

Science 2016 Apr 21;352(6284):aaf1098. Epub 2016 Apr 21.

The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA. Center for Computational and Integrative Biology and Gastrointestinal Unit, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5087274PMC
http://dx.doi.org/10.1126/science.aaf1098DOI Listing
April 2016

GATA3-dependent cellular reprogramming requires activation-domain dependent recruitment of a chromatin remodeler.

Genome Biol 2016 Feb 27;17:36. Epub 2016 Feb 27.

Epigenetics and Stem Cell Biology Laboratory, National Institute of Environmental Health Sciences, Research Triangle Park, NC, USA.

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http://dx.doi.org/10.1186/s13059-016-0897-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4769547PMC
February 2016

Dynamic Reorganization of Extremely Long-Range Promoter-Promoter Interactions between Two States of Pluripotency.

Cell Stem Cell 2015 Dec;17(6):748-757

Radboud University, Faculty of Science, Department of Molecular Biology, 6525GA Nijmegen, the Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2015.11.010DOI Listing
December 2015

Genome-wide modeling of transcription kinetics reveals patterns of RNA production delays.

Proc Natl Acad Sci U S A 2015 Oct 5;112(42):13115-20. Epub 2015 Oct 5.

Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, United Kingdom

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http://dx.doi.org/10.1073/pnas.1420404112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4620908PMC
October 2015

Dynamics of gene silencing during X inactivation using allele-specific RNA-seq.

Genome Biol 2015 Aug 3;16:149. Epub 2015 Aug 3.

Radboud University, Faculty of Science, Department of Molecular Biology, Radboud Institute for Molecular Life Sciences (RIMLS), 6500HB, Nijmegen, The Netherlands.

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http://dx.doi.org/10.1186/s13059-015-0698-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4546214PMC
August 2015

Transcription factor p63 bookmarks and regulates dynamic enhancers during epidermal differentiation.

EMBO Rep 2015 Jul 1;16(7):863-78. Epub 2015 Jun 1.

Department of Human Genetics, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, The Netherlands Department of Molecular Developmental Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences Radboud University, Nijmegen, The Netherlands

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http://dx.doi.org/10.15252/embr.201439941DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4515125PMC
July 2015

Analysis of chromatin-nuclear receptor interactions by laser-chromatin immunoprecipitation.

Methods Mol Biol 2014 ;1204:25-34

Dipartimento di Biochimica, Biofisica e Patologia Generale-II Università di Napoli, Via L. De Crecchio, 7, 80138, Naples, Italy.

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http://link.springer.com/10.1007/978-1-4939-1346-6_3
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http://dx.doi.org/10.1007/978-1-4939-1346-6_3DOI Listing
May 2015

A quantitative proteomics tool to identify DNA-protein interactions in primary cells or blood.

J Proteome Res 2015 Feb 8;14(2):1315-29. Epub 2015 Jan 8.

Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Radboud University Nijmegen , Nijmegen 6525 GA, The Netherlands.

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http://dx.doi.org/10.1021/pr5009515DOI Listing
February 2015

Developmental biology. A Me6Age for pluripotency.

Science 2015 Feb;347(6222):614-5

Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Radboud University Nijmegen, Nijmegen, Netherlands.

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http://dx.doi.org/10.1126/science.aaa6262DOI Listing
February 2015

Epigenomics: Roadmap for regulation.

Nature 2015 Feb;518(7539):314-6

Institut Curie, CNRS Unit UMR3664, 75231 Paris Cedex 05, France.

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http://dx.doi.org/10.1038/518314aDOI Listing
February 2015

MBD2 and MBD3: elusive functions and mechanisms.

Front Genet 2014 9;5:428. Epub 2014 Dec 9.

Department of Molecular Biology, Radboud University Nijmegen, Netherlands.

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http://dx.doi.org/10.3389/fgene.2014.00428DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4260518PMC
December 2014