Helen Fernandes

Helen Fernandes

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Helen Fernandes

Helen Fernandes

Publications by authors named "Helen Fernandes"

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58Publications

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Synchronous Pulmonary Adenocarcinomas.

Am J Clin Pathol 2020 Mar 8. Epub 2020 Mar 8.

Department of Pathology and Cell Biology, Columbia University Irving Medical Center/NewYork-Presbyterian Hospital, New York, NY.

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http://dx.doi.org/10.1093/ajcp/aqaa023DOI Listing
March 2020

Microsatellite instability detection using a large next-generation sequencing cancer panel across diverse tumour types.

J Clin Pathol 2020 Feb 17;73(2):83-89. Epub 2019 Sep 17.

Department of Pathology and Cell Biology, Columbia University Medical Center, New York City, New York, USA

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http://dx.doi.org/10.1136/jclinpath-2019-206136DOI Listing
February 2020

Performance Characteristics of a Targeted Sequencing Platform for Simultaneous Detection of Single Nucleotide Variants, Insertions/Deletions, Copy Number Alterations, and Gene Fusions in Cancer Genome.

Arch Pathol Lab Med 2020 Feb 11. Epub 2020 Feb 11.

From the Department of Pathology and Laboratory Medicine (Drs Park, Marrero Rolon, Scognamiglio, Borczuk, Mosquera, Pan, Rubin, Rennert, Fernandes, and Song) and Institute for Computational Biomedicine (Mr Eng, Mr Ramazanoglu, Dr Sboner, and Dr Elemento), Weill Cornell Medicine, New York, New York; Englander Institute for Precision Medicine (Mr Tran, Mr Eng, Mr Ramazanoglu, and Drs Mosquera, Pan, Sboner, Rubin, Elemento, and Song), Weill Cornell Medicine-New York Presbyterian Hospital, New York, New York. Drs Fernandes and Song are co-senior authors. Dr Park is now with the Department of Pathology, New York University, New York; Dr Pan, with Molecular Genetics, Caris Life Sciences, Phoenix, Arizona; Dr Rubin, with the Department for BioMedical Research, University of Bern, Bern, Switzerland; and Dr Fernandes, with the Department of Pathology and Cell Biology, Columbia University, New York, New York.

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http://dx.doi.org/10.5858/arpa.2019-0162-OADOI Listing
February 2020

Plasma-thrombin cell blocks: Potential source of DNA contamination.

Cancer Cytopathol 2019 Dec 22;127(12):771-777. Epub 2019 Nov 22.

Department of Pathology and Cell Biology, Columbia University Medical Center, New York, New York.

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http://dx.doi.org/10.1002/cncy.22203DOI Listing
December 2019

Modelling outcomes after paediatric brain injury with admission laboratory values: a machine-learning approach.

Pediatr Res 2019 11 26;86(5):641-645. Epub 2019 Jul 26.

Department of Paediatric Intensive Care, Addenbrooke's Hospital, University of Cambridge, Cambridge, UK.

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http://dx.doi.org/10.1038/s41390-019-0510-9DOI Listing
November 2019

Correction: Modelling outcomes after paediatric brain injury with admission laboratory values: a machine-learning approach.

Pediatr Res 2019 Nov;86(5):675

Department of Paediatric Intensive Care, Addenbrooke's Hospital, University of Cambridge, Cambridge, UK.

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http://dx.doi.org/10.1038/s41390-019-0545-yDOI Listing
November 2019

Colonic Mucosa With Polypoid Hyperplasia.

Am J Clin Pathol 2019 09;152(4):423-430

Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY.

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http://dx.doi.org/10.1093/ajcp/aqz053DOI Listing
September 2019

Targeting SLMAP-ALK-a novel gene fusion in lung adenocarcinoma.

Cold Spring Harb Mol Case Stud 2019 06 3;5(3). Epub 2019 Jun 3.

Laboratory of Personalized Genomic Medicine, Department of Pathology and Cell Biology, Columbia University Medical Center, New York, New York 10032, USA.

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http://dx.doi.org/10.1101/mcs.a003939DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6549559PMC
June 2019

Benign metastasizing leiomyoma presenting with miliary pattern and fatal outcome: Case report with molecular analysis & review of the literature.

Respir Med Case Rep 2019 28;27:100831. Epub 2019 Mar 28.

Department of Pathology and Cell Biology, Columbia University Medical Center, New York, USA.

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http://dx.doi.org/10.1016/j.rmcr.2019.100831DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6446132PMC
March 2019

Radiological Correlates of Raised Intracranial Pressure in Children: A Review.

Front Pediatr 2018 23;6:32. Epub 2018 Feb 23.

Department of Paediatric Intensive Care, Addenbrooke's Hospital, University of Cambridge, Cambridge, United Kingdom.

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http://dx.doi.org/10.3389/fped.2018.00032DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5829037PMC
February 2018

Glycemia Is Related to Impaired Cerebrovascular Autoregulation after Severe Pediatric Traumatic Brain Injury: A Retrospective Observational Study.

Front Pediatr 2017 25;5:205. Epub 2017 Sep 25.

Division of Academic Neurosurgery, Department of Clinical Neurosciences, Addenbrooke's Hospital, University of Cambridge, Cambridge, United Kingdom.

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http://dx.doi.org/10.3389/fped.2017.00205DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5622298PMC
September 2017

Accuracy of next-generation sequencing for the identification of clinically relevant variants in cytology smears in lung adenocarcinoma.

Cancer Cytopathol 2017 Jun 8;125(6):398-406. Epub 2017 Mar 8.

Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, New York.

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http://dx.doi.org/10.1002/cncy.21844DOI Listing
June 2017

Utility of Genomic Analysis in Differentiating Synchronous and Metachronous Lung Adenocarcinomas from Primary Adenocarcinomas with Intrapulmonary Metastasis.

Transl Oncol 2017 Jun 25;10(3):442-449. Epub 2017 Apr 25.

Department of Pathology and Laboratory Medicine, New York-Presbyterian Hospital-Weill Cornell Medicine, New York, NY 10065. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S19365233163027
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http://dx.doi.org/10.1016/j.tranon.2017.02.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5406583PMC
June 2017

Correlating optic nerve sheath diameter with opening intracranial pressure in pediatric traumatic brain injury.

Pediatr Res 2017 03 11;81(3):443-447. Epub 2016 Aug 11.

Division of Academic Neurosurgery, Department of Clinical Neurosciences, Addenbrooke's Hospital, University of Cambridge, Cambridge, UK.

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http://dx.doi.org/10.1038/pr.2016.165DOI Listing
March 2017

The application of adult traumatic brain injury models in a pediatric cohort.

J Neurosurg Pediatr 2016 Nov 26;18(5):558-564. Epub 2016 Aug 26.

Division of Academic Neurosurgery, Department of Clinical Neurosciences, and.

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http://dx.doi.org/10.3171/2016.5.PEDS15427DOI Listing
November 2016

Adolescent HIV viral load in an urban hospital in Newark, New Jersey.

Int J Pediatr Adolesc Med 2016 Sep 13;3(3):103-108. Epub 2016 May 13.

Departments of Medicine & Pediatrics, Rutgers New Jersey Medical School, MSB-C645, 185 S. Orange Ave, Newark, NJ 07103, United States.

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http://dx.doi.org/10.1016/j.ijpam.2016.04.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6372445PMC
September 2016

Imatinib Treatment of Lymphangiomatosis (Generalized Lymphatic Anomaly).

J Natl Compr Canc Netw 2016 04;14(4):383-6

Department of Medicine, Division of Pulmonary and Critical Care Medicine, Joan and Sanford I. Weill Medical College of Cornell University and The New York-Presbyterian Hospital Weill Cornell Medical Center, New York, New York

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http://dx.doi.org/10.6004/jnccn.2016.0045DOI Listing
April 2016

Development of a BK virus real-time quantitative assay using the bioMérieux analyte-specific reagents in plasma specimens.

Am J Clin Pathol 2015 Dec;144(6):909-15

From the Department of Pathology and Laboratory Medicine, NewYork-Presbyterian Hospital, New York, NY.

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http://dx.doi.org/10.1309/AJCPXKUGLG3Q3MPXDOI Listing
December 2015

Differentially expressed genes of virulent and nonvirulent Entamoeba histolytica strains identified by suppression subtractive hybridization.

Biomed Res Int 2014 17;2014:285607. Epub 2014 Sep 17.

Departamento de Parasitologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Avenida Antonio Carlos 6627, 31270-901 Belo Horizonte, MG, Brazil.

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http://dx.doi.org/10.1155/2014/285607DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4182305PMC
July 2015

Combined intracranial pressure monitoring and cerebrospinal fluid infusion study to guide management of slit ventricle syndrome.

Pediatr Neurosurg 2013 11;49(2):113-8. Epub 2014 Feb 11.

Academic Division of Neurosurgery, Departments of Clinical Neurosciences and Neurosurgery, Addenbrooke's Hospital, Cambridge, UK.

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http://dx.doi.org/10.1159/000358561DOI Listing
December 2014

Entamoeba histolytica: gene expression analysis of cells invading tissues.

ScientificWorldJournal 2014 27;2014:364264. Epub 2014 Jan 27.

Department of Parasitology, Institute of Biological Sciences, Universidade Federal de Minas Gerais, 31270-901 Belo Horizonte, MG, Brazil.

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http://dx.doi.org/10.1155/2014/364264DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3925561PMC
December 2014

Diffuse cerebral vasospasm following resection of a hypoglossal schwannoma in a child.

Br J Neurosurg 2014 Aug 19;28(4):541-3. Epub 2013 Dec 19.

Department of Neurosurgery, Addenbrooke's Hospital , University of Cambridge, Cambridge , UK.

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http://dx.doi.org/10.3109/02688697.2013.865705DOI Listing
August 2014

Molecular heterogeneity of head and neck squamous cell carcinoma defined by next-generation sequencing.

Am J Pathol 2014 May;184(5):1323-30

Department of Pathology and Laboratory Medicine, Rutgers Biomedical and Health Sciences-New Jersey Medical School, Newark, New Jersey. Electronic address:

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http://dx.doi.org/10.1016/j.ajpath.2014.01.028DOI Listing
May 2014

Successful use of Plasma Preparation Tubes™ (PPTs) in the COBAS® AmpliPrep/COBAS® TaqMan® HIV-1 test.

J Clin Virol 2013 May 16;57(1):77-9. Epub 2013 Jan 16.

Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA, USA.

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http://dx.doi.org/10.1016/j.jcv.2012.12.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3684267PMC
May 2013

Isolated hypoglossal schwannoma in a 9-year-old child.

J Neurosurg Pediatr 2012 Aug 22;10(2):130-3. Epub 2012 Jun 22.

Department of Neurosurgery, Addenbrooke's Hospital, University of Cambridge, United Kingdom.

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https://thejns.org/view/journals/j-neurosurg-pediatr/10/2/ar
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http://dx.doi.org/10.3171/2012.3.PEDS11555DOI Listing
August 2012

Transient perioperative brainstem paralysis secondary to a local anesthetic.

J Neurosurg Pediatr 2012 Jul 15;10(1):60-1. Epub 2012 Jun 15.

Neurosurgery Unit, Department of Clinical Neurosciences, University of Cambridge and Addenbrooke's Hospital, Cambridge, United Kingdom.

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http://dx.doi.org/10.3171/2012.3.PEDS11394DOI Listing
July 2012

Molecular signatures linked with aggressive behavior in basal cell carcinoma: a report of 6 cases.

Am J Dermatopathol 2010 Aug;32(6):550-6

Department of Pathology, Laboratory Medicine, New Jersey Medical School, University of Medicine and Dentistry of New Jersey, Newark, USA.

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http://dx.doi.org/10.1097/DAD.0b013e3181ca0ac2DOI Listing
August 2010

Evaluation of effect of specimen-handling parameters for plasma preparation tubes on viral load measurements obtained by using the Abbott RealTime HIV-1 load assay.

J Clin Microbiol 2010 Jul 19;48(7):2464-8. Epub 2010 May 19.

Department of Pathology, University of Medicine and Dentistry of New Jersey, New Jersey Medical School, Newark, NJ 07103, USA.

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http://dx.doi.org/10.1128/JCM.00083-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2897535PMC
July 2010

Meningioma recurrence: the efficacy and cost-effectiveness of current screening.

Br J Neurosurg 2010 Feb;24(1):55-61

NHS Lothian, Deaconess House, Edinburgh, UK.

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http://dx.doi.org/10.3109/02688690903431813DOI Listing
February 2010

Correcting miR-15a/16 genetic defect in New Zealand Black mouse model of CLL enhances drug sensitivity.

Mol Cancer Ther 2009 Sep 1;8(9):2684-92. Epub 2009 Sep 1.

Pathology and Laboratory Medicine, New Jersey Medical School, MSB C512, Newark, NJ 07103, USA.

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http://dx.doi.org/10.1158/1535-7163.MCT-09-0127DOI Listing
September 2009

Entamoeba histolytica: cysteine proteinase activity and virulence. Focus on cysteine proteinase 5 expression levels.

Exp Parasitol 2009 Aug 21;122(4):306-9. Epub 2009 Apr 21.

Departamento de Parasitologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Av. Antonio Carlos, 6627, 31270-901 Belo Horizonte, MG, Brazil.

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http://dx.doi.org/10.1016/j.exppara.2009.04.005DOI Listing
August 2009

Future of female doctors. Time to adapt the workplace.

Authors:
Helen Fernandes

BMJ 2009 Jun 29;338:b2608. Epub 2009 Jun 29.

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http://dx.doi.org/10.1136/bmj.b2608DOI Listing
June 2009

CSF rhinorrhea secondary to use of a Mayfield head clamp.

Ear Nose Throat J 2008 Jul;87(7):E1-3

Department of Neurosurgery/Otolaryngology, University of Cambridge, Addenbrookes NHS Trust, Cambridge, UK.

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July 2008

Destructive osteomyelitis associated with early secondary syphilis in an HIV-positive patient diagnosed by Treponema pallidum DNA polymerase chain reaction.

AIDS Patient Care STDS 2007 Apr;21(4):229-33

Department of Infectious Diseases, University of Medicine and Dentistry of New Jersey, Newark, New Jersey 07052, USA.

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http://dx.doi.org/10.1089/apc.2006.0084DOI Listing
April 2007

Woman aged 24 years with fourth ventricular mass.

Brain Pathol 2005 Oct;15(4):367-8, 373

Department of Neuropathology, Newcastle-upon-Tyne Hospitals Trust, Newcastle-upon-Tyne, United Kingdom.

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http://dx.doi.org/10.1111/j.1750-3639.2005.tb00122.xDOI Listing
October 2005

Cloning and characterization of the 5' flanking region of the HGFIN gene indicate a cooperative role among p53 and cytokine-mediated transcription factors: relevance to cell cycle regulation.

Cell Cycle 2005 Feb 13;4(2):315-22. Epub 2005 Feb 13.

1Department of Medicine and Graduate School of Biomedical Sciences, UMDNJ-New Jersey Medical School, Newark, New Jersey 07103 USA.

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February 2005

Evidence of Borrelia autoimmunity-induced component of Lyme carditis and arthritis.

J Clin Microbiol 2005 Feb;43(2):850-6

Department of Pathology, New Jersey Medical School, University of Medicine and Dentistry of New Jersey, 185 S. Orange Ave., Newark, NJ 07103, USA.

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http://jcm.asm.org/cgi/doi/10.1128/JCM.43.2.850-856.2005
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http://dx.doi.org/10.1128/JCM.43.2.850-856.2005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC548028PMC
February 2005

Oncoproteins and proliferation markers in synovial sarcomas: a clinicopathologic study of 19 cases.

J Cancer Res Clin Oncol 2002 Nov 29;128(11):610-6. Epub 2002 Oct 29.

Department of Pathology, UMDNJ-New Jersey Medical School, 185 South Orange Ave., Newark, N.J., USA.

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http://dx.doi.org/10.1007/s00432-002-0389-3DOI Listing
November 2002

Testing the ICH score.

Stroke 2002 Jun;33(6):1455-6; author reply 1455-6

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http://dx.doi.org/10.1161/01.str.0000018666.74574.9bDOI Listing
June 2002

Investigation of promoter polymorphisms in the tumor necrosis factor-alpha and interleukin-10 genes in liver transplant patients.

Transplantation 2002 Jun;73(12):1886-91

Department of Pathology and Laboratory Medicine, UMDNJ-New Jersey Medical School, Newark, New Jersey 07103, USA.

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http://dx.doi.org/10.1097/00007890-200206270-00006DOI Listing
June 2002

Reversible ischemia around intracerebral hemorrhage: a single-photon emission computerized tomography study.

J Neurosurg 2002 Apr;96(4):736-41

Department of Neurosurgery, University of Newcastle, Newcastle-upon-Tyne, United Kingdom.

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http://thejns.org/doi/10.3171/jns.2002.96.4.0736
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http://dx.doi.org/10.3171/jns.2002.96.4.0736DOI Listing
April 2002

Comparative study of traumatic and spontaneous intracerebral hemorrhage.

J Neurosurg 2002 Jan;96(1):86-9

Department of Neurosurgery, University of Newcastle, Newcastle General Hospital, Newcastle-upon-Tyne, United Kingdom.

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https://thejns.org/view/journals/j-neurosurg/96/1/article-p8
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http://dx.doi.org/10.3171/jns.2002.96.1.0086DOI Listing
January 2002