Heinz Himmelbauer

Heinz Himmelbauer

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Heinz Himmelbauer

Heinz Himmelbauer

Publications by authors named "Heinz Himmelbauer"

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Genomes of the wild beets Beta patula and Beta vulgaris ssp. maritima.

Plant J 2019 Sep 15;99(6):1242-1253. Epub 2019 Jul 15.

University of Natural Resources and Life Sciences (BOKU), 1190, Vienna, Austria.

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http://dx.doi.org/10.1111/tpj.14413DOI Listing
September 2019

Genome and transcriptome characterization of the glycoengineered Nicotiana benthamiana line ΔXT/FT.

BMC Genomics 2019 Jul 19;20(1):594. Epub 2019 Jul 19.

Department of Biotechnology, University of Natural Resources and Life Sciences (BOKU), Muthgasse 18, 1190, Vienna, Austria.

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http://dx.doi.org/10.1186/s12864-019-5960-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6642603PMC
July 2019

nextPARS: parallel probing of RNA structures in Illumina.

RNA 2018 04 22;24(4):609-619. Epub 2018 Jan 22.

Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona 08003, Spain.

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http://dx.doi.org/10.1261/rna.063073.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5855959PMC
April 2018

Comparative transcriptome analysis of a Trichoplusia ni cell line reveals distinct host responses to intracellular and secreted protein products expressed by recombinant baculoviruses.

J Biotechnol 2018 Mar 9;270:61-69. Epub 2018 Feb 9.

Department of Biotechnology, University of Natural Resources and Life Sciences, Muthgasse 18, 1190 Vienna, Austria; acib - Austrian Centre of Industrial Biotechnology, Muthgasse 11, 1190 Vienna, Austria. Electronic address:

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http://dx.doi.org/10.1016/j.jbiotec.2018.02.001DOI Listing
March 2018

Haplotype selection as an adaptive mechanism in the protozoan pathogen Leishmania donovani.

Nat Ecol Evol 2017 Dec 6;1(12):1961-1969. Epub 2017 Nov 6.

Institut Pasteur, INSERM U1201, Unité de Parasitologie Moléculaire et Signalisation, 75015, Paris, France.

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http://dx.doi.org/10.1038/s41559-017-0361-xDOI Listing
December 2017

Oligoadenylation of 3' decay intermediates promotes cytoplasmic mRNA degradation in Drosophila cells.

RNA 2016 Mar 19;22(3):428-42. Epub 2016 Jan 19.

Institute of Biochemistry and Biotechnology, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany.

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http://dx.doi.org/10.1261/rna.053942.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4748820PMC
March 2016

The 474-Kilobase-Pair Complete Genome Sequence of CeV-01B, a Virus Infecting Haptolina (Chrysochromulina) ericina (Prymnesiophyceae).

Genome Announc 2015 Dec 3;3(6). Epub 2015 Dec 3.

Structural and Genomic Information Laboratory (IGS), Aix-Marseille Université, CNRS UMR 7256 (IMM FR 3479), Marseille, France Assistance Publique des Hôpitaux de Marseille (APHM), Marseille, France

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http://genomea.asm.org/content/3/6/e01413-15.full.pdf
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http://genomea.asm.org/lookup/doi/10.1128/genomeA.01413-15
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http://dx.doi.org/10.1128/genomeA.01413-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4669402PMC
December 2015

Cytosine methylation of an ancient satellite family in the wild beet Beta procumbens.

Cytogenet Genome Res 2014 27;143(1-3):157-67. Epub 2014 Jun 27.

Department of Plant Cell and Molecular Biology, TU Dresden, Dresden, Germany.

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https://www.karger.com/Article/FullText/363485
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http://dx.doi.org/10.1159/000363485DOI Listing
October 2014

Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades.

Plant J 2014 Aug 2;79(3):385-97. Epub 2014 Jul 2.

Institute of Botany, Technische Universität Dresden, 01069, Dresden, Germany.

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http://doi.wiley.com/10.1111/tpj.12565
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http://dx.doi.org/10.1111/tpj.12565DOI Listing
August 2014

The CHH motif in sugar beet satellite DNA: a modulator for cytosine methylation.

Plant J 2014 Jun 21;78(6):937-50. Epub 2014 May 21.

Department of Plant Cell and Molecular Biology, TU Dresden, D-01062, Dresden, Germany.

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http://dx.doi.org/10.1111/tpj.12519DOI Listing
June 2014

Determination of sulfotransferase forms involved in the metabolic activation of the genotoxicant 1-hydroxymethylpyrene using bacterially expressed enzymes and genetically modified mouse models.

Chem Res Toxicol 2014 Jun 22;27(6):1060-9. Epub 2014 May 22.

Department of Nutritional Toxicology, German Institute of Human Nutrition Potsdam-Rehbrücke (DIfE) , Arthur-Scheunert-Allee 114-116, 14558 Nuthetal, Germany.

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http://dx.doi.org/10.1021/tx500129gDOI Listing
June 2014

Differential expression patterns of non-symbiotic hemoglobins in sugar beet (Beta vulgaris ssp. vulgaris).

Plant Cell Physiol 2014 Apr 30;55(4):834-44. Epub 2014 Jan 30.

Department of Pure and Applied Biochemistry, Lund University, Box 124, 221.00 Lund, Sweden.

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https://academic.oup.com/pcp/article-lookup/doi/10.1093/pcp/
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http://dx.doi.org/10.1093/pcp/pcu027DOI Listing
April 2014

Klf4 and Klf5 differentially inhibit mesoderm and endoderm differentiation in embryonic stem cells.

Nat Commun 2014 Apr 28;5:3719. Epub 2014 Apr 28.

1] Inserm, U846, 18 Avenue Doyen Lepine, Bron 69500, France [2] Stem Cell and Brain Research Institute, Bron 69500, France [3] Université de Lyon, Université Lyon 1, Lyon 69003, France.

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http://dx.doi.org/10.1038/ncomms4719DOI Listing
April 2014

The genome of the recently domesticated crop plant sugar beet (Beta vulgaris).

Nature 2014 Jan 18;505(7484):546-9. Epub 2013 Dec 18.

1] Max Planck Institute for Molecular Genetics, Ihnestraße 63-73, 14195 Berlin, Germany [2] Centre for Genomic Regulation (CRG), C. Dr. Aiguader 88, 08003 Barcelona, Spain [3] Universitat Pompeu Fabra (UPF), C. Dr. Aiguader 88, 08003 Barcelona, Spain.

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http://dx.doi.org/10.1038/nature12817DOI Listing
January 2014

Conventional knockout of Tbc1d1 in mice impairs insulin- and AICAR-stimulated glucose uptake in skeletal muscle.

Endocrinology 2013 Oct 26;154(10):3502-14. Epub 2013 Jul 26.

Institute for Clinical Biochemistry and Pathobiochemistry, German Diabetes Center, Leibniz Center for Diabetes Research at the Heinrich-Heine-University Düsseldorf, Auf'm Hennekamp 65, 40225 Düsseldorf, Germany.

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http://dx.doi.org/10.1210/en.2012-2147DOI Listing
October 2013

Comparative transcriptomics of early dipteran development.

BMC Genomics 2013 Feb 24;14:123. Epub 2013 Feb 24.

EMBL/CRG Research Unit in Systems Biology, Centre de Regulació Genòmica (CRG), and Universitat Pompeu Fabra (UPF), Barcelona, Spain.

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http://dx.doi.org/10.1186/1471-2164-14-123DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3616871PMC
February 2013

Induction and selection of Sox17-expressing endoderm cells generated from murine embryonic stem cells.

Cells Tissues Organs 2012 25;195(6):507-23. Epub 2011 Nov 25.

Leibniz Institute of Plant Genetics and Crop Plant Research Gatersleben, Germany.

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http://dx.doi.org/10.1159/000329864DOI Listing
November 2012

Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome.

Plant J 2012 Nov 24;72(4):636-51. Epub 2012 Sep 24.

Department of Biology, Dresden University of Technology, D-01062, Dresden, Germany.

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http://doi.wiley.com/10.1111/j.1365-313X.2012.05107.x
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http://dx.doi.org/10.1111/j.1365-313X.2012.05107.xDOI Listing
November 2012

Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives.

Plant Mol Biol 2012 Mar 13;78(4-5):393-405. Epub 2012 Jan 13.

Institute of Botany, Dresden University of Technology, 01062 Dresden, Germany.

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http://dx.doi.org/10.1007/s11103-011-9872-zDOI Listing
March 2012

Role of medium- and short-chain L-3-hydroxyacyl-CoA dehydrogenase in the regulation of body weight and thermogenesis.

Endocrinology 2011 Dec 11;152(12):4641-51. Epub 2011 Oct 11.

Department of Experimental Diabetology and Pharmacology, German Institute of Human Nutrition, Potsdam-Rehbruecke, Arthur-Scheunert-Allee 114-116, D-14558 Nuthetal, Germany.

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http://dx.doi.org/10.1210/en.2011-1547DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3359510PMC
December 2011

Altered tissue distribution of 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine-DNA adducts in mice transgenic for human sulfotransferases 1A1 and 1A2.

Carcinogenesis 2011 Nov 7;32(11):1734-40. Epub 2011 Sep 7.

German Institute of Human Nutrition Potsdam-Rehbruecke, Department of Nutritional Toxicology, Arthur-Scheunert-Allee 114-116, 14558 Nuthetal, Germany.

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http://dx.doi.org/10.1093/carcin/bgr204DOI Listing
November 2011

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems.

Genome Biol 2011 Nov 8;12(11):R112. Epub 2011 Nov 8.

Centre for Genomic Regulation (CRG), Barcelona, Spain.

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http://dx.doi.org/10.1186/gb-2011-12-11-r112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3334598PMC
November 2011

Epigenetic profiling of heterochromatic satellite DNA.

Chromosoma 2011 Aug 19;120(4):409-22. Epub 2011 May 19.

Department of Biology, Dresden University of Technology, Germany.

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http://link.springer.com/10.1007/s00412-011-0325-x
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http://dx.doi.org/10.1007/s00412-011-0325-xDOI Listing
August 2011

Expression analysis of proline rich 15 (Prr15) in mouse and human gastrointestinal tumors.

Mol Carcinog 2011 Jan;50(1):8-15

Department of Human Molecular Genetics, Max Planck Institute for Molecular Genetics (MPIMG), Berlin, Germany.

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http://dx.doi.org/10.1002/mc.20692DOI Listing
January 2011

High-throughput identification of genetic markers using representational oligonucleotide microarray analysis.

Theor Appl Genet 2010 Aug 9;121(3):549-65. Epub 2010 Apr 9.

Max Planck Institute for Molecular Genetics, Ihnestr. 63-73, 14195, Berlin, Germany.

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http://dx.doi.org/10.1007/s00122-010-1329-2DOI Listing
August 2010

Strand-specific deep sequencing of the transcriptome.

Genome Res 2010 Jul 2;20(7):989-99. Epub 2010 Jun 2.

Centre for Genomic Regulation (CRG), UPF, 08003 Barcelona, Spain.

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http://genome.cshlp.org/cgi/doi/10.1101/gr.094318.109
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http://dx.doi.org/10.1101/gr.094318.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2892100PMC
July 2010

International network of cancer genome projects.

Authors:
Thomas J Hudson Warwick Anderson Axel Artez Anna D Barker Cindy Bell Rosa R Bernabé M K Bhan Fabien Calvo Iiro Eerola Daniela S Gerhard Alan Guttmacher Mark Guyer Fiona M Hemsley Jennifer L Jennings David Kerr Peter Klatt Patrik Kolar Jun Kusada David P Lane Frank Laplace Lu Youyong Gerd Nettekoven Brad Ozenberger Jane Peterson T S Rao Jacques Remacle Alan J Schafer Tatsuhiro Shibata Michael R Stratton Joseph G Vockley Koichi Watanabe Huanming Yang Matthew M F Yuen Bartha M Knoppers Martin Bobrow Anne Cambon-Thomsen Lynn G Dressler Stephanie O M Dyke Yann Joly Kazuto Kato Karen L Kennedy Pilar Nicolás Michael J Parker Emmanuelle Rial-Sebbag Carlos M Romeo-Casabona Kenna M Shaw Susan Wallace Georgia L Wiesner Nikolajs Zeps Peter Lichter Andrew V Biankin Christian Chabannon Lynda Chin Bruno Clément Enrique de Alava Françoise Degos Martin L Ferguson Peter Geary D Neil Hayes Thomas J Hudson Amber L Johns Arek Kasprzyk Hidewaki Nakagawa Robert Penny Miguel A Piris Rajiv Sarin Aldo Scarpa Tatsuhiro Shibata Marc van de Vijver P Andrew Futreal Hiroyuki Aburatani Mónica Bayés David D L Botwell Peter J Campbell Xavier Estivill Daniela S Gerhard Sean M Grimmond Ivo Gut Martin Hirst Carlos López-Otín Partha Majumder Marco Marra John D McPherson Hidewaki Nakagawa Zemin Ning Xose S Puente Yijun Ruan Tatsuhiro Shibata Michael R Stratton Hendrik G Stunnenberg Harold Swerdlow Victor E Velculescu Richard K Wilson Hong H Xue Liu Yang Paul T Spellman Gary D Bader Paul C Boutros Peter J Campbell Paul Flicek Gad Getz Roderic Guigó Guangwu Guo David Haussler Simon Heath Tim J Hubbard Tao Jiang Steven M Jones Qibin Li Nuria López-Bigas Ruibang Luo Lakshmi Muthuswamy B F Francis Ouellette John V Pearson Xose S Puente Victor Quesada Benjamin J Raphael Chris Sander Tatsuhiro Shibata Terence P Speed Lincoln D Stein Joshua M Stuart Jon W Teague Yasushi Totoki Tatsuhiko Tsunoda Alfonso Valencia David A Wheeler Honglong Wu Shancen Zhao Guangyu Zhou Lincoln D Stein Roderic Guigó Tim J Hubbard Yann Joly Steven M Jones Arek Kasprzyk Mark Lathrop Nuria López-Bigas B F Francis Ouellette Paul T Spellman Jon W Teague Gilles Thomas Alfonso Valencia Teruhiko Yoshida Karen L Kennedy Myles Axton Stephanie O M Dyke P Andrew Futreal Daniela S Gerhard Chris Gunter Mark Guyer Thomas J Hudson John D McPherson Linda J Miller Brad Ozenberger Kenna M Shaw Arek Kasprzyk Lincoln D Stein Junjun Zhang Syed A Haider Jianxin Wang Christina K Yung Anthony Cros Anthony Cross Yong Liang Saravanamuttu Gnaneshan Jonathan Guberman Jack Hsu Martin Bobrow Don R C Chalmers Karl W Hasel Yann Joly Terry S H Kaan Karen L Kennedy Bartha M Knoppers William W Lowrance Tohru Masui Pilar Nicolás Emmanuelle Rial-Sebbag Laura Lyman Rodriguez Catherine Vergely Teruhiko Yoshida Sean M Grimmond Andrew V Biankin David D L Bowtell Nicole Cloonan Anna deFazio James R Eshleman Dariush Etemadmoghadam Brooke B Gardiner Brooke A Gardiner James G Kench Aldo Scarpa Robert L Sutherland Margaret A Tempero Nicola J Waddell Peter J Wilson John D McPherson Steve Gallinger Ming-Sound Tsao Patricia A Shaw Gloria M Petersen Debabrata Mukhopadhyay Lynda Chin Ronald A DePinho Sarah Thayer Lakshmi Muthuswamy Kamran Shazand Timothy Beck Michelle Sam Lee Timms Vanessa Ballin Youyong Lu Jiafu Ji Xiuqing Zhang Feng Chen Xueda Hu Guangyu Zhou Qi Yang Geng Tian Lianhai Zhang Xiaofang Xing Xianghong Li Zhenggang Zhu Yingyan Yu Jun Yu Huanming Yang Mark Lathrop Jörg Tost Paul Brennan Ivana Holcatova David Zaridze Alvis Brazma Lars Egevard Egor Prokhortchouk Rosamonde Elizabeth Banks Mathias Uhlén Anne Cambon-Thomsen Juris Viksna Fredrik Ponten Konstantin Skryabin Michael R Stratton P Andrew Futreal Ewan Birney Ake Borg Anne-Lise Børresen-Dale Carlos Caldas John A Foekens Sancha Martin Jorge S Reis-Filho Andrea L Richardson Christos Sotiriou Hendrik G Stunnenberg Giles Thoms Marc van de Vijver Laura van't Veer Fabien Calvo Daniel Birnbaum Hélène Blanche Pascal Boucher Sandrine Boyault Christian Chabannon Ivo Gut Jocelyne D Masson-Jacquemier Mark Lathrop Iris Pauporté Xavier Pivot Anne Vincent-Salomon Eric Tabone Charles Theillet Gilles Thomas Jörg Tost Isabelle Treilleux Fabien Calvo Paulette Bioulac-Sage Bruno Clément Thomas Decaens Françoise Degos Dominique Franco Ivo Gut Marta Gut Simon Heath Mark Lathrop Didier Samuel Gilles Thomas Jessica Zucman-Rossi Peter Lichter Roland Eils Benedikt Brors Jan O Korbel Andrey Korshunov Pablo Landgraf Hans Lehrach Stefan Pfister Bernhard Radlwimmer Guido Reifenberger Michael D Taylor Christof von Kalle Partha P Majumder Rajiv Sarin T S Rao M K Bhan Aldo Scarpa Paolo Pederzoli Rita A Lawlor Massimo Delledonne Alberto Bardelli Andrew V Biankin Sean M Grimmond Thomas Gress David Klimstra Giuseppe Zamboni Tatsuhiro Shibata Yusuke Nakamura Hidewaki Nakagawa Jun Kusada Tatsuhiko Tsunoda Satoru Miyano Hiroyuki Aburatani Kazuto Kato Akihiro Fujimoto Teruhiko Yoshida Elias Campo Carlos López-Otín Xavier Estivill Roderic Guigó Silvia de Sanjosé Miguel A Piris Emili Montserrat Marcos González-Díaz Xose S Puente Pedro Jares Alfonso Valencia Heinz Himmelbauer Heinz Himmelbaue Victor Quesada Silvia Bea Michael R Stratton P Andrew Futreal Peter J Campbell Anne Vincent-Salomon Andrea L Richardson Jorge S Reis-Filho Marc van de Vijver Gilles Thomas Jocelyne D Masson-Jacquemier Samuel Aparicio Ake Borg Anne-Lise Børresen-Dale Carlos Caldas John A Foekens Hendrik G Stunnenberg Laura van't Veer Douglas F Easton Paul T Spellman Sancha Martin Anna D Barker Lynda Chin Francis S Collins Carolyn C Compton Martin L Ferguson Daniela S Gerhard Gad Getz Chris Gunter Alan Guttmacher Mark Guyer D Neil Hayes Eric S Lander Brad Ozenberger Robert Penny Jane Peterson Chris Sander Kenna M Shaw Terence P Speed Paul T Spellman Joseph G Vockley David A Wheeler Richard K Wilson Thomas J Hudson Lynda Chin Bartha M Knoppers Eric S Lander Peter Lichter Lincoln D Stein Michael R Stratton Warwick Anderson Anna D Barker Cindy Bell Martin Bobrow Wylie Burke Francis S Collins Carolyn C Compton Ronald A DePinho Douglas F Easton P Andrew Futreal Daniela S Gerhard Anthony R Green Mark Guyer Stanley R Hamilton Tim J Hubbard Olli P Kallioniemi Karen L Kennedy Timothy J Ley Edison T Liu Youyong Lu Partha Majumder Marco Marra Brad Ozenberger Jane Peterson Alan J Schafer Paul T Spellman Hendrik G Stunnenberg Brandon J Wainwright Richard K Wilson Huanming Yang

Nature 2010 Apr;464(7291):993-8

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http://dx.doi.org/10.1038/nature08987DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2902243PMC
April 2010

Global transcriptomic analysis of murine embryonic stem cell-derived brachyury(+) (T) cells.

Genes Cells 2010 Mar 24;15(3):209-28. Epub 2010 Feb 24.

Center of Physiology and Pathophysiology, Institute of Neurophysiology, and Center of Molecular Medicine, University of Cologne (CMMC), Robert-Koch Str. 39, 50931 Cologne, GermanyMax-Delbrueck-Center for Molecular Medicine - MDC, Robert-Rössle Str. 10, 13092 Berlin, GermanyInstitute of Computer Science, University of Tartu, Liivi 2, 50409 Tartu, Estonia and Quretec Ltd, Ulikooli 6a, Tartu, EstoniaDepartment of Vertebrate Genomics, Max-Planck-Institute for Molecular Genetics, Ihnestr.73, D-14195 Berlin, Germany.

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http://dx.doi.org/10.1111/j.1365-2443.2010.01390.xDOI Listing
March 2010

Cloning of mouse ojoplano, a reticular cytoplasmic protein expressed during embryonic development.

Gene Expr Patterns 2009 Dec 18;9(8):562-7. Epub 2009 Sep 18.

Max Planck Institute for Molecular Genetics, Berlin, Germany.

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http://dx.doi.org/10.1016/j.gep.2009.09.003DOI Listing
December 2009

A mouse translocation associated with Caspr5-2 disruption and perinatal lethality.

Mamm Genome 2008 Oct-Dec;19(10-12):675-86. Epub 2008 Oct 24.

Deutsches Krebsforschungszentrum, 69120 Heidelberg, Germany.

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http://dx.doi.org/10.1007/s00335-008-9148-3DOI Listing
March 2009

Haplotype divergence in Beta vulgaris and microsynteny with sequenced plant genomes.

Plant J 2009 Jan 29;57(1):14-26. Epub 2008 Aug 29.

Max Planck Institute for Molecular Genetics, Ihnestrasse 63-73, Berlin, Germany.

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http://doi.wiley.com/10.1111/j.1365-313X.2008.03665.x
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http://dx.doi.org/10.1111/j.1365-313X.2008.03665.xDOI Listing
January 2009

Neuronal functions, feeding behavior, and energy balance in Slc2a3+/- mice.

Am J Physiol Endocrinol Metab 2008 Nov 9;295(5):E1084-94. Epub 2008 Sep 9.

Department of Pharmacology, German Institute of Human Nutrition Potsdam-Rehbruecke, Nuthetal, Germany.

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http://dx.doi.org/10.1152/ajpendo.90491.2008DOI Listing
November 2008

Construction and characterization of a sugar beet (Beta vulgaris) fosmid library.

Genome 2008 Nov;51(11):948-51

Max Planck Institute for Molecular Genetics, Ihnestr. 63-73, 14195 Berlin, Germany.

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http://www.nrcresearchpress.com/doi/10.1139/G08-071
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http://dx.doi.org/10.1139/G08-071DOI Listing
November 2008

Characterizing the mouse ES cell transcriptome with Illumina sequencing.

Genomics 2008 Oct 3;92(4):187-94. Epub 2008 Aug 3.

Max Planck Institute for Molecular Genetics, Ihnestrasse 63-73, Berlin, Germany.

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http://dx.doi.org/10.1016/j.ygeno.2008.05.011DOI Listing
October 2008

Pronounced alterations of cellular metabolism and structure due to hyper- or hypo-osmosis.

J Proteome Res 2008 Sep 23;7(9):3968-83. Epub 2008 Jul 23.

Institute for Human Genetics, Charite-University Medicine Berlin, Germany, and Max Planck Institute for Molecular Genetics, Berlin, Germany.

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http://dx.doi.org/10.1021/pr800245xDOI Listing
September 2008

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing.

Nucleic Acids Res 2008 Sep 26;36(16):e105. Epub 2008 Jul 26.

Max Planck Institute for Molecular Genetics, Ihnestr. 63-73, 14195 Berlin, Germany.

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http://dx.doi.org/10.1093/nar/gkn425DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2532726PMC
September 2008

SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing.

Genome Res 2007 Nov 1;17(11):1697-706. Epub 2007 Oct 1.

Max-Planck-Institute for Molecular Genetics, 14195 Berlin-Dahlem, Germany.

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http://www.genome.org/cgi/doi/10.1101/gr.6435207
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http://dx.doi.org/10.1101/gr.6435207DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2045152PMC
November 2007

Mobilization and evolutionary history of miniature inverted-repeat transposable elements (MITEs) in Beta vulgaris L.

Chromosome Res 2006 19;14(8):831-44. Epub 2007 Jan 19.

Institute of Botany, Dresden University of Technology, D-01062, Dresden, Germany.

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http://dx.doi.org/10.1007/s10577-006-1090-1DOI Listing
March 2007

New members of the neurexin superfamily: multiple rodent homologues of the human CASPR5 gene.

Mamm Genome 2006 Jul 14;17(7):723-31. Epub 2006 Jul 14.

Institut für Biologie, Zentrum für medizinische Struktur- und Zellbiologie, Universität zu Lübeck, Ratzeburger Allee 160, D-23538 Lübeck, Germany.

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http://dx.doi.org/10.1007/s00335-005-0157-1DOI Listing
July 2006

Mouse splice mutant generation from ENU-treated ES cells--a gene-driven approach.

Genomics 2005 May;85(5):557-62

Department of Vertebrate Genomics, Max-Planck-Institute of Molecular Genetics, Ihnestrasse 73, 14195 Berlin, Germany.

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http://dx.doi.org/10.1016/j.ygeno.2005.01.011DOI Listing
May 2005

The Collaborative Cross, a community resource for the genetic analysis of complex traits.

Authors:
Gary A Churchill David C Airey Hooman Allayee Joe M Angel Alan D Attie Jackson Beatty William D Beavis John K Belknap Beth Bennett Wade Berrettini Andre Bleich Molly Bogue Karl W Broman Kari J Buck Ed Buckler Margit Burmeister Elissa J Chesler James M Cheverud Steven Clapcote Melloni N Cook Roger D Cox John C Crabbe Wim E Crusio Ariel Darvasi Christian F Deschepper R W Doerge Charles R Farber Jiri Forejt Daniel Gaile Steven J Garlow Hartmut Geiger Howard Gershenfeld Terry Gordon Jing Gu Weikuan Gu Gerald de Haan Nancy L Hayes Craig Heller Heinz Himmelbauer Robert Hitzemann Kent Hunter Hui-Chen Hsu Fuad A Iraqi Boris Ivandic Howard J Jacob Ritsert C Jansen Karl J Jepsen Dabney K Johnson Thomas E Johnson Gerd Kempermann Christina Kendziorski Malak Kotb R Frank Kooy Bastien Llamas Frank Lammert Jean-Michel Lassalle Pedro R Lowenstein Lu Lu Aldons Lusis Kenneth F Manly Ralph Marcucio Doug Matthews Juan F Medrano Darla R Miller Guy Mittleman Beverly A Mock Jeffrey S Mogil Xavier Montagutelli Grant Morahan David G Morris Richard Mott Joseph H Nadeau Hiroki Nagase Richard S Nowakowski Bruce F O'Hara Alexander V Osadchuk Grier P Page Beverly Paigen Kenneth Paigen Abraham A Palmer Huei-Ju Pan Leena Peltonen-Palotie Jeremy Peirce Daniel Pomp Michal Pravenec Daniel R Prows Zhonghua Qi Roger H Reeves John Roder Glenn D Rosen Eric E Schadt Leonard C Schalkwyk Ze'ev Seltzer Kazuhiro Shimomura Siming Shou Mikko J Sillanpää Linda D Siracusa Hans-Willem Snoeck Jimmy L Spearow Karen Svenson Lisa M Tarantino David Threadgill Linda A Toth William Valdar Fernando Pardo-Manuel de Villena Craig Warden Steve Whatley Robert W Williams Tim Wiltshire Nengjun Yi Dabao Zhang Min Zhang Fei Zou

Nat Genet 2004 Nov;36(11):1133-7

The Jackson Laboratory, 600 Main Street Bar Harbor, Maine 04609, USA.

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http://dx.doi.org/10.1038/ng1104-1133DOI Listing
November 2004

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Authors:
Richard A Gibbs George M Weinstock Michael L Metzker Donna M Muzny Erica J Sodergren Steven Scherer Graham Scott David Steffen Kim C Worley Paula E Burch Geoffrey Okwuonu Sandra Hines Lora Lewis Christine DeRamo Oliver Delgado Shannon Dugan-Rocha George Miner Margaret Morgan Alicia Hawes Rachel Gill Celera Robert A Holt Mark D Adams Peter G Amanatides Holly Baden-Tillson Mary Barnstead Soo Chin Cheryl A Evans Steve Ferriera Carl Fosler Anna Glodek Zhiping Gu Don Jennings Cheryl L Kraft Trixie Nguyen Cynthia M Pfannkoch Cynthia Sitter Granger G Sutton J Craig Venter Trevor Woodage Douglas Smith Hong-Mei Lee Erik Gustafson Patrick Cahill Arnold Kana Lynn Doucette-Stamm Keith Weinstock Kim Fechtel Robert B Weiss Diane M Dunn Eric D Green Robert W Blakesley Gerard G Bouffard Pieter J De Jong Kazutoyo Osoegawa Baoli Zhu Marco Marra Jacqueline Schein Ian Bosdet Chris Fjell Steven Jones Martin Krzywinski Carrie Mathewson Asim Siddiqui Natasja Wye John McPherson Shaying Zhao Claire M Fraser Jyoti Shetty Sofiya Shatsman Keita Geer Yixin Chen Sofyia Abramzon William C Nierman Paul H Havlak Rui Chen K James Durbin Amy Egan Yanru Ren Xing-Zhi Song Bingshan Li Yue Liu Xiang Qin Simon Cawley Kim C Worley A J Cooney Lisa M D'Souza Kirt Martin Jia Qian Wu Manuel L Gonzalez-Garay Andrew R Jackson Kenneth J Kalafus Michael P McLeod Aleksandar Milosavljevic Davinder Virk Andrei Volkov David A Wheeler Zhengdong Zhang Jeffrey A Bailey Evan E Eichler Eray Tuzun Ewan Birney Emmanuel Mongin Abel Ureta-Vidal Cara Woodwark Evgeny Zdobnov Peer Bork Mikita Suyama David Torrents Marina Alexandersson Barbara J Trask Janet M Young Hui Huang Huajun Wang Heming Xing Sue Daniels Darryl Gietzen Jeanette Schmidt Kristian Stevens Ursula Vitt Jim Wingrove Francisco Camara M Mar Albà Josep F Abril Roderic Guigo Arian Smit Inna Dubchak Edward M Rubin Olivier Couronne Alexander Poliakov Norbert Hübner Detlev Ganten Claudia Goesele Oliver Hummel Thomas Kreitler Young-Ae Lee Jan Monti Herbert Schulz Heike Zimdahl Heinz Himmelbauer Hans Lehrach Howard J Jacob Susan Bromberg Jo Gullings-Handley Michael I Jensen-Seaman Anne E Kwitek Jozef Lazar Dean Pasko Peter J Tonellato Simon Twigger Chris P Ponting Jose M Duarte Stephen Rice Leo Goodstadt Scott A Beatson Richard D Emes Eitan E Winter Caleb Webber Petra Brandt Gerald Nyakatura Margaret Adetobi Francesca Chiaromonte Laura Elnitski Pallavi Eswara Ross C Hardison Minmei Hou Diana Kolbe Kateryna Makova Webb Miller Anton Nekrutenko Cathy Riemer Scott Schwartz James Taylor Shan Yang Yi Zhang Klaus Lindpaintner T Dan Andrews Mario Caccamo Michele Clamp Laura Clarke Valerie Curwen Richard Durbin Eduardo Eyras Stephen M Searle Gregory M Cooper Serafim Batzoglou Michael Brudno Arend Sidow Eric A Stone J Craig Venter Bret A Payseur Guillaume Bourque Carlos López-Otín Xose S Puente Kushal Chakrabarti Sourav Chatterji Colin Dewey Lior Pachter Nicolas Bray Von Bing Yap Anat Caspi Glenn Tesler Pavel A Pevzner David Haussler Krishna M Roskin Robert Baertsch Hiram Clawson Terrence S Furey Angie S Hinrichs Donna Karolchik William J Kent Kate R Rosenbloom Heather Trumbower Matt Weirauch David N Cooper Peter D Stenson Bin Ma Michael Brent Manimozhiyan Arumugam David Shteynberg Richard R Copley Martin S Taylor Harold Riethman Uma Mudunuri Jane Peterson Mark Guyer Adam Felsenfeld Susan Old Stephen Mockrin Francis Collins

Nature 2004 Apr;428(6982):493-521

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, Houston, Texas 77030, USA. http://www.hgsc.bcm.tmc.edu

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http://dx.doi.org/10.1038/nature02426DOI Listing
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The nature and identification of quantitative trait loci: a community's view.

Nat Rev Genet 2003 Nov;4(11):911-6

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http://dx.doi.org/10.1038/nrg1206DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063446PMC
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Characterization of trimethylpsoralen as a mutagen for mouse embryonic stem cells.

Mutat Res 2003 Apr;525(1-2):67-76

Max-Planck-Institute of Molecular Genetics, Ihnestr 73, D-14195 Berlin, Germany.

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http://dx.doi.org/10.1016/s0027-5107(02)00316-0DOI Listing
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Fish genomes flying. Symposium on Medaka Genomics.

EMBO Rep 2003 Feb;4(2):121-5

University of Tokyo, School of Science, 5-1-5 Kashiwanoha, Kashiwa City 277-8562, Japan.

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http://dx.doi.org/10.1038/sj.embor.embor743DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1315840PMC
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Physical mapping of the major histocompatibility complex class II and class III regions of the rat.

Immunogenetics 2002 Jul 14;54(4):268-75. Epub 2002 Jun 14.

Abteilung Immungenetik, Universität Göttingen, Heinrich-Düker-Weg 12, 37073 Göttingen, Germany.

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http://link.springer.com/10.1007/s00251-002-0460-x
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July 2002

Genetic analysis of the mouse brain proteome.

Nat Genet 2002 Apr 25;30(4):385-93. Epub 2002 Mar 25.

Institut für Humangenetik, Humboldt-Universität zu Berlin, Charité, Campus Virchow-Klinikum, Augustenburger Platz 1, D-13353 Berlin, Germany.

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April 2002