Publications by authors named "Hauke Smidt"

100Publications

Unravelling lactate-acetate and sugar conversion into butyrate by intestinal Anaerobutyricum and Anaerostipes species by comparative proteogenomics.

Environ Microbiol 2020 Oct 1. Epub 2020 Oct 1.

Laboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands.

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http://dx.doi.org/10.1111/1462-2920.15269DOI Listing
October 2020

Microbiome-based stratification to guide dietary interventions to improve human health.

Nutr Res 2020 Jul 21;82:1-10. Epub 2020 Jul 21.

Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.nutres.2020.07.004DOI Listing
July 2020

Congruence of Transcription Programs in Adult Stem Cell-Derived Jejunum Organoids and Original Tissue During Long-Term Culture.

Front Cell Dev Biol 2020 2;8:375. Epub 2020 Jul 2.

Host-Microbe Interactomics Group, Department of Animal Sciences, Wageningen University & Research, Wageningen, Netherlands.

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http://dx.doi.org/10.3389/fcell.2020.00375DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7343960PMC
July 2020

Metagenomic Analysis of Regularly Microwave-Treated and Untreated Domestic Kitchen Sponges.

Microorganisms 2020 May 14;8(5). Epub 2020 May 14.

Faculty of Medical and Life Sciences, Institute of Precision Medicine, Microbiology and Hygiene Group, Furtwangen University, 78054 Villingen-Schwenningen, Germany.

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http://dx.doi.org/10.3390/microorganisms8050736DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7284620PMC
May 2020

Dietary Isomalto/Malto-Polysaccharides Increase Fecal Bulk and Microbial Fermentation in Mice.

Mol Nutr Food Res 2020 06 13;64(12):e2000251. Epub 2020 May 13.

Department of Pediatrics, University of Groningen, University Medical Center Groningen, Groningen, 9713GZ, The Netherlands.

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http://dx.doi.org/10.1002/mnfr.202000251DOI Listing
June 2020

Long-Term β-galacto-oligosaccharides Supplementation Decreases the Development of Obesity and Insulin Resistance in Mice Fed a Western-Type Diet.

Mol Nutr Food Res 2020 06 25;64(12):e1900922. Epub 2020 May 25.

Department of Pediatrics , University of Groningen, University Medical Center Groningen, Groningen, 9713GZ, The Netherlands.

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http://dx.doi.org/10.1002/mnfr.201900922DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7379190PMC
June 2020

Cultivation of Bacteria From : Effects of Oxygen and Nutrient Gradients.

Front Microbiol 2020 19;11:175. Epub 2020 Feb 19.

Laboratory of Microbiology, Wageningen University & Research, Wageningen, Netherlands.

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http://dx.doi.org/10.3389/fmicb.2020.00175DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7042410PMC
February 2020

NG-Tax 2.0: A Semantic Framework for High-Throughput Amplicon Analysis.

Front Genet 2019 23;10:1366. Epub 2020 Jan 23.

Laboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen, Netherlands.

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http://dx.doi.org/10.3389/fgene.2019.01366DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6989550PMC
January 2020

Distal colonic transit is linked to gut microbiota diversity and microbial fermentation in humans with slow colonic transit.

Am J Physiol Gastrointest Liver Physiol 2020 02 23;318(2):G361-G369. Epub 2019 Dec 23.

Department of Human Biology, NUTRIM School of Nutrition and Translational Research in Metabolism, Maastricht University Medical Centre+, Maastricht, The Netherlands.

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http://dx.doi.org/10.1152/ajpgi.00283.2019DOI Listing
February 2020

Assessment of the Accuracy of High-Throughput Sequencing of the ITS1 Region of Neocallimastigomycota for Community Composition Analysis.

Front Microbiol 2019 18;10:2370. Epub 2019 Oct 18.

Laboratory of Microbiology, Wageningen University & Research, Wageningen, Netherlands.

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http://dx.doi.org/10.3389/fmicb.2019.02370DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6813465PMC
October 2019

Comparison of Different Invasive and Non-Invasive Methods to Characterize Intestinal Microbiota throughout a Production Cycle of Broiler Chickens.

Microorganisms 2019 Oct 10;7(10). Epub 2019 Oct 10.

Faculty of Veterinary Medicine, Department of Farm Animal Health, Utrecht University, 3584 CL Utrecht, The Netherlands.

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http://dx.doi.org/10.3390/microorganisms7100431DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6843853PMC
October 2019

Cultivation of Sponge-Associated Bacteria from and Collected from Different Depths.

Mar Drugs 2019 Oct 11;17(10). Epub 2019 Oct 11.

Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands.

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http://dx.doi.org/10.3390/md17100578DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6836257PMC
October 2019

Sugar Beet Pectin Supplementation Did Not Alter Profiles of Fecal Microbiota and Exhaled Breath in Healthy Young Adults and Healthy Elderly.

Nutrients 2019 Sep 12;11(9). Epub 2019 Sep 12.

Division Gastroenterology-Hepatology, Department of Internal Medicine, NUTRIM School of Nutrition and Translational Research in Metabolism, Maastricht University Medical Centre+, 6202 AZ Maastricht, The Netherlands.

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http://dx.doi.org/10.3390/nu11092193DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6770243PMC
September 2019

Diversity of tryptophan halogenases in sponges of the genus Aplysina.

FEMS Microbiol Ecol 2019 08;95(8)

Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands.

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https://academic.oup.com/femsec/article/doi/10.1093/femsec/f
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http://dx.doi.org/10.1093/femsec/fiz108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6644159PMC
August 2019

Reductive dechlorination of 1,2-dichloroethane in the presence of chloroethenes and 1,2-dichloropropane as co-contaminants.

Appl Microbiol Biotechnol 2019 Aug 28;103(16):6837-6849. Epub 2019 Jun 28.

Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands.

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http://dx.doi.org/10.1007/s00253-019-09985-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6667407PMC
August 2019

The dark side of technological advances in analysis of microbial ecosystems.

J Anim Sci Biotechnol 2019 17;10:49. Epub 2019 Jun 17.

2Laboratory of Microbiology, Wageningen University & Research, NL-6708 Wageningen, WE Netherlands.

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http://dx.doi.org/10.1186/s40104-019-0357-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6572749PMC
June 2019

Propionibacterium ruminifibrarum sp. nov., isolated from cow rumen fibrous content.

Int J Syst Evol Microbiol 2019 Aug 24;69(8):2584-2590. Epub 2019 Jun 24.

Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands.

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http://dx.doi.org/10.1099/ijsem.0.003544DOI Listing
August 2019

Differences in gut microbiota composition of laying hen lines divergently selected on feather pecking.

Poult Sci 2019 Dec;98(12):7009-7021

Adaptation Physiology Group, Department of Animal Sciences, Wageningen University & Research, 6708 WD Wageningen, the Netherlands.

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http://dx.doi.org/10.3382/ps/pez336DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6869756PMC
December 2019

Correlating Infant Faecal Microbiota Composition and Human Milk Oligosaccharide Consumption by Microbiota of One-Month Old Breastfed Infants.

Mol Nutr Food Res 2019 Apr 24:e1801214. Epub 2019 Apr 24.

K. Borewicz, H. Smidt, Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE, Wageningen, the Netherlands.

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http://dx.doi.org/10.1002/mnfr.201801214DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6618098PMC
April 2019

Reconstructing functional networks in the human intestinal tract using synthetic microbiomes.

Curr Opin Biotechnol 2019 08 6;58:146-154. Epub 2019 Apr 6.

Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands; Human Microbiome Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1016/j.copbio.2019.03.009DOI Listing
August 2019

Associated bacteria of (Chlorophyta).

PeerJ 2019 27;7:e6610. Epub 2019 Mar 27.

Bioprocess Engineering, Wageningen University & Research, Wageningen, The Netherlands.

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https://peerj.com/articles/6610
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http://dx.doi.org/10.7717/peerj.6610DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6441321PMC
March 2019

The Use of Defined Microbial Communities To Model Host-Microbe Interactions in the Human Gut.

Microbiol Mol Biol Rev 2019 05 13;83(2). Epub 2019 Mar 13.

Laboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands.

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http://mmbr.asm.org/lookup/doi/10.1128/MMBR.00054-18
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http://dx.doi.org/10.1128/MMBR.00054-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6684003PMC
May 2019

Toll-Like Receptor-Dependent Immunomodulatory Activity of Pycnogenol.

Nutrients 2019 Jan 22;11(2). Epub 2019 Jan 22.

Department of Cell Biology and Immunology, Wageningen University & Research, 6708 WD Wageningen, The Netherlands.

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http://dx.doi.org/10.3390/nu11020214DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6412808PMC
January 2019

Ethyl tert-butyl ether (EtBE) degradation by an algal-bacterial culture obtained from contaminated groundwater.

Water Res 2019 01 22;148:314-323. Epub 2018 Oct 22.

Deltares, Subsurface and Groundwater Systems, Daltonlaan 600, 3584 BK, Utrecht, the Netherlands.

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https://linkinghub.elsevier.com/retrieve/pii/S00431354183084
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http://dx.doi.org/10.1016/j.watres.2018.10.050DOI Listing
January 2019

Reclassification of Eubacterium hallii as Anaerobutyricum hallii gen. nov., comb. nov., and description of Anaerobutyricum soehngenii sp. nov., a butyrate and propionate-producing bacterium from infant faeces.

Int J Syst Evol Microbiol 2018 Dec 23;68(12):3741-3746. Epub 2018 Oct 23.

1​Laboratory of Microbiology, Wageningen University and Research, Stippeneng 4, Building 124, 6708 WE Wageningen, The Netherlands.

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http://dx.doi.org/10.1099/ijsem.0.003041DOI Listing
December 2018

Do apes smell like humans? The role of skin bacteria and volatiles of primates in mosquito host selection.

J Exp Biol 2018 11 16;221(Pt 22). Epub 2018 Nov 16.

Laboratory of Entomology, Wageningen University & Research, P.O. Box 16, 6700 AA Wageningen, The Netherlands.

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http://dx.doi.org/10.1242/jeb.185959DOI Listing
November 2018

Gut Microbiota and Body Weight in School-Aged Children: The KOALA Birth Cohort Study.

Obesity (Silver Spring) 2018 11 8;26(11):1767-1776. Epub 2018 Oct 8.

Department of Epidemiology, CAPHRI School for Public Health and Primary Care, Maastricht University, Maastricht, the Netherlands.

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http://doi.wiley.com/10.1002/oby.22320
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http://dx.doi.org/10.1002/oby.22320DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6646907PMC
November 2018

Romboutsia hominis sp. nov., the first human gut-derived representative of the genus Romboutsia, isolated from ileostoma effluent.

Int J Syst Evol Microbiol 2018 Nov 18;68(11):3479-3486. Epub 2018 Sep 18.

1​Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands.

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http://dx.doi.org/10.1099/ijsem.0.003012DOI Listing
November 2018

Age-dependent changes in GI physiology and microbiota: time to reconsider?

Gut 2018 12 7;67(12):2213-2222. Epub 2018 Sep 7.

Division Gastroenterology-Hepatology, NUTRIM School of Nutrition and Translational Research in Metabolism, Maastricht University Medical Center, Maastricht, The Netherlands.

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http://dx.doi.org/10.1136/gutjnl-2017-315542DOI Listing
December 2018

Short-Term Microbiota Manipulation and Forearm Substrate Metabolism in Obese Men: A Randomized, Double-Blind, Placebo-Controlled Trial.

Obes Facts 2018 9;11(4):318-326. Epub 2018 Aug 9.

Department of Human Biology, NUTRIM School of Nutrition and Translational Research in Metabolism, Maastricht University Medical Center+, Maastricht, The Netherlands.

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http://dx.doi.org/10.1159/000492114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6189533PMC
September 2019

Flux, Impact, and Fate of Halogenated Xenobiotic Compounds in the Gut.

Front Physiol 2018 10;9:888. Epub 2018 Jul 10.

Laboratory of Microbiology, Wageningen University and Research, Wageningen, Netherlands.

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http://dx.doi.org/10.3389/fphys.2018.00888DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6048469PMC
July 2018

The effect of the algal microbiome on industrial production of microalgae.

Microb Biotechnol 2018 09 5;11(5):806-818. Epub 2018 Jul 5.

Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands.

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http://doi.wiley.com/10.1111/1751-7915.13296
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http://dx.doi.org/10.1111/1751-7915.13296DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6116740PMC
September 2018

Fifty Percent Human - how art brings us in touch with our microbial cohabitants.

Microb Biotechnol 2018 07;11(4):571-574

Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands.

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http://dx.doi.org/10.1111/1751-7915.13285DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6011930PMC
July 2018

Metabolic flexibility of a prospective bioremediator: Desulfitobacterium hafniense Y51 challenged in chemostats.

Environ Microbiol 2018 07;20(7):2652-2669

Molecular Cell Physiology, Faculty of Science, VU University Amsterdam, De Boelelaan 1085, 1081, HV, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1111/1462-2920.14295DOI Listing
July 2018

Archaeal and bacterial diversity and community composition from 18 phylogenetically divergent sponge species in Vietnam.

PeerJ 2018 8;6:e4970. Epub 2018 Jun 8.

Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands.

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http://dx.doi.org/10.7717/peerj.4970DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5995103PMC
June 2018

Prospects for harnessing biocide resistance for bioremediation and detoxification.

Science 2018 05;360(6390):743-746

Wageningen University & Research, Laboratory of Microbiology, Stippeneng 4, 6708 WE Wageningen, Netherlands.

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http://dx.doi.org/10.1126/science.aar3778DOI Listing
May 2018

Correction to: Recovery of Previously Uncultured Bacterial Genera from Three Mediterranean Sponges.

Mar Biotechnol (NY) 2018 08;20(4):557

Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands.

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http://dx.doi.org/10.1007/s10126-018-9829-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6828311PMC
August 2018

In Vitro Fermentation Behavior of Isomalto/Malto-Polysaccharides Using Human Fecal Inoculum Indicates Prebiotic Potential.

Mol Nutr Food Res 2018 06 28;62(12):e1800232. Epub 2018 May 28.

Laboratory of Food Chemistry, Wageningen University & Research, P.O. Box 17, 6700 AA Wageningen, The Netherlands.

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http://dx.doi.org/10.1002/mnfr.201800232DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6033187PMC
June 2018

Lifelong calorie restriction affects indicators of colonic health in aging C57Bl/6J mice.

J Nutr Biochem 2018 06 20;56:152-164. Epub 2018 Mar 20.

Division of Human Nutrition, Wageningen University & Research, 6708 WE, Wageningen, the Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.jnutbio.2018.01.001DOI Listing
June 2018

Studying microbial functionality within the gut ecosystem by systems biology.

Genes Nutr 2018 6;13. Epub 2018 Mar 6.

1Laboratory of Systems and Synthetic Biology, Wageningen University and Research, Stippeneng 4, 6708 WE Wageningen, the Netherlands.

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http://dx.doi.org/10.1186/s12263-018-0594-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5840735PMC
March 2018

Host and Environmental Factors Affecting the Intestinal Microbiota in Chickens.

Front Microbiol 2018 16;9:235. Epub 2018 Feb 16.

Laboratory of Microbiology, Wageningen University & Research, Wageningen, Netherlands.

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http://dx.doi.org/10.3389/fmicb.2018.00235DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5820305PMC
February 2018

Anaerobic degradation of a mixture of MtBE, EtBE, TBA, and benzene under different redox conditions.

Appl Microbiol Biotechnol 2018 Apr 24;102(7):3387-3397. Epub 2018 Feb 24.

Deltares, Subsurface and Groundwater Systems, Daltonlaan 600, 3584 BK, Utrecht, the Netherlands.

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http://dx.doi.org/10.1007/s00253-018-8853-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5852185PMC
April 2018

Occupancy strongly influences faecal microbial composition of wild lemurs.

FEMS Microbiol Ecol 2018 03;94(3)

Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands.

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https://academic.oup.com/femsec/article/doi/10.1093/femsec/f
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http://dx.doi.org/10.1093/femsec/fiy017DOI Listing
March 2018

Organohalide respiration in pristine environments: implications for the natural halogen cycle.

Environ Microbiol 2018 03 15;20(3):934-948. Epub 2017 Dec 15.

Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, Wageningen 6708 WE, The Netherlands.

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http://doi.wiley.com/10.1111/1462-2920.14016
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http://dx.doi.org/10.1111/1462-2920.14016DOI Listing
March 2018

Coexistence of poribacterial phylotypes among geographically widespread and phylogenetically divergent sponge hosts.

Environ Microbiol Rep 2018 02 14;10(1):80-91. Epub 2017 Dec 14.

Laboratory of Microbiology, Wageningen University, Stippeneng 4, Wageningen, 6708 WE, The Netherlands.

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http://dx.doi.org/10.1111/1758-2229.12609DOI Listing
February 2018

Complete Genome Sequence of Strain L2-7.

Genome Announc 2017 Oct 26;5(43). Epub 2017 Oct 26.

Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands

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http://dx.doi.org/10.1128/genomeA.01167-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5658497PMC
October 2017

Comparative genomics of the genus Desulfitobacterium.

FEMS Microbiol Ecol 2017 12;93(12)

Laboratory of Microbiology, Wageningen University, Stippeneng 4, 6708 WE Wageningen, The Netherlands.

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http://dx.doi.org/10.1093/femsec/fix135DOI Listing
December 2017

Improvement of Insulin Sensitivity after Lean Donor Feces in Metabolic Syndrome Is Driven by Baseline Intestinal Microbiota Composition.

Cell Metab 2017 Oct;26(4):611-619.e6

Department of Vascular Medicine, Academic Medical Center, University of Amsterdam, 1105 AZ Amsterdam, the Netherlands; Top Institute of Food and Nutrition, 6700 AN Wageningen, the Netherlands; Department of Internal Medicine, VUMC, Free University, Amsterdam, the Netherlands; Wallenberg Laboratory, Sahlgrenska Hospital, University of Gothenburg, Gothenburg, Sweden. Electronic address:

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http://dx.doi.org/10.1016/j.cmet.2017.09.008DOI Listing
October 2017

Fungi found in Mediterranean and North Sea sponges: how specific are they?

PeerJ 2017 6;5:e3722. Epub 2017 Sep 6.

Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands.

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https://peerj.com/articles/3722
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http://dx.doi.org/10.7717/peerj.3722DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5591636PMC
September 2017

Recovery of Previously Uncultured Bacterial Genera from Three Mediterranean Sponges.

Mar Biotechnol (NY) 2017 Oct 10;19(5):454-468. Epub 2017 Jul 10.

Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands.

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http://dx.doi.org/10.1007/s10126-017-9766-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5599449PMC
October 2017

Endothelial dysfunction: what is the role of the microbiota?

Gut 2018 02 28;67(2):201-202. Epub 2017 Jun 28.

Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands.

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http://dx.doi.org/10.1136/gutjnl-2017-314012DOI Listing
February 2018

Different Types of Dietary Fibers Trigger Specific Alterations in Composition and Predicted Functions of Colonic Bacterial Communities in BALB/c Mice.

Front Microbiol 2017 30;8:966. Epub 2017 May 30.

Key Laboratory for Animal Disease-Resistance Nutrition of China, Ministry of Education, Animal Nutrition Institute, Sichuan Agricultural UniversityChengdu, China.

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http://dx.doi.org/10.3389/fmicb.2017.00966DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5447771PMC
May 2017

The multi-omics promise in context: from sequence to microbial isolate.

Crit Rev Microbiol 2018 Mar 31;44(2):212-229. Epub 2017 May 31.

a Laboratory of Microbiology , Wageningen University & Research , Wageningen , The Netherlands.

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https://www.tandfonline.com/doi/full/10.1080/1040841X.2017.1
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http://dx.doi.org/10.1080/1040841X.2017.1332003DOI Listing
March 2018

Systematics of haloarchaea and biotechnological potential of their hydrolytic enzymes.

Microbiology (Reading) 2017 05 26;163(5):623-645. Epub 2017 May 26.

Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Sevilla, Sevilla, Spain.

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http://dx.doi.org/10.1099/mic.0.000463DOI Listing
May 2017

Concurrent Haloalkanoate Degradation and Chlorate Reduction by Pseudomonas chloritidismutans AW-1.

Appl Environ Microbiol 2017 06 31;83(12). Epub 2017 May 31.

Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands

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http://dx.doi.org/10.1128/AEM.00325-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5452809PMC
June 2017

Supplementation of Diet With Galacto-oligosaccharides Increases Bifidobacteria, but Not Insulin Sensitivity, in Obese Prediabetic Individuals.

Gastroenterology 2017 07 8;153(1):87-97.e3. Epub 2017 Apr 8.

Top Institute Food and Nutrition, Wageningen, The Netherlands; Department of Human Biology, NUTRIM School of Nutrition and Translational Research in Metabolism, Maastricht University Medical Centre+, Maastricht, The Netherlands.

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http://dx.doi.org/10.1053/j.gastro.2017.03.051DOI Listing
July 2017

Intestinal microbiome landscaping: insight in community assemblage and implications for microbial modulation strategies.

FEMS Microbiol Rev 2017 03;41(2):182-199

Laboratory of Microbiology, Wageningen University, Stippeneng 4, Building 124, 6708 WE Wageningen, the Netherlands.

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http://dx.doi.org/10.1093/femsre/fuw045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5399919PMC
March 2017

Benzene degradation in a denitrifying biofilm reactor: activity and microbial community composition.

Appl Microbiol Biotechnol 2017 Jun 20;101(12):5175-5188. Epub 2017 Mar 20.

Deltares, Subsurface and Groundwater Systems, Princetonlaan 6, 3584 CB, Utrecht, The Netherlands.

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http://dx.doi.org/10.1007/s00253-017-8214-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5486827PMC
June 2017

β2→1-Fructans Modulate the Immune System in a Microbiota-Dependent and -Independent Fashion.

Front Immunol 2017 16;8:154. Epub 2017 Feb 16.

Top Institute Food and Nutrition, Wageningen, Netherlands; Department of Pathology and Medical Biology, University Medical Center Groningen, University of Groningen, Groningen, Netherlands.

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http://dx.doi.org/10.3389/fimmu.2017.00154DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5311052PMC
February 2017

Successive DNA extractions improve characterization of soil microbial communities.

PeerJ 2017 1;5:e2915. Epub 2017 Feb 1.

Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW) , Wageningen , Netherlands.

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http://dx.doi.org/10.7717/peerj.2915DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5291099PMC
February 2017

Dietary fibres modulate the composition and activity of butyrate-producing bacteria in the large intestine of suckling piglets.

Antonie Van Leeuwenhoek 2017 May 4;110(5):687-696. Epub 2017 Feb 4.

Jiangsu Key Laboratory of Gastrointestinal Nutrition and Animal Health, Laboratory of Gastrointestinal Microbiology, College of Animal Science and Technology, Nanjing Agricultural University, No. 6, Tongwei Road, Nanjing, 210095, Jiangsu, China.

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http://dx.doi.org/10.1007/s10482-017-0836-4DOI Listing
May 2017

Geochemical Parameters and Reductive Dechlorination Determine Aerobic Cometabolic vs Aerobic Metabolic Vinyl Chloride Biodegradation at Oxic/Anoxic Interface of Hyporheic Zones.

Environ Sci Technol 2017 02 11;51(3):1626-1634. Epub 2017 Jan 11.

KU Leuven , Division of Soil and Water Management, Kasteelpark Arenberg 20, B-3001 Heverlee, Belgium.

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http://dx.doi.org/10.1021/acs.est.6b05041DOI Listing
February 2017

Sponge Microbiota Are a Reservoir of Functional Antibiotic Resistance Genes.

Front Microbiol 2016 17;7:1848. Epub 2016 Nov 17.

Laboratory of Microbiology, Wageningen UniversityWageningen, Netherlands; National Institute for Public Health and the EnvironmentBilthoven, Netherlands.

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http://dx.doi.org/10.3389/fmicb.2016.01848DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5112248PMC
November 2016

Probiotic legacy effects on gut microbial assembly in tilapia larvae.

Sci Rep 2016 Sep 27;6:33965. Epub 2016 Sep 27.

Aquaculture and Fisheries Group, Wageningen University, De Elst 1, 6708 WD Wageningen, The Netherlands.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5037425PMC
http://dx.doi.org/10.1038/srep33965DOI Listing
September 2016