Hassan M Fathallah-Shaykh

Hassan M Fathallah-Shaykh

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Hassan M Fathallah-Shaykh

Hassan M Fathallah-Shaykh

Publications by authors named "Hassan M Fathallah-Shaykh"

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Inception Modules Enhance Brain Tumor Segmentation.

Front Comput Neurosci 2019 12;13:44. Epub 2019 Jul 12.

Departments of Neurology and Mathematics, University of Alabama at Birmingham, Birmingham, AL, United States.

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http://dx.doi.org/10.3389/fncom.2019.00044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6640210PMC
July 2019

Approximate kernel reconstruction for time-varying networks.

BioData Min 2019 6;12. Epub 2019 Feb 6.

4School of Medicine, University of Alabama at Birmingham, Birmingham, AL USA.

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http://dx.doi.org/10.1186/s13040-019-0192-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6364395PMC
February 2019

Single Cell Mathematical Model Successfully Replicates Key Features of GBM: Go-Or-Grow Is Not Necessary.

PLoS One 2017 3;12(1):e0169434. Epub 2017 Jan 3.

The University of Alabama, Birmingham, Department of Mathematics, Birmingham, Alabama, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0169434PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5207515PMC
August 2017

Key rates for the grades and transformation ability of glioma: model simulations and clinical cases.

J Neurooncol 2017 Jun 27;133(2):377-388. Epub 2017 Apr 27.

Department of Neurology, The University of Alabama, Birmingham, AL, USA.

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http://dx.doi.org/10.1007/s11060-017-2444-6DOI Listing
June 2017

Computational Trials: Unraveling Motility Phenotypes, Progression Patterns, and Treatment Options for Glioblastoma Multiforme.

PLoS One 2016 12;11(1):e0146617. Epub 2016 Jan 12.

The University of Alabama, Birmingham, Department of Biomedical Engineering, Birmingham, Alabama, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0146617PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4710507PMC
July 2016

Automated Robust Image Segmentation: Level Set Method Using Nonnegative Matrix Factorization with Application to Brain MRI.

Bull Math Biol 2016 07 14;78(7):1450-76. Epub 2016 Jul 14.

Departments of Neurology, Mathematics, Electrical, Biomedical, and Mechanical Engineering, University of Alabama at Birmingham, Birmingham, AL, 35294, USA.

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http://dx.doi.org/10.1007/s11538-016-0190-0DOI Listing
July 2016

Effects of anti-angiogenesis on glioblastoma growth and migration: model to clinical predictions.

PLoS One 2014 15;9(12):e115018. Epub 2014 Dec 15.

Department of Mathematics, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America; Department of Neurology, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0115018PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4266618PMC
May 2016

Phase I dose-escalation study of the PI3K/mTOR inhibitor voxtalisib (SAR245409, XL765) plus temozolomide with or without radiotherapy in patients with high-grade glioma.

Neuro Oncol 2015 Sep 26;17(9):1275-83. Epub 2015 May 26.

Center for Neuro-Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA (P.Y.W.); Memorial Sloan Kettering Cancer Center, New York, New York, USA (A.O.); Cleveland Clinic, Cleveland, Ohio, USA (M.S.A.); University of Alabama, Birmingham, Alabama, USA (H.M.F.-S.); University of Rochester Medical Center, Rochester, New York, USA (N.M.); Sanofi, Cambridge, Massachusetts, USA (J.J.L); Exelixis Inc., South San Francisco, California, USA (A.D.L.); Quintiles, Durham, North Carolina, USA (J.T.); Sanofi, Bridgewater, New Jersey, USA (J.J.); Sanofi, Vitry-sur-Seine, France (C.E.); University of California-Los Angeles, Los Angeles, California, USA (T.F.C.).

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http://dx.doi.org/10.1093/neuonc/nov083DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4588757PMC
September 2015

Case 212: chronic lymphocytic inflammation with pontine perivascular enhancement responsive to steroids.

Radiology 2014 Dec;273(3):940-7

From the Departments of Radiology (A.K.B., J.J.D., R.R.), Pathology (J.R.H.), and Neurology (H.M.F.) University of Alabama at Birmingham, JT-N432, 619 19th St S, Birmingham, AL-35249-6830.

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http://pubs.rsna.org/doi/10.1148/radiol.14131355
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http://dx.doi.org/10.1148/radiol.14131355DOI Listing
December 2014

A multilayer grow-or-go model for GBM: effects of invasive cells and anti-angiogenesis on growth.

Bull Math Biol 2014 Sep 23;76(9):2306-33. Epub 2014 Aug 23.

IMB, UMR 5251, University of Bordeaux, 33400, Talence, France,

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http://dx.doi.org/10.1007/s11538-014-0007-yDOI Listing
September 2014

The role of Src family kinases in growth and migration of glioma stem cells.

Int J Oncol 2014 Jul 9;45(1):302-10. Epub 2014 May 9.

Division of Neuro-Oncology, Department of Neurology, University of Alabama at Birmingham, Birmingham, AL 35294-3410, USA.

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http://dx.doi.org/10.3892/ijo.2014.2432DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4079155PMC
July 2014

c-Src and neural Wiskott-Aldrich syndrome protein (N-WASP) promote low oxygen-induced accelerated brain invasion by gliomas.

PLoS One 2013 19;8(9):e75436. Epub 2013 Sep 19.

Department of Neurology, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0075436PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3777891PMC
June 2014

Tracking of time-varying genomic regulatory networks with a LASSO-Kalman smoother.

EURASIP J Bioinform Syst Biol 2014 Feb 12;2014(1). Epub 2014 Feb 12.

Department of Electrical and Computer Engineering, Rowan University, 201 Mullica Hill Rd, Glassboro, NJ 08028, USA.

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http://dx.doi.org/10.1186/1687-4153-2014-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3974129PMC
February 2014

Primary central nervous system angiosarcoma: two case reports.

J Med Case Rep 2012 Aug 21;6:251. Epub 2012 Aug 21.

Division of Neuropathology, University of Alabama at Birmingham, PD6A 175, Birmingham, AL, 35294, USA.

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http://jmedicalcasereports.biomedcentral.com/articles/10.118
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http://dx.doi.org/10.1186/1752-1947-6-251DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3459733PMC
August 2012

Pontine ring-enhancing glioblastoma multiforme-like fungal abscess.

Arch Neurol 2011 Nov;68(11):1476-7

Department of Neurology, University of Alabama at Birmingham, Birmingham, AL, USA.

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http://dx.doi.org/10.1001/archneurol.2011.755DOI Listing
November 2011

Gene expression analysis in radiotherapy patients and C57BL/6 mice as a measure of exposure to ionizing radiation.

Radiat Res 2011 Jul 1;176(1):49-61. Epub 2011 Mar 1.

Department of Pharmacology and Toxicology, University of Alabama at Birmingham, AL 35294, USA.

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http://dx.doi.org/10.1667/RR2419.1DOI Listing
July 2011

Modeling of regulatory networks: theory and applications in the study of the Drosophila circadian clock.

Methods Enzymol 2011 ;487:39-71

Department of Mathematics, The University of Alabama at Birmingham, Birmingham, Alabama, USA.

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http://linkinghub.elsevier.com/retrieve/pii/B978012381270400
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http://dx.doi.org/10.1016/B978-0-12-381270-4.00002-0DOI Listing
April 2011

Dynamics of the Drosophila circadian clock: theoretical anti-jitter network and controlled chaos.

PLoS One 2010 Oct 13;5(10):e11207. Epub 2010 Oct 13.

Department of Neurology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0011207PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2954144PMC
October 2010

Apparent widening gap in access to neuro-oncologic care in the United States: need for action.

Arch Neurol 2010 Sep;67(9):1137-9

Departmentof Surgery, The University of Alabama, Birmingham, AL 35295, USA.

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http://archneur.jamanetwork.com/article.aspx?doi=10.1001/arc
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http://dx.doi.org/10.1001/archneurol.2010.217DOI Listing
September 2010

Rationally designed pharmacogenomic treatment using concurrent capecitabine and radiotherapy for glioblastoma; gene expression profiles associated with outcome.

Clin Cancer Res 2010 May 11;16(10):2890-8. Epub 2010 May 11.

Division of Clinical Pharmacology, Department of Pharmacology and Toxicology, Department of Radiation Oncology, Division of Neuropathology, Department of Pathology, Division of Preventive Medicine, Department of Medicine, and Division of Neuro-oncology, Department of Neurology, University of Alabama at Birmingham, Birmingham, Alabama.

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http://clincancerres.aacrjournals.org/cgi/doi/10.1158/1078-0
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http://dx.doi.org/10.1158/1078-0432.CCR-09-3151DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2871063PMC
May 2010

Malignant astrocytomas: a system disease.

Arch Neurol 2010 Mar;67(3):353-5

Department of Neurology, UAB Comprehensive Neuroscience Center, The University of Alabama at Birmingham, FOT 1020, 150 3rd Ave S, Birmingham, AL 35295-2410, USA.

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http://archneur.jamanetwork.com/article.aspx?doi=10.1001/arc
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http://dx.doi.org/10.1001/archneurol.2010.19DOI Listing
March 2010

Bevacizumab is active as a single agent against recurrent malignant gliomas.

Anticancer Res 2010 Feb;30(2):609-11

The University of Alabama at Birmingham, Department of Neurology, Birmingham, AL, USA.

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February 2010

Mathematical model of the Drosophila circadian clock: loop regulation and transcriptional integration.

Biophys J 2009 Nov;97(9):2399-408

The University of Alabama at Birmingham, Department of Neurology, The UAB Comprehensive Neuroscience Center, Birmingham, Alabama, USA.

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http://dx.doi.org/10.1016/j.bpj.2009.08.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2770617PMC
November 2009

Noise and rank-dependent geometrical filter improves sensitivity of highly specific discovery by microarrays.

Bioinformatics 2005 Dec 22;21(23):4255-62. Epub 2005 Sep 22.

Department of Neurological Sciences, Section of Neuro-Oncology, Rush University Medical Center 1725 West Harrison Street, Chicago, IL 60612, USA.

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http://dx.doi.org/10.1093/bioinformatics/bti684DOI Listing
December 2005

Logical networks inferred from highly specific discovery of transcriptionally regulated genes predict protein states in cultured gliomas.

Biochem Biophys Res Commun 2005 Nov;336(4):1278-84

Department of Neurological Sciences, Section of Neuro-Oncology, Rush University Medical Center, Chicago, IL 60612, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S0006291X0501987
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http://dx.doi.org/10.1016/j.bbrc.2005.08.254DOI Listing
November 2005

Microarrays: applications and pitfalls.

Arch Neurol 2005 Nov;62(11):1669-72

Department of Neurological Sciences, Section of Neuro-oncology, Rush University Medical Center, Chicago, Ill 60612, USA.

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http://archneur.jamanetwork.com/article.aspx?doi=10.1001/arc
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http://dx.doi.org/10.1001/archneur.62.11.1669DOI Listing
November 2005

Genomic discovery reveals a molecular system for resistance to oxidative and endoplasmic reticulum stress in cultured glioma.

Arch Neurol 2005 Feb;62(2):233-6

Department of Neurological Sciences, Section of Neuro-Oncology, Rush University Medical Center, Chicago, IL 60612, USA.

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http://dx.doi.org/10.1001/archneur.62.2.233DOI Listing
February 2005

Mathematical algorithm for discovering states of expression from direct genetic comparison by microarrays.

Nucleic Acids Res 2004 20;32(13):3807-14. Epub 2004 Jul 20.

Department of Neurological Sciences, Section of Neuro-Oncology, Rush University Medical Center, 1725 West Harrison Street, Chicago, IL 60612, USA.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkh718DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC506804PMC
July 2004

Genomic expression discovery predicts pathways and opposing functions behind phenotypes.

J Biol Chem 2003 Jun 16;278(26):23830-3. Epub 2003 Apr 16.

Department of Neurological Sciences and Neurosurgery, Rush Presbyterian-S. Luke's Medical Center, Chicago, Illinois 60612, USA.

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http://dx.doi.org/10.1074/jbc.M302800200DOI Listing
June 2003

Mathematical modeling of noise and discovery of genetic expression classes in gliomas.

Oncogene 2002 Oct;21(47):7164-74

Department of Neurological Sciences, Rush Presbyterian-St. Lukes Medical Center, Chicago, Illinois, IL 60612, USA.

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http://dx.doi.org/10.1038/sj.onc.1205654DOI Listing
October 2002

Darts in the dark cure animal, but not human, brain tumors.

Arch Neurol 2002 May;59(5):721-4

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http://dx.doi.org/10.1001/archneur.59.5.721DOI Listing
May 2002