Publications by authors named "HarshaVardhan Doddapaneni"

53Publications

Genomic Profiling of Childhood Tumor Patient-Derived Xenograft Models to Enable Rational Clinical Trial Design.

Cell Rep 2019 11;29(6):1675-1689.e9

Division of Oncology, Children's Hospital of Philadelphia, and Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104-4318, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2019.09.071DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6880934PMC
November 2019

Erratum to: The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species.

Genome Biol 2017 01 18;18(1):11. Epub 2017 Jan 18.

USDA-ARS, Center for Medical, Agricultural and Veterinary Entomology, 1700 S.W. 23rd Drive, Gainesville, FL, 32608, USA.

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http://dx.doi.org/10.1186/s13059-017-1155-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5241912PMC
January 2017

Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface.

Genome Biol 2016 11 11;17(1):227. Epub 2016 Nov 11.

Human Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s13059-016-1088-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5105290PMC
November 2016

The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species.

Genome Biol 2016 09 22;17(1):192. Epub 2016 Sep 22.

USDA-ARS, Center for Medical, Agricultural, and Veterinary Entomology, 1700 S.W. 23rd Drive, Gainesville, FL, 32608, USA.

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http://dx.doi.org/10.1186/s13059-016-1049-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5034548PMC
September 2016

Unique features of a global human ectoparasite identified through sequencing of the bed bug genome.

Nat Commun 2016 Feb 2;7:10165. Epub 2016 Feb 2.

Human Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1038/ncomms10165DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4740739PMC
February 2016

BCOR-CCNB3 fusions are frequent in undifferentiated sarcomas of male children.

Mod Pathol 2015 Apr 31;28(4):575-86. Epub 2014 Oct 31.

1] Department of Pathology, Texas Children's Hospital, Houston, TX, USA [2] Department of Pathology & Immunology, Baylor College of Medicine, Houston, TX, USA [3] Department of Pediatrics, Baylor College of Medicine, Houston, TX, USA [4] Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, TX, USA.

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http://dx.doi.org/10.1038/modpathol.2014.139DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4385430PMC
April 2015

Mutually exclusive recurrent somatic mutations in MAP2K1 and BRAF support a central role for ERK activation in LCH pathogenesis.

Blood 2014 Nov 8;124(19):3007-15. Epub 2014 Sep 8.

Texas Children's Cancer Center, Texas Children's Hospital, Houston, TX; Department of Molecular and Human Genetics, Human Genome Sequencing Center, Division of Pediatric Hematology-Oncology, Department of Pediatrics, Program in Translational Biology and Molecular Medicine, and.

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http://dx.doi.org/10.1182/blood-2014-05-577825DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4224195PMC
November 2014

Novel somatic and germline mutations in intracranial germ cell tumours.

Nature 2014 Jul 4;511(7508):241-5. Epub 2014 Jun 4.

1] Texas Children's Cancer and Hematology Centers, Baylor College of Medicine, Houston, Texas 77030, USA [2] Medical Scientist Training Program, Baylor College of Medicine, Houston, Texas 77030, USA [3] Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1038/nature13296DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4532372PMC
July 2014

A comparative genomic analysis of the oxidative enzymes potentially involved in lignin degradation by Agaricus bisporus.

Fungal Genet Biol 2013 Jun 10;55:22-31. Epub 2013 Apr 10.

Carver Center for Genomics, Department of Biology, University of Iowa, Iowa City, IA 52242, USA.

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http://dx.doi.org/10.1016/j.fgb.2013.03.004DOI Listing
June 2013

Characterization of transcriptomes from sexual and asexual lineages of a New Zealand snail (Potamopyrgus antipodarum).

Mol Ecol Resour 2013 Mar 27;13(2):289-94. Epub 2012 Dec 27.

Department of Biology, University of Iowa, Iowa City, IA 52242, USA.

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http://doi.wiley.com/10.1111/1755-0998.12051
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http://dx.doi.org/10.1111/1755-0998.12051DOI Listing
March 2013

Identification of a single-stranded DNA virus associated with citrus chlorotic dwarf disease, a new member in the family Geminiviridae.

Virology 2012 Oct 1;432(1):162-72. Epub 2012 Jul 1.

Dipartimento di Biologia e Chimica Agroforestale ed Ambientale, Università di Bari Aldo Moro, Via Amendola 165/A, 70126 Bari, Italy.

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https://linkinghub.elsevier.com/retrieve/pii/S00426822120030
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http://dx.doi.org/10.1016/j.virol.2012.06.005DOI Listing
October 2012

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis.

Proc Natl Acad Sci U S A 2012 Apr 20;109(14):5458-63. Epub 2012 Mar 20.

Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Cientificas, E-28040 Madrid, Spain.

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http://www.treesearch.fs.fed.us/pubs/download/41647.pdf
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http://www.pnas.org/cgi/doi/10.1073/pnas.1119912109
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http://dx.doi.org/10.1073/pnas.1119912109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3325662PMC
April 2012

The complete genome sequence of 'Candidatus Liberibacter solanacearum', the bacterium associated with potato zebra chip disease.

PLoS One 2011 Apr 28;6(4):e19135. Epub 2011 Apr 28.

United States Department of Agriculture-Agricultural Research Service, CDPG, San Joaquin Valley Agricultural Sciences Center, Parlier, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0019135PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3084294PMC
April 2011

Genome-to-function characterization of novel fungal P450 monooxygenases oxidizing polycyclic aromatic hydrocarbons (PAHs).

Biochem Biophys Res Commun 2010 Sep 30;399(4):492-7. Epub 2010 Jul 30.

Environmental Genetics and Molecular Toxicology Division, Department of Environmental Health, University of Cincinnati College of Medicine, Cincinnati, OH 45267-0056, USA.

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http://dx.doi.org/10.1016/j.bbrc.2010.07.094DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2943217PMC
September 2010

A new diagnostic system for ultra-sensitive and specific detection and quantification of Candidatus Liberibacter asiaticus, the bacterium associated with citrus Huanglongbing.

J Microbiol Methods 2010 Apr 22;81(1):17-25. Epub 2010 Jan 22.

Crop Diseases, Pests and Genetics Research Unit, San Joaquin Valley Agricultural Science Center, USDA ARS PWA, Parlier, CA 93648, USA.

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http://dx.doi.org/10.1016/j.mimet.2010.01.014DOI Listing
April 2010

VitisExpDB: a database resource for grape functional genomics.

BMC Plant Biol 2008 Feb 28;8:23. Epub 2008 Feb 28.

USDA-ARS, San Joaquin Valley Agricultural Science Center, 9611 So. Riverbend Ave, Parlier, CA 93648, USA.

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http://dx.doi.org/10.1186/1471-2229-8-23DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2359749PMC
February 2008

Acquisition of uncharacterized sequences from Candidatus liberibacter, an unculturable bacterium, using an improved genomic walking method.

Mol Cell Probes 2008 Feb 1;22(1):30-7. Epub 2007 Jul 1.

USDA-ARS, San Joaquin Valley Agricultural Science Center, Parlier, CA 93648, USA.

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http://dx.doi.org/10.1016/j.mcp.2007.06.006DOI Listing
February 2008

nWayComp: a genome-wide sequence comparison tool for multiple strains/species of phylogenetically related microorganisms.

In Silico Biol 2007 ;7(2):195-200

Citrus Research Board, 323 W. Oak, P.O. Box 230, Visalia, CA 93279, USA.

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January 2008

Comparative analysis of ESTs involved in grape responses to Xylella fastidiosa infection.

BMC Plant Biol 2007 Feb 22;7. Epub 2007 Feb 22.

USDA-ARS, 9611 S, Riverbend Avenue, Parlier, California 93648, USA.

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http://dx.doi.org/10.1186/1471-2229-7-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1821027PMC
February 2007

Expression of a beta-glucosidase gene results in increased accumulation of salicylic acid in transgenic Nicotiana tabacum cv. Xanthi-nc NN genotype.

Plant Cell Rep 2007 Mar 3;26(3):291-301. Epub 2006 Nov 3.

Department of Biological Sciences, Western Michigan University, Kalamazoo, MI 49008, USA.

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http://dx.doi.org/10.1007/s00299-006-0212-8DOI Listing
March 2007

Physiological regulation, xenobiotic induction, and heterologous expression of P450 monooxygenase gene pc-3 (CYP63A3), a new member of the CYP63 gene cluster in the white-rot fungus Phanerochaete chrysosporium.

Curr Microbiol 2005 Jun 13;50(6):292-8. Epub 2005 Jun 13.

Environmental Genetics and Molecular Toxicology Division, Department of Environmental Health, University of Cincinnati, College of Medicine, Cincinnati, Ohio, 45267-0056, USA.

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http://link.springer.com/10.1007/s00284-005-4480-2
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http://dx.doi.org/10.1007/s00284-005-4480-2DOI Listing
June 2005

Genome-wide structural and evolutionary analysis of the P450 monooxygenase genes (P450ome) in the white rot fungus Phanerochaete chrysosporium: evidence for gene duplications and extensive gene clustering.

BMC Genomics 2005 Jun 14;6:92. Epub 2005 Jun 14.

Environmental Genetics and Molecular Toxicology Division, Department of Environmental Health, University of Cincinnati College of Medicine, Cincinnati, OH 45267-0056, USA.

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http://dx.doi.org/10.1186/1471-2164-6-92DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1184071PMC
June 2005

Differential regulation and xenobiotic induction of tandem P450 monooxygenase genes pc-1 (CYP63A1) and pc-2 (CYP63A2) in the white-rot fungus Phanerochaete chrysosporium.

Appl Microbiol Biotechnol 2004 Oct 23;65(5):559-65. Epub 2004 Jul 23.

Molecular Toxicology Division, Department of Environmental Health, University of Cincinnati, College of Medicine, OH 45267-0056, USA.

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http://link.springer.com/10.1007/s00253-004-1645-z
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http://dx.doi.org/10.1007/s00253-004-1645-zDOI Listing
October 2004