Publications by authors named "Harsha Doddapaneni"

36Publications

Correction to: Genome-enabled insights into the biology of thrips as crop pests.

Authors:
Dorith Rotenberg Aaron A Baumann Sulley Ben-Mahmoud Olivier Christiaens Wannes Dermauw Panagiotis Ioannidis Chris G C Jacobs Iris M Vargas Jentzsch Jonathan E Oliver Monica F Poelchau Swapna Priya Rajarapu Derek J Schneweis Simon Snoeck Clauvis N T Taning Dong Wei Shirani M K Widana Gamage Daniel S T Hughes Shwetha C Murali Samuel T Bailey Nicolas E Bejerman Christopher J Holmes Emily C Jennings Andrew J Rosendale Andrew Rosselot Kaylee Hervey Brandi A Schneweis Sammy Cheng Christopher Childers Felipe A Simão Ralf G Dietzgen Hsu Chao Huyen Dinh Harsha Vardhan Doddapaneni Shannon Dugan Yi Han Sandra L Lee Donna M Muzny Jiaxin Qu Kim C Worley Joshua B Benoit Markus Friedrich Jeffery W Jones Kristen A Panfilio Yoonseong Park Hugh M Robertson Guy Smagghe Diane E Ullman Maurijn van der Zee Thomas Van Leeuwen Jan A Veenstra Robert M Waterhouse Matthew T Weirauch John H Werren Anna E Whitfield Evgeny M Zdobnov Richard A Gibbs Stephen Richards

BMC Biol 2020 Nov 16;18(1):169. Epub 2020 Nov 16.

Human Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s12915-020-00915-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7670811PMC
November 2020

Genome-enabled insights into the biology of thrips as crop pests.

Authors:
Dorith Rotenberg Aaron A Baumann Sulley Ben-Mahmoud Olivier Christiaens Wannes Dermauw Panagiotis Ioannidis Chris G C Jacobs Iris M Vargas Jentzsch Jonathan E Oliver Monica F Poelchau Swapna Priya Rajarapu Derek J Schneweis Simon Snoeck Clauvis N T Taning Dong Wei Shirani M K Widana Gamage Daniel S T Hughes Shwetha C Murali Samuel T Bailey Nicolas E Bejerman Christopher J Holmes Emily C Jennings Andrew J Rosendale Andrew Rosselot Kaylee Hervey Brandi A Schneweis Sammy Cheng Christopher Childers Felipe A Simão Ralf G Dietzgen Hsu Chao Huyen Dinh Harsha Vardhan Doddapaneni Shannon Dugan Yi Han Sandra L Lee Donna M Muzny Jiaxin Qu Kim C Worley Joshua B Benoit Markus Friedrich Jeffery W Jones Kristen A Panfilio Yoonseong Park Hugh M Robertson Guy Smagghe Diane E Ullman Maurijn van der Zee Thomas Van Leeuwen Jan A Veenstra Robert M Waterhouse Matthew T Weirauch John H Werren Anna E Whitfield Evgeny M Zdobnov Richard A Gibbs Stephen Richards

BMC Biol 2020 Oct 19;18(1):142. Epub 2020 Oct 19.

Human Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s12915-020-00862-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7570057PMC
October 2020

Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals.

Authors:
Harsha Doddapaneni Sara Javornik Cregeen Richard Sucgang Qingchang Meng Xiang Qin Vasanthi Avadhanula Hsu Chao Vipin Menon Erin Nicholson David Henke Felipe-Andres Piedra Anubama Rajan Zeineen Momin Kavya Kottapalli Kristi L Hoffman Fritz J Sedlazeck Ginger Metcalf Pedro A Piedra Donna M Muzny Joseph F Petrosino Richard A Gibbs

bioRxiv 2020 Jul 27. Epub 2020 Jul 27.

Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA, 77030.

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http://dx.doi.org/10.1101/2020.07.27.223495DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7402036PMC
July 2020

Next Generation Sequencing of 134 Children with Autism Spectrum Disorder and Regression.

Authors:
Jiani Yin Chun-An Chun Nikolay N Zavadenko Natalia L Pechatnikova Oxana Yu Naumova Harsha V Doddapaneni Jianhong Hu Donna M Muzny Christian P Schaaf Elena L Grigorenko

Genes (Basel) 2020 Jul 25;11(8). Epub 2020 Jul 25.

Molecular and Human Genetics Department, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.3390/genes11080853DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7463850PMC
July 2020

Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera.

Authors:
Jan Philip Oeyen Patrice Baa-Puyoulet Joshua B Benoit Leo W Beukeboom Erich Bornberg-Bauer Anja Buttstedt Federica Calevro Elizabeth I Cash Hsu Chao Hubert Charles Mei-Ju May Chen Christopher Childers Andrew G Cridge Peter Dearden Huyen Dinh Harsha Vardhan Doddapaneni Amanda Dolan Alexander Donath Daniel Dowling Shannon Dugan Elizabeth Duncan Elena N Elpidina Markus Friedrich Elzemiek Geuverink Joshua D Gibson Sonja Grath Cornelis J P Grimmelikhuijzen Ewald Große-Wilde Cameron Gudobba Yi Han Bill S Hansson Frank Hauser Daniel S T Hughes Panagiotis Ioannidis Emmanuelle Jacquin-Joly Emily C Jennings Jeffery W Jones Steffen Klasberg Sandra L Lee Peter Lesný Mackenzie Lovegrove Sebastian Martin Alexander G Martynov Christoph Mayer Nicolas Montagné Victoria C Moris Monica Munoz-Torres Shwetha Canchi Murali Donna M Muzny Brenda Oppert Nicolas Parisot Thomas Pauli Ralph S Peters Malte Petersen Christian Pick Emma Persyn Lars Podsiadlowski Monica F Poelchau Panagiotis Provataris Jiaxin Qu Maarten J M F Reijnders Björn Marcus von Reumont Andrew J Rosendale Felipe A Simao John Skelly Alexandros G Sotiropoulos Aaron L Stahl Megumi Sumitani Elise M Szuter Olivia Tidswell Evangelos Tsitlakidis Lucia Vedder Robert M Waterhouse John H Werren Jeanne Wilbrandt Kim C Worley Daisuke S Yamamoto Louis van de Zande Evgeny M Zdobnov Tanja Ziesmann Richard A Gibbs Stephen Richards Masatsugu Hatakeyama Bernhard Misof Oliver Niehuis

Genome Biol Evol 2020 Jul;12(7):1099-1188

Department of Evolutionary Biology and Ecology, Institute of Biology I (Zoology), Albert Ludwig University Freiburg, Germany.

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http://dx.doi.org/10.1093/gbe/evaa106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7455281PMC
July 2020

Wolff-Parkinson-White syndrome: De novo variants and evidence for mutational burden in genes associated with atrial fibrillation.

Authors:
Zeynep H Coban-Akdemir Wu-Lin Charng Mahshid Azamian Ingrid S Paine Jaya Punetha Christopher M Grochowski Tomasz Gambin Santiago O Valdes Bryan Cannon Gladys Zapata Patricia P Hernandez Shalini Jhangiani Harsha Doddapaneni Jianhong Hu Fatima Boricha Donna M Muzny Eric Boerwinkle Yaping Yang Richard A Gibbs Jennifer E Posey Xander H T Wehrens John W Belmont Jeffrey J Kim Christina Y Miyake James R Lupski Seema R Lalani

Am J Med Genet A 2020 06 31;182(6):1387-1399. Epub 2020 Mar 31.

Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.

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http://dx.doi.org/10.1002/ajmg.a.61571DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7275694PMC
June 2020

Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest.

Authors:
Michael E Sparks Raman Bansal Joshua B Benoit Michael B Blackburn Hsu Chao Mengyao Chen Sammy Cheng Christopher Childers Huyen Dinh Harsha Vardhan Doddapaneni Shannon Dugan Elena N Elpidina David W Farrow Markus Friedrich Richard A Gibbs Brantley Hall Yi Han Richard W Hardy Christopher J Holmes Daniel S T Hughes Panagiotis Ioannidis Alys M Cheatle Jarvela J Spencer Johnston Jeffery W Jones Brent A Kronmiller Faith Kung Sandra L Lee Alexander G Martynov Patrick Masterson Florian Maumus Monica Munoz-Torres Shwetha C Murali Terence D Murphy Donna M Muzny David R Nelson Brenda Oppert Kristen A Panfilio Débora Pires Paula Leslie Pick Monica F Poelchau Jiaxin Qu Katie Reding Joshua H Rhoades Adelaide Rhodes Stephen Richards Rose Richter Hugh M Robertson Andrew J Rosendale Zhijian Jake Tu Arun S Velamuri Robert M Waterhouse Matthew T Weirauch Jackson T Wells John H Werren Kim C Worley Evgeny M Zdobnov Dawn E Gundersen-Rindal

BMC Genomics 2020 Mar 14;21(1):227. Epub 2020 Mar 14.

USDA-ARS Invasive Insect Biocontrol and Behavior Laboratory, Beltsville, MD, 20705, USA.

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http://dx.doi.org/10.1186/s12864-020-6510-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7071726PMC
March 2020

Gene content evolution in the arthropods.

Authors:
Gregg W C Thomas Elias Dohmen Daniel S T Hughes Shwetha C Murali Monica Poelchau Karl Glastad Clare A Anstead Nadia A Ayoub Phillip Batterham Michelle Bellair Greta J Binford Hsu Chao Yolanda H Chen Christopher Childers Huyen Dinh Harsha Vardhan Doddapaneni Jian J Duan Shannon Dugan Lauren A Esposito Markus Friedrich Jessica Garb Robin B Gasser Michael A D Goodisman Dawn E Gundersen-Rindal Yi Han Alfred M Handler Masatsugu Hatakeyama Lars Hering Wayne B Hunter Panagiotis Ioannidis Joy C Jayaseelan Divya Kalra Abderrahman Khila Pasi K Korhonen Carol Eunmi Lee Sandra L Lee Yiyuan Li Amelia R I Lindsey Georg Mayer Alistair P McGregor Duane D McKenna Bernhard Misof Mala Munidasa Monica Munoz-Torres Donna M Muzny Oliver Niehuis Nkechinyere Osuji-Lacy Subba R Palli Kristen A Panfilio Matthias Pechmann Trent Perry Ralph S Peters Helen C Poynton Nikola-Michael Prpic Jiaxin Qu Dorith Rotenberg Coby Schal Sean D Schoville Erin D Scully Evette Skinner Daniel B Sloan Richard Stouthamer Michael R Strand Nikolaus U Szucsich Asela Wijeratne Neil D Young Eduardo E Zattara Joshua B Benoit Evgeny M Zdobnov Michael E Pfrender Kevin J Hackett John H Werren Kim C Worley Richard A Gibbs Ariel D Chipman Robert M Waterhouse Erich Bornberg-Bauer Matthew W Hahn Stephen Richards

Genome Biol 2020 01 23;21(1):15. Epub 2020 Jan 23.

Human Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s13059-019-1925-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6977273PMC
January 2020

Allelic Heterogeneity at the CRP Locus Identified by Whole-Genome Sequencing in Multi-ancestry Cohorts.

Authors:
Laura M Raffield Apoorva K Iyengar Biqi Wang Sheila M Gaynor Cassandra N Spracklen Xue Zhong Madeline H Kowalski Shabnam Salimi Linda M Polfus Emelia J Benjamin Joshua C Bis Russell Bowler Brian E Cade Won Jung Choi Alejandro P Comellas Adolfo Correa Pedro Cruz Harsha Doddapaneni Peter Durda Stephanie M Gogarten Deepti Jain Ryan W Kim Brian G Kral Leslie A Lange Martin G Larson Cecelia Laurie Jiwon Lee Seonwook Lee Joshua P Lewis Ginger A Metcalf Braxton D Mitchell Zeineen Momin Donna M Muzny Nathan Pankratz Cheol Joo Park Stephen S Rich Jerome I Rotter Kathleen Ryan Daekwan Seo Russell P Tracy Karine A Viaud-Martinez Lisa R Yanek Lue Ping Zhao Xihong Lin Bingshan Li Yun Li Josée Dupuis Alexander P Reiner Karen L Mohlke Paul L Auer

Am J Hum Genet 2020 01 26;106(1):112-120. Epub 2019 Dec 26.

Joseph J. Zilber School of Public Health, University of Wisconsin Milwaukee, Milwaukee, WI 53205, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2019.12.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7042494PMC
January 2020

The Genomics of Arthrogryposis, a Complex Trait: Candidate Genes and Further Evidence for Oligogenic Inheritance.

Authors:
Davut Pehlivan Yavuz Bayram Nilay Gunes Zeynep Coban Akdemir Anju Shukla Tatjana Bierhals Burcu Tabakci Yavuz Sahin Alper Gezdirici Jawid M Fatih Elif Yilmaz Gulec Gozde Yesil Jaya Punetha Zeynep Ocak Christopher M Grochowski Ender Karaca Hatice Mutlu Albayrak Periyasamy Radhakrishnan Haktan Bagis Erdem Ibrahim Sahin Timur Yildirim Ilhan A Bayhan Aysegul Bursali Muhsin Elmas Zafer Yuksel Ozturk Ozdemir Fatma Silan Onur Yildiz Osman Yesilbas Sedat Isikay Burhan Balta Shen Gu Shalini N Jhangiani Harsha Doddapaneni Jianhong Hu Donna M Muzny Eric Boerwinkle Richard A Gibbs Konstantinos Tsiakas Maja Hempel Katta Mohan Girisha Davut Gul Jennifer E Posey Nursel H Elcioglu Beyhan Tuysuz James R Lupski

Am J Hum Genet 2019 07 20;105(1):132-150. Epub 2019 Jun 20.

Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA; Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2019.05.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6612529PMC
July 2019

Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome.

Authors:
Kristen A Panfilio Iris M Vargas Jentzsch Joshua B Benoit Deniz Erezyilmaz Yuichiro Suzuki Stefano Colella Hugh M Robertson Monica F Poelchau Robert M Waterhouse Panagiotis Ioannidis Matthew T Weirauch Daniel S T Hughes Shwetha C Murali John H Werren Chris G C Jacobs Elizabeth J Duncan David Armisén Barbara M I Vreede Patrice Baa-Puyoulet Chloé S Berger Chun-Che Chang Hsu Chao Mei-Ju M Chen Yen-Ta Chen Christopher P Childers Ariel D Chipman Andrew G Cridge Antonin J J Crumière Peter K Dearden Elise M Didion Huyen Dinh Harsha Vardhan Doddapaneni Amanda Dolan Shannon Dugan Cassandra G Extavour Gérard Febvay Markus Friedrich Neta Ginzburg Yi Han Peter Heger Christopher J Holmes Thorsten Horn Yi-Min Hsiao Emily C Jennings J Spencer Johnston Tamsin E Jones Jeffery W Jones Abderrahman Khila Stefan Koelzer Viera Kovacova Megan Leask Sandra L Lee Chien-Yueh Lee Mackenzie R Lovegrove Hsiao-Ling Lu Yong Lu Patricia J Moore Monica C Munoz-Torres Donna M Muzny Subba R Palli Nicolas Parisot Leslie Pick Megan L Porter Jiaxin Qu Peter N Refki Rose Richter Rolando Rivera-Pomar Andrew J Rosendale Siegfried Roth Lena Sachs M Emília Santos Jan Seibert Essia Sghaier Jayendra N Shukla Richard J Stancliffe Olivia Tidswell Lucila Traverso Maurijn van der Zee Séverine Viala Kim C Worley Evgeny M Zdobnov Richard A Gibbs Stephen Richards

Genome Biol 2019 04 2;20(1):64. Epub 2019 Apr 2.

Human Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s13059-019-1660-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6444547PMC
April 2019

Megabase Length Hypermutation Accompanies Human Structural Variation at 17p11.2.

Authors:
Christine R Beck Claudia M B Carvalho Zeynep C Akdemir Fritz J Sedlazeck Xiaofei Song Qingchang Meng Jianhong Hu Harsha Doddapaneni Zechen Chong Edward S Chen Philip C Thornton Pengfei Liu Bo Yuan Marjorie Withers Shalini N Jhangiani Divya Kalra Kimberly Walker Adam C English Yi Han Ken Chen Donna M Muzny Grzegorz Ira Chad A Shaw Richard A Gibbs P J Hastings James R Lupski

Cell 2019 03 28;176(6):1310-1324.e10. Epub 2019 Feb 28.

Department of Molecular and Human Genetics, BCM, Houston, TX 77030, USA; Human Genome Sequencing Center, BCM, Houston, TX 77030, USA; Department of Pediatrics, BCM, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA; Dan L. Duncan Comprehensive Cancer Center, BCM, Houston, TX 77030, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2019.01.045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6438178PMC
March 2019

Bi-allelic Variants in TONSL Cause SPONASTRIME Dysplasia and a Spectrum of Skeletal Dysplasia Phenotypes.

Authors:
Lindsay C Burrage John J Reynolds Nissan Vida Baratang Jennifer B Phillips Jeremy Wegner Ashley McFarquhar Martin R Higgs Audrey E Christiansen Denise G Lanza John R Seavitt Mahim Jain Xiaohui Li David A Parry Vandana Raman David Chitayat Ivan K Chinn Alison A Bertuch Lefkothea Karaviti Alan E Schlesinger Dawn Earl Michael Bamshad Ravi Savarirayan Harsha Doddapaneni Donna Muzny Shalini N Jhangiani Christine M Eng Richard A Gibbs Weimin Bi Lisa Emrick Jill A Rosenfeld John Postlethwait Monte Westerfield Mary E Dickinson Arthur L Beaudet Emmanuelle Ranza Celine Huber Valérie Cormier-Daire Wei Shen Rong Mao Jason D Heaney Jordan S Orange Débora Bertola Guilherme L Yamamoto Wagner A R Baratela Merlin G Butler Asim Ali Mehdi Adeli Daniel H Cohn Deborah Krakow Andrew P Jackson Melissa Lees Amaka C Offiah Colleen M Carlston John C Carey Grant S Stewart Carlos A Bacino Philippe M Campeau Brendan Lee

Am J Hum Genet 2019 03 14;104(3):422-438. Epub 2019 Feb 14.

Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2019.01.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6408318PMC
March 2019

The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water.

Authors:
David Armisén Rajendhran Rajakumar Markus Friedrich Joshua B Benoit Hugh M Robertson Kristen A Panfilio Seung-Joon Ahn Monica F Poelchau Hsu Chao Huyen Dinh Harsha Vardhan Doddapaneni Shannon Dugan Richard A Gibbs Daniel S T Hughes Yi Han Sandra L Lee Shwetha C Murali Donna M Muzny Jiaxin Qu Kim C Worley Monica Munoz-Torres Ehab Abouheif François Bonneton Travis Chen Li-Mei Chiang Christopher P Childers Andrew G Cridge Antonin J J Crumière Amelie Decaras Elise M Didion Elizabeth J Duncan Elena N Elpidina Marie-Julie Favé Cédric Finet Chris G C Jacobs Alys M Cheatle Jarvela Emily C Jennings Jeffery W Jones Maryna P Lesoway Mackenzie R Lovegrove Alexander Martynov Brenda Oppert Angelica Lillico-Ouachour Arjuna Rajakumar Peter Nagui Refki Andrew J Rosendale Maria Emilia Santos William Toubiana Maurijn van der Zee Iris M Vargas Jentzsch Aidamalia Vargas Lowman Severine Viala Stephen Richards Abderrahman Khila

BMC Genomics 2018 Nov 21;19(1):832. Epub 2018 Nov 21.

Institut de Génomique Fonctionnelle de Lyon, Université de Lyon, Université Claude Bernard Lyon 1, CNRS UMR 5242, Ecole Normale Supérieure de Lyon 46, allée d'Italie, 69364, Lyon Cedex 07, France.

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http://dx.doi.org/10.1186/s12864-018-5163-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6249893PMC
November 2018

Reproductive Longevity Predicts Mutation Rates in Primates.

Authors:
Gregg W C Thomas Richard J Wang Arthi Puri R Alan Harris Muthuswamy Raveendran Daniel S T Hughes Shwetha C Murali Lawrence E Williams Harsha Doddapaneni Donna M Muzny Richard A Gibbs Christian R Abee Mary R Galinski Kim C Worley Jeffrey Rogers Predrag Radivojac Matthew W Hahn

Curr Biol 2018 10 27;28(19):3193-3197.e5. Epub 2018 Sep 27.

Department of Biology, Indiana University, 107 S. Indiana Avenue, Bloomington, IN 47405, USA; Department of Computer Science, Indiana University, 107 S. Indiana Avenue, Bloomington, IN 47405, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S09609822183113
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http://dx.doi.org/10.1016/j.cub.2018.08.050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6177314PMC
October 2018

Elucidating the molecular pathogenesis of glioma: integrated germline and somatic profiling of a familial glioma case series.

Authors:
Daniel I Jacobs Kazutaka Fukumura Matthew N Bainbridge Georgina N Armstrong Spiridon Tsavachidis Xiangjun Gu Harsha V Doddapaneni Jianhong Hu Joy C Jayaseelan Donna M Muzny Jason T Huse Melissa L Bondy

Neuro Oncol 2018 11;20(12):1625-1633

Department of Medicine, Section of Epidemiology and Population Sciences, Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, Texas.

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http://dx.doi.org/10.1093/neuonc/noy119DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6231201PMC
November 2018

Mismatch repair gene mutations lead to lynch syndrome colorectal cancer in rhesus macaques.

Authors:
Beth K Dray Muthuswamy Raveendran R Alan Harris Fernando Benavides Stanton B Gray Carlos J Perez Mark J McArthur Lawrence E Williams Wallace B Baze Harsha Doddapaneni Donna M Muzny Christian R Abee Jeffrey Rogers

Genes Cancer 2018 Mar;9(3-4):142-152

Human Genome Sequencing Center and Dept. of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.

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http://www.impactjournals.com/genesandcancer/index.php?pii=1
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http://dx.doi.org/10.18632/genesandcancer.170DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6086002PMC
March 2018

National Cancer Institute Biospecimen Evidence-Based Practices: Harmonizing Procedures for Nucleic Acid Extraction from Formalin-Fixed, Paraffin-Embedded Tissue.

Authors:
Sarah R Greytak Kelly B Engel Erik Zmuda Esmeralda Casas-Silva Ping Guan Katherine A Hoadley Andrew J Mungall David A Wheeler Harsha V Doddapaneni Helen M Moore

Biopreserv Biobank 2018 Aug 19;16(4):247-250. Epub 2018 Jun 19.

4 Biorepositories and Biospecimen Research Branch, Cancer Diagnosis Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute , Bethesda, Maryland.

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http://dx.doi.org/10.1089/bio.2018.0046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6080192PMC
August 2018

Comparative genomics of the miniature wasp and pest control agent Trichogramma pretiosum.

Authors:
Amelia R I Lindsey Yogeshwar D Kelkar Xin Wu Dan Sun Ellen O Martinson Zhichao Yan Paul F Rugman-Jones Daniel S T Hughes Shwetha C Murali Jiaxin Qu Shannon Dugan Sandra L Lee Hsu Chao Huyen Dinh Yi Han Harsha Vardhan Doddapaneni Kim C Worley Donna M Muzny Gongyin Ye Richard A Gibbs Stephen Richards Soojin V Yi Richard Stouthamer John H Werren

BMC Biol 2018 05 18;16(1):54. Epub 2018 May 18.

Department of Biology, University of Rochester, Rochester, New York, 14627, USA.

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http://dx.doi.org/10.1186/s12915-018-0520-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5960102PMC
May 2018

A biallelic ANTXR1 variant expands the anthrax toxin receptor associated phenotype to tooth agenesis.

Authors:
Nuriye Dinckan Renqian Du Zeynep C Akdemir Yavuz Bayram Shalini N Jhangiani Harsha Doddapaneni Jianhong Hu Donna M Muzny Yeliz Guven Oya Aktoren Hulya Kayserili Eric Boerwinkle Richard A Gibbs Jennifer E Posey James R Lupski Zehra O Uyguner Ariadne Letra

Am J Med Genet A 2018 04 13;176(4):1015-1022. Epub 2018 Feb 13.

Center for Craniofacial Research, University of Texas Health Science Center at Houston School of Dentistry, Houston, Texas.

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http://dx.doi.org/10.1002/ajmg.a.38625DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5933053PMC
April 2018

Lessons learned from additional research analyses of unsolved clinical exome cases.

Authors:
Mohammad K Eldomery Zeynep Coban-Akdemir Tamar Harel Jill A Rosenfeld Tomasz Gambin Asbjørg Stray-Pedersen Sébastien Küry Sandra Mercier Davor Lessel Jonas Denecke Wojciech Wiszniewski Samantha Penney Pengfei Liu Weimin Bi Seema R Lalani Christian P Schaaf Michael F Wangler Carlos A Bacino Richard Alan Lewis Lorraine Potocki Brett H Graham John W Belmont Fernando Scaglia Jordan S Orange Shalini N Jhangiani Theodore Chiang Harsha Doddapaneni Jianhong Hu Donna M Muzny Fan Xia Arthur L Beaudet Eric Boerwinkle Christine M Eng Sharon E Plon V Reid Sutton Richard A Gibbs Jennifer E Posey Yaping Yang James R Lupski

Genome Med 2017 03 21;9(1):26. Epub 2017 Mar 21.

Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s13073-017-0412-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5361813PMC
March 2017

Non-malignant respiratory epithelial cells preferentially proliferate from resected non-small cell lung cancer specimens cultured under conditionally reprogrammed conditions.

Authors:
Boning Gao Chunxian Huang Kemp Kernstine Vasiliki Pelekanou Yuval Kluger Tingting Jiang Jennifer R Peters-Hall Melissa Coquelin Luc Girard Wei Zhang Kenneth Huffman Dwight Oliver Fumi Kinose Eric Haura Jamie K Teer Uwe Rix Anh T Le Dara L Aisner Marileila Varella-Garcia Robert C Doebele Kyle R Covington Oliver A Hampton Harsha V Doddapaneni Joy C Jayaseelan Jianhong Hu David A Wheeler Jerry W Shay David L Rimm Adi Gazdar John D Minna

Oncotarget 2017 Feb;8(7):11114-11126

Hamon Center for Therapeutic Oncology Research, University of Texas Southwestern Medical Center, Dallas, Texas, USA.

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http://dx.doi.org/10.18632/oncotarget.14366DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5355251PMC
February 2017

Postmortem genetic screening for the identification, verification, and reporting of genetic variants contributing to the sudden death of the young.

Authors:
D Nicole R Methner Steven E Scherer Katherine Welch Magdalena Walkiewicz Christine M Eng John W Belmont Mark C Powell Viktoriya Korchina Harsha Vardhan Doddapaneni Donna M Muzny Richard A Gibbs Dwayne A Wolf Luis A Sanchez Roger Kahn

Genome Res 2016 09 19;26(9):1170-7. Epub 2016 Jul 19.

Harris County Institute of Forensic Sciences, Houston, Texas 77054, USA;

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http://dx.doi.org/10.1101/gr.195800.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5052040PMC
September 2016

Exome sequencing in mostly consanguineous Arab families with neurologic disease provides a high potential molecular diagnosis rate.

Authors:
Wu-Lin Charng Ender Karaca Zeynep Coban Akdemir Tomasz Gambin Mehmed M Atik Shen Gu Jennifer E Posey Shalini N Jhangiani Donna M Muzny Harsha Doddapaneni Jianhong Hu Eric Boerwinkle Richard A Gibbs Jill A Rosenfeld Hong Cui Fan Xia Kandamurugu Manickam Yaping Yang Eissa A Faqeih Ali Al Asmari Mohammed A M Saleh Ayman W El-Hattab James R Lupski

BMC Med Genomics 2016 07 19;9(1):42. Epub 2016 Jul 19.

Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s12920-016-0208-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4950750PMC
July 2016

Novel patient-derived xenograft and cell line models for therapeutic testing of pediatric liver cancer.

Authors:
Beatrice Bissig-Choisat Claudia Kettlun-Leyton Xavier D Legras Barry Zorman Mercedes Barzi Leon L Chen Mansi D Amin Yung-Hsin Huang Robia G Pautler Oliver A Hampton Masand M Prakash Diane Yang Malgorzata Borowiak Donna Muzny Harsha Vardhan Doddapaneni Jianhong Hu Yan Shi M Waleed Gaber M John Hicks Patrick A Thompson Yiling Lu Gordon B Mills Milton Finegold John A Goss D Williams Parsons Sanjeev A Vasudevan Pavel Sumazin Dolores López-Terrada Karl-Dimiter Bissig

J Hepatol 2016 08 23;65(2):325-33. Epub 2016 Apr 23.

Center for Cell and Gene Therapy, Stem Cells and Regenerative Medicine Center, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA; Program in Developmental Biology, Baylor College of Medicine, Houston, TX, USA; Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, TX, USA; Graduate Program Department of Molecular & Cellular Biology, Baylor College of Medicine, Houston, TX, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jhep.2016.04.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5668139PMC
August 2016

An open access pilot freely sharing cancer genomic data from participants in Texas.

Authors:
Lauren B Becnel Stacey Pereira Jennifer A Drummond Marie-Claude Gingras Kyle R Covington Christie L Kovar Harsha Vardhan Doddapaneni Jianhong Hu Donna Muzny Amy L McGuire David A Wheeler Richard A Gibbs

Sci Data 2016 Feb 16;3:160010. Epub 2016 Feb 16.

Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1038/sdata.2016.10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4755126PMC
February 2016

Ampullary Cancers Harbor ELF3 Tumor Suppressor Gene Mutations and Exhibit Frequent WNT Dysregulation.

Authors:
Marie-Claude Gingras Kyle R Covington David K Chang Lawrence A Donehower Anthony J Gill Michael M Ittmann Chad J Creighton Amber L Johns Eve Shinbrot Ninad Dewal William E Fisher Christian Pilarsky Robert Grützmann Michael J Overman Nigel B Jamieson George Van Buren Jennifer Drummond Kimberly Walker Oliver A Hampton Liu Xi Donna M Muzny Harsha Doddapaneni Sandra L Lee Michelle Bellair Jianhong Hu Yi Han Huyen H Dinh Mike Dahdouli Jaswinder S Samra Peter Bailey Nicola Waddell John V Pearson Ivon Harliwong Huamin Wang Daniela Aust Karin A Oien Ralph H Hruban Sally E Hodges Amy McElhany Charupong Saengboonmee Fraser R Duthie Sean M Grimmond Andrew V Biankin David A Wheeler Richard A Gibbs

Cell Rep 2016 Feb 21;14(4):907-919. Epub 2016 Jan 21.

Department of Molecular and Human Genetics, Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.1016/j.celrep.2015.12.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4982376PMC
February 2016

Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma.

Authors:
W Marston Linehan Paul T Spellman Christopher J Ricketts Chad J Creighton Suzanne S Fei Caleb Davis David A Wheeler Bradley A Murray Laura Schmidt Cathy D Vocke Myron Peto Abu Amar M Al Mamun Eve Shinbrot Anurag Sethi Samira Brooks W Kimryn Rathmell Angela N Brooks Katherine A Hoadley A Gordon Robertson Denise Brooks Reanne Bowlby Sara Sadeghi Hui Shen Daniel J Weisenberger Moiz Bootwalla Stephen B Baylin Peter W Laird Andrew D Cherniack Gordon Saksena Scott Haake Jun Li Han Liang Yiling Lu Gordon B Mills Rehan Akbani Mark D M Leiserson Benjamin J Raphael Pavana Anur Donald Bottaro Laurence Albiges Nandita Barnabas Toni K Choueiri Bogdan Czerniak Andrew K Godwin A Ari Hakimi Thai H Ho James Hsieh Michael Ittmann William Y Kim Bhavani Krishnan Maria J Merino Kenna R Mills Shaw Victor E Reuter Ed Reznik Carl S Shelley Brian Shuch Sabina Signoretti Ramaprasad Srinivasan Pheroze Tamboli George Thomas Satish Tickoo Kenneth Burnett Daniel Crain Johanna Gardner Kevin Lau David Mallery Scott Morris Joseph D Paulauskis Robert J Penny Candace Shelton W Troy Shelton Mark Sherman Eric Thompson Peggy Yena Melissa T Avedon Jay Bowen Julie M Gastier-Foster Mark Gerken Kristen M Leraas Tara M Lichtenberg Nilsa C Ramirez Tracie Santos Lisa Wise Erik Zmuda John A Demchok Ina Felau Carolyn M Hutter Margi Sheth Heidi J Sofia Roy Tarnuzzer Zhining Wang Liming Yang Jean C Zenklusen Jiashan Zhang Brenda Ayala Julien Baboud Sudha Chudamani Jia Liu Laxmi Lolla Rashi Naresh Todd Pihl Qiang Sun Yunhu Wan Ye Wu Adrian Ally Miruna Balasundaram Saianand Balu Rameen Beroukhim Tom Bodenheimer Christian Buhay Yaron S N Butterfield Rebecca Carlsen Scott L Carter Hsu Chao Eric Chuah Amanda Clarke Kyle R Covington Mahmoud Dahdouli Ninad Dewal Noreen Dhalla Harsha V Doddapaneni Jennifer A Drummond Stacey B Gabriel Richard A Gibbs Ranabir Guin Walker Hale Alicia Hawes D Neil Hayes Robert A Holt Alan P Hoyle Stuart R Jefferys Steven J M Jones Corbin D Jones Divya Kalra Christie Kovar Lora Lewis Jie Li Yussanne Ma Marco A Marra Michael Mayo Shaowu Meng Matthew Meyerson Piotr A Mieczkowski Richard A Moore Donna Morton Lisle E Mose Andrew J Mungall Donna Muzny Joel S Parker Charles M Perou Jeffrey Roach Jacqueline E Schein Steven E Schumacher Yan Shi Janae V Simons Payal Sipahimalani Tara Skelly Matthew G Soloway Carrie Sougnez Angela Tam Donghui Tan Nina Thiessen Umadevi Veluvolu Min Wang Matthew D Wilkerson Tina Wong Junyuan Wu Liu Xi Jane Zhou Jason Bedford Fengju Chen Yao Fu Mark Gerstein David Haussler Katayoon Kasaian Phillip Lai Shiyun Ling Amie Radenbaugh David Van Den Berg John N Weinstein Jingchun Zhu Monique Albert Iakovina Alexopoulou Jeremiah J Andersen J Todd Auman John Bartlett Sheldon Bastacky Julie Bergsten Michael L Blute Lori Boice Roni J Bollag Jeff Boyd Erik Castle Ying-Bei Chen John C Cheville Erin Curley Benjamin Davies April DeVolk Rajiv Dhir Laura Dike John Eckman Jay Engel Jodi Harr Ronald Hrebinko Mei Huang Lori Huelsenbeck-Dill Mary Iacocca Bruce Jacobs Michael Lobis Jodi K Maranchie Scott McMeekin Jerome Myers Joel Nelson Jeremy Parfitt Anil Parwani Nicholas Petrelli Brenda Rabeno Somak Roy Andrew L Salner Joel Slaton Melissa Stanton R Houston Thompson Leigh Thorne Kelinda Tucker Paul M Weinberger Cynthia Winemiller Leigh Anne Zach Rosemary Zuna

N Engl J Med 2016 Jan 4;374(2):135-45. Epub 2015 Nov 4.

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http://www.nejm.org/doi/abs/10.1056/NEJMoa1505917
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http://dx.doi.org/10.1056/NEJMoa1505917DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4775252PMC
January 2016

Structure and function of the healthy pre-adolescent pediatric gut microbiome.

Authors:
Emily B Hollister Kevin Riehle Ruth Ann Luna Erica M Weidler Michelle Rubio-Gonzales Toni-Ann Mistretta Sabeen Raza Harsha V Doddapaneni Ginger A Metcalf Donna M Muzny Richard A Gibbs Joseph F Petrosino Robert J Shulman James Versalovic

Microbiome 2015 Aug 26;3:36. Epub 2015 Aug 26.

Department of Pathology & Immunology, Baylor College of Medicine, Houston, TX, USA.

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http://dx.doi.org/10.1186/s40168-015-0101-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4550057PMC
August 2015

Lucilia cuprina genome unlocks parasitic fly biology to underpin future interventions.

Authors:
Clare A Anstead Pasi K Korhonen Neil D Young Ross S Hall Aaron R Jex Shwetha C Murali Daniel S T Hughes Siu F Lee Trent Perry Andreas J Stroehlein Brendan R E Ansell Bert Breugelmans Andreas Hofmann Jiaxin Qu Shannon Dugan Sandra L Lee Hsu Chao Huyen Dinh Yi Han Harsha V Doddapaneni Kim C Worley Donna M Muzny Panagiotis Ioannidis Robert M Waterhouse Evgeny M Zdobnov Peter J James Neil H Bagnall Andrew C Kotze Richard A Gibbs Stephen Richards Philip Batterham Robin B Gasser

Nat Commun 2015 Jun 25;6:7344. Epub 2015 Jun 25.

Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria 3010, Australia.

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http://dx.doi.org/10.1038/ncomms8344DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4491171PMC
June 2015

PacBio-LITS: a large-insert targeted sequencing method for characterization of human disease-associated chromosomal structural variations.

Authors:
Min Wang Christine R Beck Adam C English Qingchang Meng Christian Buhay Yi Han Harsha V Doddapaneni Fuli Yu Eric Boerwinkle James R Lupski Donna M Muzny Richard A Gibbs

BMC Genomics 2015 Mar 19;16:214. Epub 2015 Mar 19.

Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s12864-015-1370-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4376517PMC
March 2015

Improved Real-Time PCR Diagnosis of Citrus Stubborn Disease by Targeting Prophage Genes of Spiroplasma citri.

Authors:
Xuefeng Wang Harsha Doddapaneni Jianchi Chen Raymond K Yokomi

Plant Dis 2015 Jan;99(1):149-154

United States Department of Agriculture-Agricultural Research Service (USDA-ARS), San Joaquin Valley Agricultural Sciences Center, Parlier, CA 93648-9757.

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http://apsjournals.apsnet.org/doi/10.1094/PDIS-06-14-0572-RE
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http://dx.doi.org/10.1094/PDIS-06-14-0572-REDOI Listing
January 2015

Germline mutations in shelterin complex genes are associated with familial glioma.

Authors:
Matthew N Bainbridge Georgina N Armstrong M Monica Gramatges Alison A Bertuch Shalini N Jhangiani Harsha Doddapaneni Lora Lewis Joseph Tombrello Spyros Tsavachidis Yanhong Liu Ali Jalali Sharon E Plon Ching C Lau Donald W Parsons Elizabeth B Claus Jill Barnholtz-Sloan Dora Il'yasova Joellen Schildkraut Francis Ali-Osman Siegal Sadetzki Christoffer Johansen Richard S Houlston Robert B Jenkins Daniel Lachance Sara H Olson Jonine L Bernstein Ryan T Merrell Margaret R Wrensch Kyle M Walsh Faith G Davis Rose Lai Sanjay Shete Kenneth Aldape Christopher I Amos Patricia A Thompson Donna M Muzny Richard A Gibbs Beatrice S Melin Melissa L Bondy

J Natl Cancer Inst 2015 Jan 7;107(1):384. Epub 2014 Dec 7.

Affiliations of authors: Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX (MNB, SNJ, HD, LL, JT, DMM, RAG); Codified Genomics, LLC, Houston, TX (MNB); Department of Pediatrics, Division of Hematology-Oncology, Dan L. Duncan Cancer Center (GNA, MMG, AAB, ST, YL, SEP, CCL, DWP, MLB) and Department of Neurosurgery (AJ), Baylor College of Medicine, Houston, TX; Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, CT (EBC); Department of Neurosurgery, Brigham and Women's Hospital, Boston, MA (EBC); Case Comprehensive Cancer Center, Case Western Reserve University School of Medicine, Cleveland, OH (JBS); Department of Epidemiology and Biostatistics, Georgia State University School of Public Health, Atlanta, GA (DI); Cancer Control and Prevention Program, Department of Community and Family Medicine, Duke University Medical Center, Durham, NC (DI, JS); Department of Surgery, Duke University Medical Center, Durham, North Carolina (FAO); Cancer and Radiation Epidemiology Unit, Gertner Institute, Chaim Sheba Medical Center, Tel Hashomer (SS); Sackler School of Medicine, Tel-Aviv University, Tel-Aviv, Israel (SiS); Institute of Cancer Epidemiology, Danish Cancer Society, Copenhagen, Denmark (CJ); Section of Cancer Genetics, Institute of Cancer Research, Sutton, Surrey, UK (RSH); Mayo Clinic Comprehensive Cancer Center, Mayo Clinic, Rochester, MN (RBJ, DL); Department of Epidemiology and Biostatistics, Memorial Sloan-Kettering Cancer Center, New York, NY (SHO, JLB); Department of Neurology, NorthShore University HealthSystem, Evanston, IL (RTM); Department of Neurological Surgery, University of California, San Francisco, San Francisco, CA (MRW, KMW); Department of Public Health Services, University of Alberta, Edmonton, Alberta, Canada (FGD); Departments of Neurology, Neurosurgery, and Preventive Medicine, University of Southern California Keck School of Medicine, Los Angeles, CA (RL); Department of Biostatistics (Sa

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http://dx.doi.org/10.1093/jnci/dju384DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4296199PMC
January 2015

Trans-ancestry mutational landscape of hepatocellular carcinoma genomes.

Authors:
Yasushi Totoki Kenji Tatsuno Kyle R Covington Hiroki Ueda Chad J Creighton Mamoru Kato Shingo Tsuji Lawrence A Donehower Betty L Slagle Hiromi Nakamura Shogo Yamamoto Eve Shinbrot Natsuko Hama Megan Lehmkuhl Fumie Hosoda Yasuhito Arai Kim Walker Mahmoud Dahdouli Kengo Gotoh Genta Nagae Marie-Claude Gingras Donna M Muzny Hidenori Ojima Kazuaki Shimada Yutaka Midorikawa John A Goss Ronald Cotton Akimasa Hayashi Junji Shibahara Shumpei Ishikawa Jacfranz Guiteau Mariko Tanaka Tomoko Urushidate Shoko Ohashi Naoko Okada Harsha Doddapaneni Min Wang Yiming Zhu Huyen Dinh Takuji Okusaka Norihiro Kokudo Tomoo Kosuge Tadatoshi Takayama Masashi Fukayama Richard A Gibbs David A Wheeler Hiroyuki Aburatani Tatsuhiro Shibata

Nat Genet 2014 Dec 2;46(12):1267-73. Epub 2014 Nov 2.

1] Division of Cancer Genomics, National Cancer Center Research Institute, Tokyo, Japan. [2] Laboratory of Molecular Medicine, Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo, Japan.

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http://dx.doi.org/10.1038/ng.3126DOI Listing
December 2014

Draft genome sequences and description of Lactobacillus rhamnosus strains L31, L34, and L35.

Authors:
Prapaporn Boonma Jennifer K Spinler Xiang Qin Chutima Jittaprasatsin Donna M Muzny Harsha Doddapaneni Richard Gibbs Joe Petrosino Somying Tumwasorn James Versalovic

Stand Genomic Sci 2014 Jun 15;9(3):744-54. Epub 2014 Feb 15.

Texas Children's Microbiome Center, Department of Pathology, Texas Children's Hospital, Houston, Texas, USA ; Department of Pathology & Immunology, Baylor College of Medicine, Houston, Texas, USA ; Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, Texas, USA.

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http://dx.doi.org/10.4056/sigs.5048907DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148986PMC
June 2014

OikoBase: a genomics and developmental transcriptomics resource for the urochordate Oikopleura dioica.

Authors:
Gemma Danks Coen Campsteijn Mrutyunjaya Parida Stephen Butcher Harsha Doddapaneni Bolei Fu Raul Petrin Raghu Metpally Boris Lenhard Patrick Wincker Daniel Chourrout Eric M Thompson J Robert Manak

Nucleic Acids Res 2013 Jan 26;41(Database issue):D845-53. Epub 2012 Nov 26.

Computational Biology Unit, University of Bergen, Bergen, N-5008, Norway.

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http://dx.doi.org/10.1093/nar/gks1159DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531137PMC
January 2013