Harris A Lewin

Harris A Lewin

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Harris A Lewin

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Precision nomenclature for the new genomics.

Gigascience 2019 08;8(8)

Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg 194044, Russia.

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http://dx.doi.org/10.1093/gigascience/giz086DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6705538PMC
August 2019

A near-chromosome-scale genome assembly of the gemsbok (Oryx gazella): an iconic antelope of the Kalahari desert.

Gigascience 2019 02 1;8(2). Epub 2019 Feb 1.

The UC Davis Genome Center, Department of Evolution and Ecology, College of Biological Sciences, and the Department of Reproduction and Population Health, School of Veterinary Medicine, University of California, Davis, USA.

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http://dx.doi.org/10.1093/gigascience/giy162DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6351727PMC
February 2019

Chromosome Segregation Is Biased by Kinetochore Size.

Curr Biol 2018 05 26;28(9):1344-1356.e5. Epub 2018 Apr 26.

Chromosome Instability & Dynamics Laboratory, Instituto de Biologia Molecular e Celular, Universidade do Porto, Rua Alfredo Allen 208, 4200-135 Porto, Portugal; Instituto de Investigação e Inovação em Saúde (i3S), Universidade do Porto, Rua Alfredo Allen 208, 4200-135 Porto, Portugal; Cell Division Group, Experimental Biology Unit, Department of Biomedicine, Faculdade de Medicina, Universidade do Porto, Alameda Professor Hernâni Monteiro, 4200-319 Porto, Portugal. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2018.03.023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5954971PMC
May 2018

Reconstruction and evolutionary history of eutherian chromosomes.

Proc Natl Acad Sci U S A 2017 07 19;114(27):E5379-E5388. Epub 2017 Jun 19.

Department of Evolution and Ecology, University of California, Davis, CA 95616

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http://dx.doi.org/10.1073/pnas.1702012114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5502614PMC
July 2017

Identification of a nonsense mutation in APAF1 that is likely causal for a decrease in reproductive efficiency in Holstein dairy cattle.

J Dairy Sci 2016 Aug 8;99(8):6693-6701. Epub 2016 Jun 8.

Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana 61801; Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana 61801; Department of Evolution and Ecology and the UC Davis Genome Center, University of California, Davis, Davis 95616. Electronic address:

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http://dx.doi.org/10.3168/jds.2015-10517DOI Listing
August 2016

Memories of Carl from an improbable friend.

Authors:
Harris A Lewin

RNA Biol 2014 14;11(3):273-8. Epub 2014 Apr 14.

University of California at Davis; Department of Evolution and Ecology and the UC Davis Genome Center; Davis, CA USA.

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http://dx.doi.org/10.4161/rna.28866DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4008559PMC
March 2015

Systems biology analysis of Brucella infected Peyer's patch reveals rapid invasion with modest transient perturbations of the host transcriptome.

PLoS One 2013 9;8(12):e81719. Epub 2013 Dec 9.

Department of Veterinary Pathobiology, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0081719PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3857238PMC
September 2014

Postpartal subclinical endometritis alters transcriptome profiles in liver and adipose tissue of dairy cows.

Bioinform Biol Insights 2014 19;8:45-63. Epub 2014 Feb 19.

Department of Animal Sciences, University of Illinois, Urbana, Illinois, USA. ; Division of Nutritional Sciences, University of Illinois, Urbana, Illinois, USA.

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http://dx.doi.org/10.4137/BBI.S13735DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3934763PMC
February 2014

Inferring demography from runs of homozygosity in whole-genome sequence, with correction for sequence errors.

Mol Biol Evol 2013 Sep 10;30(9):2209-23. Epub 2013 Jul 10.

Department of Agriculture and Food Systems, Melbourne School of Land and Environment, University of Melbourne, Victoria, Australia.

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http://dx.doi.org/10.1093/molbev/mst125DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3748359PMC
September 2013

Bioinformatics analysis of transcriptome dynamics during growth in angus cattle longissimus muscle.

Bioinform Biol Insights 2013 4;7:253-70. Epub 2013 Aug 4.

Mammalian NutriPhysioGenomics, Department of Animal Sciences, University of Illinois, Urbana, Illinois, USA. ; Division of Nutritional Sciences, University of Illinois, Urbana, Illinois USA.

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http://dx.doi.org/10.4137/BBI.S12328DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3738383PMC
August 2013

The future of livestock breeding: genomic selection for efficiency, reduced emissions intensity, and adaptation.

Trends Genet 2013 Apr 19;29(4):206-14. Epub 2012 Dec 19.

Biosciences Research Division, Department of Primary Industries, Bundoora, VIC 3083, Australia.

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http://dx.doi.org/10.1016/j.tig.2012.11.009DOI Listing
April 2013

Reference-assisted chromosome assembly.

Proc Natl Acad Sci U S A 2013 Jan 10;110(5):1785-90. Epub 2013 Jan 10.

Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.

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http://dx.doi.org/10.1073/pnas.1220349110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3562798PMC
January 2013

Analyses of pig genomes provide insight into porcine demography and evolution.

Authors:
Martien A M Groenen Alan L Archibald Hirohide Uenishi Christopher K Tuggle Yasuhiro Takeuchi Max F Rothschild Claire Rogel-Gaillard Chankyu Park Denis Milan Hendrik-Jan Megens Shengting Li Denis M Larkin Heebal Kim Laurent A F Frantz Mario Caccamo Hyeonju Ahn Bronwen L Aken Anna Anselmo Christian Anthon Loretta Auvil Bouabid Badaoui Craig W Beattie Christian Bendixen Daniel Berman Frank Blecha Jonas Blomberg Lars Bolund Mirte Bosse Sara Botti Zhan Bujie Megan Bystrom Boris Capitanu Denise Carvalho-Silva Patrick Chardon Celine Chen Ryan Cheng Sang-Haeng Choi William Chow Richard C Clark Christopher Clee Richard P M A Crooijmans Harry D Dawson Patrice Dehais Fioravante De Sapio Bert Dibbits Nizar Drou Zhi-Qiang Du Kellye Eversole João Fadista Susan Fairley Thomas Faraut Geoffrey J Faulkner Katie E Fowler Merete Fredholm Eric Fritz James G R Gilbert Elisabetta Giuffra Jan Gorodkin Darren K Griffin Jennifer L Harrow Alexander Hayward Kerstin Howe Zhi-Liang Hu Sean J Humphray Toby Hunt Henrik Hornshøj Jin-Tae Jeon Patric Jern Matthew Jones Jerzy Jurka Hiroyuki Kanamori Ronan Kapetanovic Jaebum Kim Jae-Hwan Kim Kyu-Won Kim Tae-Hun Kim Greger Larson Kyooyeol Lee Kyung-Tai Lee Richard Leggett Harris A Lewin Yingrui Li Wansheng Liu Jane E Loveland Yao Lu Joan K Lunney Jian Ma Ole Madsen Katherine Mann Lucy Matthews Stuart McLaren Takeya Morozumi Michael P Murtaugh Jitendra Narayan Dinh Truong Nguyen Peixiang Ni Song-Jung Oh Suneel Onteru Frank Panitz Eung-Woo Park Hong-Seog Park Geraldine Pascal Yogesh Paudel Miguel Perez-Enciso Ricardo Ramirez-Gonzalez James M Reecy Sandra Rodriguez-Zas Gary A Rohrer Lauretta Rund Yongming Sang Kyle Schachtschneider Joshua G Schraiber John Schwartz Linda Scobie Carol Scott Stephen Searle Bertrand Servin Bruce R Southey Goran Sperber Peter Stadler Jonathan V Sweedler Hakim Tafer Bo Thomsen Rashmi Wali Jian Wang Jun Wang Simon White Xun Xu Martine Yerle Guojie Zhang Jianguo Zhang Jie Zhang Shuhong Zhao Jane Rogers Carol Churcher Lawrence B Schook

Nature 2012 Nov;491(7424):393-8

Animal Breeding and Genomics Centre, Wageningen University, De Elst 1, 6708 WD, Wageningen, The Netherlands.

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http://www.umass.edu/vetimm/docs/Groenen_etal_2012.pdf
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http://www.nature.com/doifinder/10.1038/nature11622
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http://dx.doi.org/10.1038/nature11622DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3566564PMC
November 2012

Multisite haplotype on cattle chromosome 3 is associated with quantitative trait locus effects on lactation traits.

Physiol Genomics 2011 Nov 6;43(21):1185-97. Epub 2011 Sep 6.

Institute for Genomic Biology, Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.

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http://dx.doi.org/10.1152/physiolgenomics.00253.2010DOI Listing
November 2011

Enhancing the role of veterinary vaccines reducing zoonotic diseases of humans: linking systems biology with vaccine development.

Vaccine 2011 Sep 7;29(41):7197-206. Epub 2011 Jun 7.

Department of Veterinary Pathobiology, College of Veterinary Medicine & Biomedical Sciences, Texas A&M University, College Station, TX 77843-4467, USA.

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http://dx.doi.org/10.1016/j.vaccine.2011.05.080DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3170448PMC
September 2011

Predisposition of cows to mastitis in non-infected mammary glands: effects of dietary-induced negative energy balance during mid-lactation on immune-related genes.

Funct Integr Genomics 2011 Mar 31;11(1):151-6. Epub 2010 Aug 31.

Department of Animal Sciences, University of Illinois, 1207 W. Gregory Dr., Urbana, IL 61801, USA.

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http://dx.doi.org/10.1007/s10142-010-0186-zDOI Listing
March 2011

Transferase activity function and system development process are critical in cattle embryo development.

Funct Integr Genomics 2011 Mar 16;11(1):139-50. Epub 2010 Sep 16.

Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, USA.

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http://dx.doi.org/10.1007/s10142-010-0189-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3053413PMC
March 2011

A small set of extra-embryonic genes defines a new landmark for bovine embryo staging.

Reproduction 2011 Jan 6;141(1):79-89. Epub 2010 Oct 6.

INRA-ENVA, UMR 1198 Biologie du Développement et Reproduction, Domaine de Vilvert, Jouy en Josas, France.

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http://dx.doi.org/10.1530/REP-10-0174DOI Listing
January 2011

Rewirable gene regulatory networks in the preimplantation embryonic development of three mammalian species.

Genome Res 2010 Jun 10;20(6):804-15. Epub 2010 Mar 10.

Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.

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http://dx.doi.org/10.1101/gr.100594.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877577PMC
June 2010

Functional annotation of novel lineage-specific genes using co-expression and promoter analysis.

BMC Genomics 2010 Mar 9;11:161. Epub 2010 Mar 9.

Department of Animal Sciences, University of Illinois at Urbana-Champaign, 210 Edward R Madigan Laboratory, 1201 W Gregory Dr, Urbana, IL 61801, USA.

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http://dx.doi.org/10.1186/1471-2164-11-161DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2848242PMC
March 2010

Every genome sequence needs a good map.

Genome Res 2009 Nov 13;19(11):1925-8. Epub 2009 Jul 13.

Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.

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http://genome.cshlp.org/cgi/doi/10.1101/gr.094557.109
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http://dx.doi.org/10.1101/gr.094557.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2775595PMC
November 2009

Gene expression profiles of bovine caruncular and intercaruncular endometrium at implantation.

Physiol Genomics 2009 Sep 21;39(1):14-27. Epub 2009 Jul 21.

Institut National de la Recherche Agronomique, Unité Mixte de Recherche (UMR) 1198 Biologie du Développement et Reproduction, Jouy-en-Josas, France.

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http://dx.doi.org/10.1152/physiolgenomics.90404.2008DOI Listing
September 2009

SyntenyTracker: a tool for defining homologous synteny blocks using radiation hybrid maps and whole-genome sequence.

BMC Res Notes 2009 Jul 23;2:148. Epub 2009 Jul 23.

Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.

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http://dx.doi.org/10.1186/1756-0500-2-148DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2726151PMC
July 2009

Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories.

Genome Res 2009 May 2;19(5):770-7. Epub 2009 Apr 2.

Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.

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http://dx.doi.org/10.1101/gr.086546.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2675965PMC
May 2009

Embryonic gene expression profiling using microarray analysis.

Reprod Fertil Dev 2009 ;21(1):22-30

Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1071/rd08217DOI Listing
April 2009

Endometrium as an early sensor of in vitro embryo manipulation technologies.

Proc Natl Acad Sci U S A 2009 Apr 18;106(14):5687-92. Epub 2009 Mar 18.

Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1198 Biologie du Développement et Reproduction, F-78352 Jouy-en-Josas, France.

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http://dx.doi.org/10.1073/pnas.0812722106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2667091PMC
April 2009

Genetics. It's a bull's market.

Authors:
Harris A Lewin

Science 2009 Apr;324(5926):478-9

Institute for Genomic Biology and Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.

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http://dx.doi.org/10.1126/science.1173880DOI Listing
April 2009

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Authors:
Christine G Elsik Ross L Tellam Kim C Worley Richard A Gibbs Donna M Muzny George M Weinstock David L Adelson Evan E Eichler Laura Elnitski Roderic Guigó Debora L Hamernik Steve M Kappes Harris A Lewin David J Lynn Frank W Nicholas Alexandre Reymond Monique Rijnkels Loren C Skow Evgeny M Zdobnov Lawrence Schook James Womack Tyler Alioto Stylianos E Antonarakis Alex Astashyn Charles E Chapple Hsiu-Chuan Chen Jacqueline Chrast Francisco Câmara Olga Ermolaeva Charlotte N Henrichsen Wratko Hlavina Yuri Kapustin Boris Kiryutin Paul Kitts Felix Kokocinski Melissa Landrum Donna Maglott Kim Pruitt Victor Sapojnikov Stephen M Searle Victor Solovyev Alexandre Souvorov Catherine Ucla Carine Wyss Juan M Anzola Daniel Gerlach Eran Elhaik Dan Graur Justin T Reese Robert C Edgar John C McEwan Gemma M Payne Joy M Raison Thomas Junier Evgenia V Kriventseva Eduardo Eyras Mireya Plass Ravikiran Donthu Denis M Larkin James Reecy Mary Q Yang Lin Chen Ze Cheng Carol G Chitko-McKown George E Liu Lakshmi K Matukumalli Jiuzhou Song Bin Zhu Daniel G Bradley Fiona S L Brinkman Lilian P L Lau Matthew D Whiteside Angela Walker Thomas T Wheeler Theresa Casey J Bruce German Danielle G Lemay Nauman J Maqbool Adrian J Molenaar Seongwon Seo Paul Stothard Cynthia L Baldwin Rebecca Baxter Candice L Brinkmeyer-Langford Wendy C Brown Christopher P Childers Timothy Connelley Shirley A Ellis Krista Fritz Elizabeth J Glass Carolyn T A Herzig Antti Iivanainen Kevin K Lahmers Anna K Bennett C Michael Dickens James G R Gilbert Darren E Hagen Hanni Salih Jan Aerts Alexandre R Caetano Brian Dalrymple Jose Fernando Garcia Clare A Gill Stefan G Hiendleder Erdogan Memili Diane Spurlock John L Williams Lee Alexander Michael J Brownstein Leluo Guan Robert A Holt Steven J M Jones Marco A Marra Richard Moore Stephen S Moore Andy Roberts Masaaki Taniguchi Richard C Waterman Joseph Chacko Mimi M Chandrabose Andy Cree Marvin Diep Dao Huyen H Dinh Ramatu Ayiesha Gabisi Sandra Hines Jennifer Hume Shalini N Jhangiani Vandita Joshi Christie L Kovar Lora R Lewis Yih-Shin Liu John Lopez Margaret B Morgan Ngoc Bich Nguyen Geoffrey O Okwuonu San Juana Ruiz Jireh Santibanez Rita A Wright Christian Buhay Yan Ding Shannon Dugan-Rocha Judith Herdandez Michael Holder Aniko Sabo Amy Egan Jason Goodell Katarzyna Wilczek-Boney Gerald R Fowler Matthew Edward Hitchens Ryan J Lozado Charles Moen David Steffen James T Warren Jingkun Zhang Readman Chiu Jacqueline E Schein K James Durbin Paul Havlak Huaiyang Jiang Yue Liu Xiang Qin Yanru Ren Yufeng Shen Henry Song Stephanie Nicole Bell Clay Davis Angela Jolivet Johnson Sandra Lee Lynne V Nazareth Bella Mayurkumar Patel Ling-Ling Pu Selina Vattathil Rex Lee Williams Stacey Curry Cerissa Hamilton Erica Sodergren David A Wheeler Wes Barris Gary L Bennett André Eggen Ronnie D Green Gregory P Harhay Matthew Hobbs Oliver Jann John W Keele Matthew P Kent Sigbjørn Lien Stephanie D McKay Sean McWilliam Abhirami Ratnakumar Robert D Schnabel Timothy Smith Warren M Snelling Tad S Sonstegard Roger T Stone Yoshikazu Sugimoto Akiko Takasuga Jeremy F Taylor Curtis P Van Tassell Michael D Macneil Antonio R R Abatepaulo Colette A Abbey Virpi Ahola Iassudara G Almeida Ariel F Amadio Elen Anatriello Suria M Bahadue Fernando H Biase Clayton R Boldt Jeffery A Carroll Wanessa A Carvalho Eliane P Cervelatti Elsa Chacko Jennifer E Chapin Ye Cheng Jungwoo Choi Adam J Colley Tatiana A de Campos Marcos De Donato Isabel K F de Miranda Santos Carlo J F de Oliveira Heather Deobald Eve Devinoy Kaitlin E Donohue Peter Dovc Annett Eberlein Carolyn J Fitzsimmons Alessandra M Franzin Gustavo R Garcia Sem Genini Cody J Gladney Jason R Grant Marion L Greaser Jonathan A Green Darryl L Hadsell Hatam A Hakimov Rob Halgren Jennifer L Harrow Elizabeth A Hart Nicola Hastings Marta Hernandez Zhi-Liang Hu Aaron Ingham Terhi Iso-Touru Catherine Jamis Kirsty Jensen Dimos Kapetis Tovah Kerr Sari S Khalil Hasan Khatib Davood Kolbehdari Charu G Kumar Dinesh Kumar Richard Leach Justin C-M Lee Changxi Li Krystin M Logan Roberto Malinverni Elisa Marques William F Martin Natalia F Martins Sandra R Maruyama Raffaele Mazza Kim L McLean Juan F Medrano Barbara T Moreno Daniela D Moré Carl T Muntean Hari P Nandakumar Marcelo F G Nogueira Ingrid Olsaker Sameer D Pant Francesca Panzitta Rosemeire C P Pastor Mario A Poli Nathan Poslusny Satyanarayana Rachagani Shoba Ranganathan Andrej Razpet Penny K Riggs Gonzalo Rincon Nelida Rodriguez-Osorio Sandra L Rodriguez-Zas Natasha E Romero Anne Rosenwald Lillian Sando Sheila M Schmutz Libing Shen Laura Sherman Bruce R Southey Ylva Strandberg Lutzow Jonathan V Sweedler Imke Tammen Bhanu Prakash V L Telugu Jennifer M Urbanski Yuri T Utsunomiya Chris P Verschoor Ashley J Waardenberg Zhiquan Wang Robert Ward Rosemarie Weikard Thomas H Welsh Stephen N White Laurens G Wilming Kris R Wunderlich Jianqi Yang Feng-Qi Zhao

Science 2009 Apr;324(5926):522-8

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http://dx.doi.org/10.1126/science.1169588DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2943200PMC
April 2009

Unlocking the bovine genome.

BMC Genomics 2009 Apr 24;10:193. Epub 2009 Apr 24.

CSIRO Livestock Industries, St Lucia, QLD, Australia.

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http://dx.doi.org/10.1186/1471-2164-10-193DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2680899PMC
April 2009

Reconstruction of metabolic pathways for the cattle genome.

BMC Syst Biol 2009 Mar 12;3:33. Epub 2009 Mar 12.

Institute for Genomic Biology, University of Illinois at Urbana-Champaign, IL 61801, USA.

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http://dx.doi.org/10.1186/1752-0509-3-33DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2669051PMC
March 2009

Construction of high-resolution comparative maps in mammals using BAC-end sequences.

Methods Mol Biol 2008 ;422:79-90

Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, USA.

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http://dx.doi.org/10.1007/978-1-59745-581-7_6DOI Listing
August 2008

Nutrition-induced ketosis alters metabolic and signaling gene networks in liver of periparturient dairy cows.

Physiol Genomics 2007 Dec 9;32(1):105-16. Epub 2007 Oct 9.

Department of Animal Sciences, University of Illinois, Urbana, IL 61801, USA.

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http://dx.doi.org/10.1152/physiolgenomics.00188.2007DOI Listing
December 2007

Discovery and characterization of 91 novel transcripts expressed in cattle placenta.

BMC Genomics 2007 May 9;8:113. Epub 2007 May 9.

Laboratory of Mammalian Genome Biology, Department of Animal Sciences, University of Illinois at Urbana-Champaign, 210 Edward R. Madigan Laboratory, Urbana, IL 61801, USA.

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http://dx.doi.org/10.1186/1471-2164-8-113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1884150PMC
May 2007

Nuclear reprogramming of cloned embryos and its implications for therapeutic cloning.

Nat Genet 2007 Mar;39(3):295-302

Center for Regenerative Biology and Department of Animal Science, University of Connecticut, Storrs, Connecticut 06269, USA.

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http://dx.doi.org/10.1038/ng1973DOI Listing
March 2007

Genomic organization and evolution of the ULBP genes in cattle.

BMC Genomics 2006 Sep 5;7:227. Epub 2006 Sep 5.

Laboratory of Immunogenetics, Department of Animal Sciences, University of Illinois at Urbana-Champaign, 210 Edward R, Madigan Laboratory, 1201 W, Gregory Dr., Urbana, IL 61801, USA.

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http://dx.doi.org/10.1186/1471-2164-7-227DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1574312PMC
September 2006

Discovery of eight novel divergent homologs expressed in cattle placenta.

Physiol Genomics 2006 May 22;25(3):405-13. Epub 2006 Mar 22.

Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.

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http://dx.doi.org/10.1152/physiolgenomics.00307.2005DOI Listing
May 2006

Accelerated expansion of group IID-like phospholipase A2 genes in Bos taurus.

Genomics 2006 Apr 15;87(4):527-33. Epub 2006 Feb 15.

Institute of Animal Sciences, Agricultural Research Organization, The Volcani Center, Bet Dagan 50250, Israel.

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http://dx.doi.org/10.1016/j.ygeno.2005.12.015DOI Listing
April 2006

Global gene expression profiles reveal significant nuclear reprogramming by the blastocyst stage after cloning.

Proc Natl Acad Sci U S A 2005 Dec 28;102(49):17582-7. Epub 2005 Nov 28.

Center for Regenerative Biology/Department of Animal Science, University of Connecticut, Storrs, CT 06269, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0508952102
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http://dx.doi.org/10.1073/pnas.0508952102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1308920PMC
December 2005

A 7872 cDNA microarray and its use in bovine functional genomics.

Vet Immunol Immunopathol 2005 May;105(3-4):235-45

Department of Animal Sciences, University of Illinois, 206 Edward R. Madigan Laboratory, 1201 West Gregory Drive, Urbana, IL 61801, USA.

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http://dx.doi.org/10.1016/j.vetimm.2005.02.003DOI Listing
May 2005

ESTIMA, a tool for EST management in a multi-project environment.

BMC Bioinformatics 2004 Nov 4;5:176. Epub 2004 Nov 4.

Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.

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http://dx.doi.org/10.1186/1471-2105-5-176DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC533868PMC
November 2004

Cytokine mRNA expression in B cells from bovine leukemia virus-infected cattle with persistent lymphocytosis.

Cytokine 2004 Oct;28(1):25-8

Department of Animal Sciences, Laboratory of Immunogenetics, Edward R. Madigan Laboratory, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana 61801, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S104346660400185
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http://dx.doi.org/10.1016/j.cyto.2004.06.004DOI Listing
October 2004

Neospora caninum-infected cattle develop parasite-specific CD4+ cytotoxic T lymphocytes.

Infect Immun 2003 Jun;71(6):3272-9

Department of Veterinary Microbiology and Pathology, Washington State University, Pullman 99164, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC155777PMC
http://dx.doi.org/10.1128/iai.71.6.3272-3279.2003DOI Listing
June 2003

Allerton III. Beyond livestock genomics.

Anim Biotechnol 2003 May;14(1):77-82

USDA-CSREES, Washington, District of Columbia, USA.

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http://www.tandfonline.com/doi/abs/10.1081/ABIO-120022137
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http://dx.doi.org/10.1081/ABIO-120022137DOI Listing
May 2003

MHC class I-like genes in cattle, MHCLA, with similarity to genes encoding NK cell stimulatory ligands.

Immunogenetics 2003 Apr 29;55(1):16-22. Epub 2003 Mar 29.

Department of Animal Sciences, University of Illinois at Urbana-Champaign, 210 Edward R. Madigan Laboratory, 1201 W. Gregory Dr., Urbana, IL 61801, USA.

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http://dx.doi.org/10.1007/s00251-003-0551-3DOI Listing
April 2003

Reduced IL-2 and IL-4 mRNA expression in CD4+ T cells from bovine leukemia virus-infected cows with persistent lymphocytosis.

Virology 2002 Dec;304(1):1-9

Departments of Animal Sciences, Laboratory of Immunogenetics, University of Illinois at Urbana-Champaign, Illinois 61801, USA.

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http://dx.doi.org/10.1006/viro.2002.1651DOI Listing
December 2002

A 3800 gene microarray for cattle functional genomics: comparison of gene expression in spleen, placenta, and brain.

Anim Biotechnol 2002 May;13(1):163-72

The W M. Keck Center for Comparative and Functional Genomics, University of Illinois at Urbana-Champaign, 61801, USA.

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http://dx.doi.org/10.1081/ABIO-120005779DOI Listing
May 2002