Publications by authors named "Harold Swerdlow"

26Publications

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes.

Nat Methods 2015 Jun 27;12(6):519-22. Epub 2015 Apr 27.

1] Sanger Institute-EBI Single-Cell Genomics Centre, Wellcome Trust Sanger Institute, Hinxton, UK. [2] Department of Human Genetics, University of Leuven, Leuven, Belgium.

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http://dx.doi.org/10.1038/nmeth.3370DOI Listing
June 2015

Improved Protocols for Illumina Sequencing.

Curr Protoc Hum Genet 2014 Jan 21;80:18.2.1-42. Epub 2014 Jan 21.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom.

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http://dx.doi.org/10.1002/0471142905.hg1802s80DOI Listing
January 2014

Evaluation and optimisation of preparative semi-automated electrophoresis systems for Illumina library preparation.

Electrophoresis 2012 Dec 12;33(23):3521-8. Epub 2012 Nov 12.

Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire CB10 1SA, UK.

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http://dx.doi.org/10.1002/elps.201200128DOI Listing
December 2012

International network of cancer genome projects.

Authors:
Thomas J Hudson Warwick Anderson Axel Artez Anna D Barker Cindy Bell Rosa R Bernabé M K Bhan Fabien Calvo Iiro Eerola Daniela S Gerhard Alan Guttmacher Mark Guyer Fiona M Hemsley Jennifer L Jennings David Kerr Peter Klatt Patrik Kolar Jun Kusada David P Lane Frank Laplace Lu Youyong Gerd Nettekoven Brad Ozenberger Jane Peterson T S Rao Jacques Remacle Alan J Schafer Tatsuhiro Shibata Michael R Stratton Joseph G Vockley Koichi Watanabe Huanming Yang Matthew M F Yuen Bartha M Knoppers Martin Bobrow Anne Cambon-Thomsen Lynn G Dressler Stephanie O M Dyke Yann Joly Kazuto Kato Karen L Kennedy Pilar Nicolás Michael J Parker Emmanuelle Rial-Sebbag Carlos M Romeo-Casabona Kenna M Shaw Susan Wallace Georgia L Wiesner Nikolajs Zeps Peter Lichter Andrew V Biankin Christian Chabannon Lynda Chin Bruno Clément Enrique de Alava Françoise Degos Martin L Ferguson Peter Geary D Neil Hayes Thomas J Hudson Amber L Johns Arek Kasprzyk Hidewaki Nakagawa Robert Penny Miguel A Piris Rajiv Sarin Aldo Scarpa Tatsuhiro Shibata Marc van de Vijver P Andrew Futreal Hiroyuki Aburatani Mónica Bayés David D L Botwell Peter J Campbell Xavier Estivill Daniela S Gerhard Sean M Grimmond Ivo Gut Martin Hirst Carlos López-Otín Partha Majumder Marco Marra John D McPherson Hidewaki Nakagawa Zemin Ning Xose S Puente Yijun Ruan Tatsuhiro Shibata Michael R Stratton Hendrik G Stunnenberg Harold Swerdlow Victor E Velculescu Richard K Wilson Hong H Xue Liu Yang Paul T Spellman Gary D Bader Paul C Boutros Peter J Campbell Paul Flicek Gad Getz Roderic Guigó Guangwu Guo David Haussler Simon Heath Tim J Hubbard Tao Jiang Steven M Jones Qibin Li Nuria López-Bigas Ruibang Luo Lakshmi Muthuswamy B F Francis Ouellette John V Pearson Xose S Puente Victor Quesada Benjamin J Raphael Chris Sander Tatsuhiro Shibata Terence P Speed Lincoln D Stein Joshua M Stuart Jon W Teague Yasushi Totoki Tatsuhiko Tsunoda Alfonso Valencia David A Wheeler Honglong Wu Shancen Zhao Guangyu Zhou Lincoln D Stein Roderic Guigó Tim J Hubbard Yann Joly Steven M Jones Arek Kasprzyk Mark Lathrop Nuria López-Bigas B F Francis Ouellette Paul T Spellman Jon W Teague Gilles Thomas Alfonso Valencia Teruhiko Yoshida Karen L Kennedy Myles Axton Stephanie O M Dyke P Andrew Futreal Daniela S Gerhard Chris Gunter Mark Guyer Thomas J Hudson John D McPherson Linda J Miller Brad Ozenberger Kenna M Shaw Arek Kasprzyk Lincoln D Stein Junjun Zhang Syed A Haider Jianxin Wang Christina K Yung Anthony Cros Anthony Cross Yong Liang Saravanamuttu Gnaneshan Jonathan Guberman Jack Hsu Martin Bobrow Don R C Chalmers Karl W Hasel Yann Joly Terry S H Kaan Karen L Kennedy Bartha M Knoppers William W Lowrance Tohru Masui Pilar Nicolás Emmanuelle Rial-Sebbag Laura Lyman Rodriguez Catherine Vergely Teruhiko Yoshida Sean M Grimmond Andrew V Biankin David D L Bowtell Nicole Cloonan Anna deFazio James R Eshleman Dariush Etemadmoghadam Brooke B Gardiner Brooke A Gardiner James G Kench Aldo Scarpa Robert L Sutherland Margaret A Tempero Nicola J Waddell Peter J Wilson John D McPherson Steve Gallinger Ming-Sound Tsao Patricia A Shaw Gloria M Petersen Debabrata Mukhopadhyay Lynda Chin Ronald A DePinho Sarah Thayer Lakshmi Muthuswamy Kamran Shazand Timothy Beck Michelle Sam Lee Timms Vanessa Ballin Youyong Lu Jiafu Ji Xiuqing Zhang Feng Chen Xueda Hu Guangyu Zhou Qi Yang Geng Tian Lianhai Zhang Xiaofang Xing Xianghong Li Zhenggang Zhu Yingyan Yu Jun Yu Huanming Yang Mark Lathrop Jörg Tost Paul Brennan Ivana Holcatova David Zaridze Alvis Brazma Lars Egevard Egor Prokhortchouk Rosamonde Elizabeth Banks Mathias Uhlén Anne Cambon-Thomsen Juris Viksna Fredrik Ponten Konstantin Skryabin Michael R Stratton P Andrew Futreal Ewan Birney Ake Borg Anne-Lise Børresen-Dale Carlos Caldas John A Foekens Sancha Martin Jorge S Reis-Filho Andrea L Richardson Christos Sotiriou Hendrik G Stunnenberg Giles Thoms Marc van de Vijver Laura van't Veer Fabien Calvo Daniel Birnbaum Hélène Blanche Pascal Boucher Sandrine Boyault Christian Chabannon Ivo Gut Jocelyne D Masson-Jacquemier Mark Lathrop Iris Pauporté Xavier Pivot Anne Vincent-Salomon Eric Tabone Charles Theillet Gilles Thomas Jörg Tost Isabelle Treilleux Fabien Calvo Paulette Bioulac-Sage Bruno Clément Thomas Decaens Françoise Degos Dominique Franco Ivo Gut Marta Gut Simon Heath Mark Lathrop Didier Samuel Gilles Thomas Jessica Zucman-Rossi Peter Lichter Roland Eils Benedikt Brors Jan O Korbel Andrey Korshunov Pablo Landgraf Hans Lehrach Stefan Pfister Bernhard Radlwimmer Guido Reifenberger Michael D Taylor Christof von Kalle Partha P Majumder Rajiv Sarin T S Rao M K Bhan Aldo Scarpa Paolo Pederzoli Rita A Lawlor Massimo Delledonne Alberto Bardelli Andrew V Biankin Sean M Grimmond Thomas Gress David Klimstra Giuseppe Zamboni Tatsuhiro Shibata Yusuke Nakamura Hidewaki Nakagawa Jun Kusada Tatsuhiko Tsunoda Satoru Miyano Hiroyuki Aburatani Kazuto Kato Akihiro Fujimoto Teruhiko Yoshida Elias Campo Carlos López-Otín Xavier Estivill Roderic Guigó Silvia de Sanjosé Miguel A Piris Emili Montserrat Marcos González-Díaz Xose S Puente Pedro Jares Alfonso Valencia Heinz Himmelbauer Heinz Himmelbaue Victor Quesada Silvia Bea Michael R Stratton P Andrew Futreal Peter J Campbell Anne Vincent-Salomon Andrea L Richardson Jorge S Reis-Filho Marc van de Vijver Gilles Thomas Jocelyne D Masson-Jacquemier Samuel Aparicio Ake Borg Anne-Lise Børresen-Dale Carlos Caldas John A Foekens Hendrik G Stunnenberg Laura van't Veer Douglas F Easton Paul T Spellman Sancha Martin Anna D Barker Lynda Chin Francis S Collins Carolyn C Compton Martin L Ferguson Daniela S Gerhard Gad Getz Chris Gunter Alan Guttmacher Mark Guyer D Neil Hayes Eric S Lander Brad Ozenberger Robert Penny Jane Peterson Chris Sander Kenna M Shaw Terence P Speed Paul T Spellman Joseph G Vockley David A Wheeler Richard K Wilson Thomas J Hudson Lynda Chin Bartha M Knoppers Eric S Lander Peter Lichter Lincoln D Stein Michael R Stratton Warwick Anderson Anna D Barker Cindy Bell Martin Bobrow Wylie Burke Francis S Collins Carolyn C Compton Ronald A DePinho Douglas F Easton P Andrew Futreal Daniela S Gerhard Anthony R Green Mark Guyer Stanley R Hamilton Tim J Hubbard Olli P Kallioniemi Karen L Kennedy Timothy J Ley Edison T Liu Youyong Lu Partha Majumder Marco Marra Brad Ozenberger Jane Peterson Alan J Schafer Paul T Spellman Hendrik G Stunnenberg Brandon J Wainwright Richard K Wilson Huanming Yang

Nature 2010 Apr;464(7291):993-8

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http://dx.doi.org/10.1038/nature08987DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2902243PMC
April 2010

Improved protocols for the illumina genome analyzer sequencing system.

Curr Protoc Hum Genet 2009 Jul;Chapter 18:Unit 18.2

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom.

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http://dx.doi.org/10.1002/0471142905.hg1802s62DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3849550PMC
July 2009

A large genome center's improvements to the Illumina sequencing system.

Nat Methods 2008 Dec;5(12):1005-10

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, UK.

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http://dx.doi.org/10.1038/nmeth.1270DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2610436PMC
December 2008

Accurate whole human genome sequencing using reversible terminator chemistry.

Authors:
David R Bentley Shankar Balasubramanian Harold P Swerdlow Geoffrey P Smith John Milton Clive G Brown Kevin P Hall Dirk J Evers Colin L Barnes Helen R Bignell Jonathan M Boutell Jason Bryant Richard J Carter R Keira Cheetham Anthony J Cox Darren J Ellis Michael R Flatbush Niall A Gormley Sean J Humphray Leslie J Irving Mirian S Karbelashvili Scott M Kirk Heng Li Xiaohai Liu Klaus S Maisinger Lisa J Murray Bojan Obradovic Tobias Ost Michael L Parkinson Mark R Pratt Isabelle M J Rasolonjatovo Mark T Reed Roberto Rigatti Chiara Rodighiero Mark T Ross Andrea Sabot Subramanian V Sankar Aylwyn Scally Gary P Schroth Mark E Smith Vincent P Smith Anastassia Spiridou Peta E Torrance Svilen S Tzonev Eric H Vermaas Klaudia Walter Xiaolin Wu Lu Zhang Mohammed D Alam Carole Anastasi Ify C Aniebo David M D Bailey Iain R Bancarz Saibal Banerjee Selena G Barbour Primo A Baybayan Vincent A Benoit Kevin F Benson Claire Bevis Phillip J Black Asha Boodhun Joe S Brennan John A Bridgham Rob C Brown Andrew A Brown Dale H Buermann Abass A Bundu James C Burrows Nigel P Carter Nestor Castillo Maria Chiara E Catenazzi Simon Chang R Neil Cooley Natasha R Crake Olubunmi O Dada Konstantinos D Diakoumakos Belen Dominguez-Fernandez David J Earnshaw Ugonna C Egbujor David W Elmore Sergey S Etchin Mark R Ewan Milan Fedurco Louise J Fraser Karin V Fuentes Fajardo W Scott Furey David George Kimberley J Gietzen Colin P Goddard George S Golda Philip A Granieri David E Green David L Gustafson Nancy F Hansen Kevin Harnish Christian D Haudenschild Narinder I Heyer Matthew M Hims Johnny T Ho Adrian M Horgan Katya Hoschler Steve Hurwitz Denis V Ivanov Maria Q Johnson Terena James T A Huw Jones Gyoung-Dong Kang Tzvetana H Kerelska Alan D Kersey Irina Khrebtukova Alex P Kindwall Zoya Kingsbury Paula I Kokko-Gonzales Anil Kumar Marc A Laurent Cynthia T Lawley Sarah E Lee Xavier Lee Arnold K Liao Jennifer A Loch Mitch Lok Shujun Luo Radhika M Mammen John W Martin Patrick G McCauley Paul McNitt Parul Mehta Keith W Moon Joe W Mullens Taksina Newington Zemin Ning Bee Ling Ng Sonia M Novo Michael J O'Neill Mark A Osborne Andrew Osnowski Omead Ostadan Lambros L Paraschos Lea Pickering Andrew C Pike Alger C Pike D Chris Pinkard Daniel P Pliskin Joe Podhasky Victor J Quijano Come Raczy Vicki H Rae Stephen R Rawlings Ana Chiva Rodriguez Phyllida M Roe John Rogers Maria C Rogert Bacigalupo Nikolai Romanov Anthony Romieu Rithy K Roth Natalie J Rourke Silke T Ruediger Eli Rusman Raquel M Sanches-Kuiper Martin R Schenker Josefina M Seoane Richard J Shaw Mitch K Shiver Steven W Short Ning L Sizto Johannes P Sluis Melanie A Smith Jean Ernest Sohna Sohna Eric J Spence Kim Stevens Neil Sutton Lukasz Szajkowski Carolyn L Tregidgo Gerardo Turcatti Stephanie Vandevondele Yuli Verhovsky Selene M Virk Suzanne Wakelin Gregory C Walcott Jingwen Wang Graham J Worsley Juying Yan Ling Yau Mike Zuerlein Jane Rogers James C Mullikin Matthew E Hurles Nick J McCooke John S West Frank L Oaks Peter L Lundberg David Klenerman Richard Durbin Anthony J Smith

Nature 2008 Nov;456(7218):53-9

Illumina Cambridge Ltd. (Formerly Solexa Ltd), Chesterford Research Park, Little Chesterford, Nr Saffron Walden, Essex CB10 1XL, UK.

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http://dx.doi.org/10.1038/nature07517DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2581791PMC
November 2008

Fluidic preconcentrator device for capillary electrophoresis of proteins.

Anal Chem 2003 Oct;75(19):5207-12

Center for Genomics Research, Karolinska Institutet, SE- 171 77 Stockholm, Sweden.

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http://dx.doi.org/10.1021/ac0300892DOI Listing
October 2003

Concentration of DNA in a flowing stream for high-sensitivity capillary electrophoresis.

Anal Chem 2003 Sep;75(17):4467-74

Department of Human Genetics, University of Utah, 20 S. 2030 E., Room 308, Salt Lake City, Utah 84112-9454, USA.

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http://dx.doi.org/10.1021/ac034209hDOI Listing
September 2003

Growth hormone regulation of rat liver gene expression assessed by SSH and microarray.

Mol Cell Endocrinol 2002 Apr;190(1-2):125-33

Department of Medical Nutrition, Karolinska Institutet, Novum, S-141 86 Huddinge, Sweden.

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http://dx.doi.org/10.1016/s0303-7207(02)00004-7DOI Listing
April 2002