Publications by authors named "Haribabu Arthanari"

82Publications

A multi-pronged approach targeting SARS-CoV-2 proteins using ultra-large virtual screening.

Authors:
Christoph Gorgulla Krishna M Padmanabha Das Kendra E Leigh Marco Cespugli Patrick D Fischer Zi-Fu Wang Guilhem Tesseyre Shreya Pandita Alec Shnapir Anthony Calderaio Minko Gechev Alexander Rose Noam Lewis Colin Hutcheson Erez Yaffe Roni Luxenburg Henry D Herce Vedat Durmaz Thanos D Halazonetis Konstantin Fackeldey Justin J Patten Alexander Chuprina Igor Dziuba Alla Plekhova Yurii Moroz Dmytro Radchenko Olga Tarkhanova Irina Yavnyuk Christian Gruber Ryan Yust Dave Payne Anders M Näär Mark N Namchuk Robert A Davey Gerhard Wagner Jamie Kinney Haribabu Arthanari

iScience 2021 Jan 5:102021. Epub 2021 Jan 5.

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Harvard University, Boston, MA 02115, USA.

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January 2021

1H, 15N, and 13C backbone resonance assignments of the C4b-binding region from the S. aureus extracellular adherence protein.

Authors:
Indrani Pal Nitin Mishra Alvaro I Herrera Abhinav Dubey Haribabu Arthanari Brian V Geisbrecht Om Prakash

Biomol NMR Assign 2021 Jan 9. Epub 2021 Jan 9.

Department of Biochemistry and Molecular Biophysics, Kansas State University, Manhattan, KS, 66506, USA.

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January 2021

Pre-T cell receptors topologically sample self-ligands during thymocyte β-selection.

Authors:
Xiaolong Li Réka Mizsei Kemin Tan Robert J Mallis Jonathan S Duke-Cohan Aoi Akitsu Paul W Tetteh Abhinav Dubey Wonmuk Hwang Gerhard Wagner Matthew J Lang Haribabu Arthanari Jia-Huai Wang Ellis L Reinherz

Science 2021 01 17;371(6525):181-185. Epub 2020 Dec 17.

Laboratory of Immunobiology, Dana-Farber Cancer Institute, Boston, MA, USA.

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January 2021

A Multi-Pronged Approach Targeting SARS-CoV-2 Proteins Using Ultra-Large Virtual Screening.

Authors:
Christoph Gorgulla Krishna M Padmanabha Das Kendra E Leigh Marco Cespugli Patrick D Fischer Zi-Fu Wang Guilhem Tesseyre Shreya Pandita Alec Shnapir Anthony Calderaio Minko Gechev Alexander Rose Noam Lewis Colin Hutcheson Erez Yaffe Roni Luxenburg Henry D Herce Vedat Durmaz Thanos D Halazonetis Konstantin Fackeldey Justin J Patten Alexander Chuprina Igor Dziuba Alla Plekhova Yurii Moroz Dmytro Radchenko Olga Tarkhanova Irina Yavnyuk Christian Gruber Ryan Yust Dave Payne Anders M Näär Mark N Namchuk Robert A Davey Gerhard Wagner Jamie Kinney Haribabu Arthanari

ChemRxiv 2020 Jul 24. Epub 2020 Jul 24.

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Harvard University, Boston, USA.

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July 2020

Nearest-neighbor NMR spectroscopy: categorizing spectral peaks by their adjacent nuclei.

Authors:
Soumya P Behera Abhinav Dubey Wan-Na Chen Viviane S De Paula Meng Zhang Nikolaos G Sgourakis Wolfgang Bermel Gerhard Wagner Paul W Coote Haribabu Arthanari

Nat Commun 2020 11 3;11(1):5547. Epub 2020 Nov 3.

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, 02115, USA.

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November 2020

Allosterically Coupled Multisite Binding of Testosterone to Human Serum Albumin.

Authors:
Abhilash Jayaraj Heidi A Schwanz Daniel J Spencer Shalender Bhasin James A Hamilton B Jayaram Anna L Goldman Meenakshi Krishna Maya Krishnan Aashay Shah Zhendong Jin Eileen Krenzel Sashi N Nair Sid Ramesh Wen Guo Gerhard Wagner Haribabu Arthanari Liming Peng Brian Lawney Ravi Jasuja

Endocrinology 2021 Feb;162(2)

Research Program in Men's Health: Aging and Metabolism, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.

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February 2021

Correction to: The role of NMR in leveraging dynamics and entropy in drug design.

Authors:
Abhinav Dubey Koh Takeuchi Mikhail Reibarkh Haribabu Arthanari

J Biomol NMR 2020 Nov;74(10-11):499-500

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, 02215, USA.

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November 2020

The structural determinants of PH domain-mediated regulation of Akt revealed by segmental labeling.

Authors:
Nam Chu Thibault Viennet Hwan Bae Antonieta Salguero Andras Boeszoermenyi Haribabu Arthanari Philip A Cole

Elife 2020 08 3;9. Epub 2020 Aug 3.

Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Boston, United States.

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August 2020

The role of NMR in leveraging dynamics and entropy in drug design.

Authors:
Abhinav Dubey Koh Takeuchi Mikhail Reibarkh Haribabu Arthanari

J Biomol NMR 2020 Nov 27;74(10-11):479-498. Epub 2020 Jul 27.

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, 02215, USA.

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November 2020

The precious fluorine on the ring: fluorine NMR for biological systems.

Authors:
Andras Boeszoermenyi Barbara Ogórek Akshay Jain Haribabu Arthanari Gerhard Wagner

J Biomol NMR 2020 Sep 10;74(8-9):365-379. Epub 2020 Jul 10.

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 240 Longwood Avenue, Boston, MA, 02115, USA.

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September 2020

Spotlight on the Ballet of Proteins: The Structural Dynamic Properties of Proteins Illuminated by Solution NMR.

Authors:
Yuji Tokunaga Thibault Viennet Haribabu Arthanari Koh Takeuchi

Int J Mol Sci 2020 Mar 6;21(5). Epub 2020 Mar 6.

Molecular Profiling Research Center for Drug Discovery, National Institute of Advanced Industrial Science and Technology, Tokyo 135-0064, Japan.

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March 2020

An open-source drug discovery platform enables ultra-large virtual screens.

Authors:
Christoph Gorgulla Andras Boeszoermenyi Zi-Fu Wang Patrick D Fischer Paul W Coote Krishna M Padmanabha Das Yehor S Malets Dmytro S Radchenko Yurii S Moroz David A Scott Konstantin Fackeldey Moritz Hoffmann Iryna Iavniuk Gerhard Wagner Haribabu Arthanari

Nature 2020 04 9;580(7805):663-668. Epub 2020 Mar 9.

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Harvard University, Boston, MA, USA.

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April 2020

Acyl Homoserine Lactone Analog Modulators of the Rhll Quorum Sensing Signal Synthase.

Authors:
Daniel Shin Christoph Gorgulla Michelle E Boursier Neilson Rexrode Eric C Brown Haribabu Arthanari Helen E Blackwell Rajesh Nagarajan

ACS Chem Biol 2019 10 9;14(10):2305-2314. Epub 2019 Oct 9.

Department of Chemistry and Biochemistry , Boise State University , 1910 University Dr. , Boise , Idaho 83725 , United States.

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October 2019

Structure determination using solution NMR: Is it worth the effort?

Authors:
Koh Takeuchi Kumaran Baskaran Haribabu Arthanari

J Magn Reson 2019 09 13;306:195-201. Epub 2019 Jul 13.

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, United States; Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115, United States. Electronic address:

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September 2019

Emerging solution NMR methods to illuminate the structural and dynamic properties of proteins.

Authors:
Haribabu Arthanari Koh Takeuchi Abhinav Dubey Gerhard Wagner

Curr Opin Struct Biol 2019 10 19;58:294-304. Epub 2019 Jul 19.

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, United States. Electronic address:

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October 2019

Correction to "Abietane-Type Diterpenoids Inhibit Protein Tyrosine Phosphatases by Stabilizing an Inactive Enzyme Conformation".

Authors:
Michael K Hjortness Laura Riccardi Akarawin Hongdusit Alex Ruppe Mengxia Zhao Edward Y Kim Peter H Zwart Banumathi Sankaran Haribabu Arthanari Marcelo C Sousa Marco De Vivo Jerome M Fox

Biochemistry 2019 Jun 5;58(24):2797. Epub 2019 Jun 5.

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June 2019

Aromatic F-C TROSY: a background-free approach to probe biomolecular structure, function, and dynamics.

Authors:
Andras Boeszoermenyi Sandeep Chhabra Abhinav Dubey Denitsa L Radeva Nikola T Burdzhiev Christo D Chanev Ognyan I Petrov Vladimir M Gelev Meng Zhang Clemens Anklin Helena Kovacs Gerhard Wagner Ilya Kuprov Koh Takeuchi Haribabu Arthanari

Nat Methods 2019 04 11;16(4):333-340. Epub 2019 Mar 11.

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA.

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April 2019

NMR: an essential structural tool for integrative studies of T cell development, pMHC ligand recognition and TCR mechanobiology.

Authors:
Robert J Mallis Kristine N Brazin Jonathan S Duke-Cohan Wonmuk Hwang Jia-Huai Wang Gerhard Wagner Haribabu Arthanari Matthew J Lang Ellis L Reinherz

J Biomol NMR 2019 Jul 27;73(6-7):319-332. Epub 2019 Feb 27.

Laboratory of Immunobiology, Dana-Farber Cancer Institute, Boston, MA, 02115, USA.

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July 2019

Backbone resonance assignments of innate immune evasion protein EapH2 from the S. aureus.

Authors:
Alvaro I Herrera Abhinav Dubey Brian V Geisbrecht Haribabu Arthanari Om Prakash

Biomol NMR Assign 2019 04 7;13(1):219-222. Epub 2019 Feb 7.

Department of Biochemistry and Molecular Biophysics, Kansas State University, 141 Chalmers Hall, Manhattan, KS, 66506, USA.

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April 2019

Nonuniform Sampling for NMR Spectroscopy.

Authors:
Scott Robson Haribabu Arthanari Sven G Hyberts Gerhard Wagner

Methods Enzymol 2019 26;614:263-291. Epub 2018 Oct 26.

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, United States. Electronic address:

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August 2019