Hans Binder

Hans Binder

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Hans Binder

Publications by authors named "Hans Binder"

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Footprints of Sepsis Framed Within Community Acquired Pneumonia in the Blood Transcriptome.

Front Immunol 2018 17;9:1620. Epub 2018 Jul 17.

Interdisciplinary Centre for Bioinformatics, Universität Leipzig, Leipzig, Germany.

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http://dx.doi.org/10.3389/fimmu.2018.01620DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6056630PMC
July 2018

Combined SOM-portrayal of gene expression and DNA methylation landscapes disentangles modes of epigenetic regulation in glioblastoma.

Epigenomics 2018 06 11;10(6):745-764. Epub 2018 Jun 11.

Interdisciplinary Centre for Bioinformatics, Universität Leipzig, Härtelstr. 16-18, 04107 Leipzig, Germany.

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http://dx.doi.org/10.2217/epi-2017-0140DOI Listing
June 2018

Pseudotime Dynamics in Melanoma Single-Cell Transcriptomes Reveals Different Mechanisms of Tumor Progression.

Biology (Basel) 2018 Apr 3;7(2). Epub 2018 Apr 3.

Department of Dermatology, Venereology and Allergology, University of Leipzig, 04103 Leipzig, Germany.

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http://dx.doi.org/10.3390/biology7020023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6022966PMC
April 2018

Body typing of children and adolescents using 3D-body scanning.

PLoS One 2017 20;12(10):e0186881. Epub 2017 Oct 20.

Interdisciplinary Centre for Bioinformatics, Leipzig University, Härtelstraße 16-18, Leipzig, Germany.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0186881PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5650166PMC
November 2017

Novel Anthropometry Based on 3D-Bodyscans Applied to a Large Population Based Cohort.

PLoS One 2016 28;11(7):e0159887. Epub 2016 Jul 28.

Interdisciplinary Centre for Bioinformatics, Leipzig University, Härtelstraße 16 - 18, 04107 Leipzig, Germany.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0159887PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4965021PMC
August 2017

Limited role for transforming growth factor-β pathway activation-mediated escape from VEGF inhibition in murine glioma models.

Neuro Oncol 2016 12 10;18(12):1610-1621. Epub 2016 Jun 10.

Laboratory of Molecular Neuro-Oncology, Department of Neurology, University Hospital and University of Zurich, Zurich, Switzerland (D.M., M.W., E.S.S., K.S., G.T., H.S.); Center for Neuroscience, University of Zurich, Zurich, Switzerland (M.W., G.T.); Interdisciplinary Center for Bioinformatics, University of Leipzig, Leipzig, Germany (E.W., H.B.); Institute of Neuropathology, Heinrich Heine University, Düsseldorf, Germany (G.R.); German Cancer Consortium (DKTK), German Cancer Research Center (DKFZ) Heidelberg, partner site, Essen/Düsseldorf, Germany (G.R.).

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http://dx.doi.org/10.1093/neuonc/now112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6693192PMC
December 2016

oposSOM: R-package for high-dimensional portraying of genome-wide expression landscapes on bioconductor.

Bioinformatics 2015 Oct 10;31(19):3225-7. Epub 2015 Jun 10.

Interdisciplinary Centre for Bioinformatics, Leipzig University, Leipzig 04107, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btv342DOI Listing
October 2015

Epigenetic Heterogeneity of B-Cell Lymphoma: Chromatin Modifiers.

Genes (Basel) 2015 Oct 21;6(4):1076-112. Epub 2015 Oct 21.

Interdisciplinary Centre for Bioinformatics, Universität Leipzig, Härtelstr. 16-18, Leipzig 04107, Germany.

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http://dx.doi.org/10.3390/genes6041076DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4690029PMC
October 2015

Epigenetic Heterogeneity of B-Cell Lymphoma: DNA Methylation, Gene Expression and Chromatin States.

Genes (Basel) 2015 Sep 7;6(3):812-40. Epub 2015 Sep 7.

Interdisciplinary Centre for Bioinformatics, Universität Leipzig, Härtelstr. 16-18, 04107 Leipzig, Germany.

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http://dx.doi.org/10.3390/genes6030812DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4584331PMC
September 2015

Nimodipine enhances neurite outgrowth in dopaminergic brain slice co-cultures.

Int J Dev Neurosci 2015 Feb 4;40:1-11. Epub 2014 Nov 4.

Rudolf Boehm Institute of Pharmacology and Toxicology, University of Leipzig, Härtelstr. 16-18, 04107 Leipzig, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.ijdevneu.2014.10.005DOI Listing
February 2015

Variation of RNA Quality and Quantity Are Major Sources of Batch Effects in Microarray Expression Data.

Microarrays (Basel) 2014 Dec 16;3(4):322-39. Epub 2014 Dec 16.

Interdisciplinary Centre for Bioinformatics, Universität Leipzig, Härtelstr. 16-18, 04107 Leipzig, Germany.

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http://dx.doi.org/10.3390/microarrays3040322DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4979052PMC
December 2014

How stemlike are sphere cultures from long-term cancer cell lines? Lessons from mouse glioma models.

J Neuropathol Exp Neurol 2014 Nov;73(11):1062-77

From the Laboratory of Molecular Neuro-Oncology, Departments of Neurology (MA, PR, MW) and Neurosurgery (MA, KF); University Hospital Zurich, and Neuroscience Center (MA, KF, PR, MW), University of Zurich, Zurich, Switzerland; Interdisciplinary Institute for Bioinformatics, University of Leipzig, Leipzig, Germany (EW, HB); Molecular Proteomics Laboratory, Center for Biological and Medical Research (BMFZ) (AS, KS); Department of Neuropathology and German Cancer Consortium (DKTK), partner site Essen/Düsseldorf (KK, GR); and Institute for Molecular Medicine (KS), Heinrich Heine University, Düsseldorf, Germany.

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https://academic.oup.com/jnen/article-lookup/doi/10.1097/NEN
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http://dx.doi.org/10.1097/NEN.0000000000000130DOI Listing
November 2014

Profiling of genetic switches using boolean implications in expression data.

J Integr Bioinform 2014 Oct 15;11(1):246. Epub 2014 Oct 15.

Interdisciplinary Centre for Bioinformatics, University of Leipzig, Härtelstr. 16 - 18, 04107 Leipzig, Germany.

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http://dx.doi.org/10.2390/biecoll-jib-2014-246DOI Listing
October 2014

A systems biology approach for defining the molecular framework of the hematopoietic stem cell niche.

Cell Stem Cell 2014 Sep 17;15(3):376-391. Epub 2014 Jul 17.

Sorbonne Universités, UPMC Paris 06, IBPS, UMR 7622, Laboratoire de Biologie du Développement, 75005 Paris; CNRS, INSERM U1156, IBPS, UMR 7622, Laboratoire de Biologie du Développement, 75005 Paris, France. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2014.06.005DOI Listing
September 2014

Analysis of microRNA expression using machine learning.

Methods Mol Biol 2014 ;1107:257-78

Interdisciplinary Centre for Bioinformatics, University of Leipzig, Leipzig, Germany.

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http://dx.doi.org/10.1007/978-1-62703-748-8_16DOI Listing
July 2014

MicroRNA expression landscapes in stem cells, tissues, and cancer.

Methods Mol Biol 2014 ;1107:279-302

Interdisciplinary Centre for Bioinformatics, University of Leipzig, Leipzig, Germany.

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http://dx.doi.org/10.1007/978-1-62703-748-8_17DOI Listing
July 2014

Portraying the Expression Landscapes of B-CellLymphoma-Intuitive Detection of Outlier Samples and of Molecular Subtypes.

Biology (Basel) 2013 Dec 2;2(4):1411-37. Epub 2013 Dec 2.

Interdisciplinary Centre for Bioinformatics, Universität Leipzig, Härtelstr. 16-18, Leipzig 04107, Germany.

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http://dx.doi.org/10.3390/biology2041411DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4009791PMC
December 2013

Transcriptional regulation by histone modifications: towards a theory of chromatin re-organization during stem cell differentiation.

Phys Biol 2013 Apr 12;10(2):026006. Epub 2013 Mar 12.

Interdisciplinary Centre for Bioinformatics, University of Leipzig, D-04107 Leipzig, Härtelstr. 16-18, Germany.

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http://dx.doi.org/10.1088/1478-3975/10/2/026006DOI Listing
April 2013

A global genome segmentation method for exploration of epigenetic patterns.

PLoS One 2012 12;7(10):e46811. Epub 2012 Oct 12.

Junior Professorship for Computational EvoDevo, Institute of Computer Science, University of Leipzig, Leipzig, Germany.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0046811PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3470578PMC
March 2013

AffyRNADegradation: control and correction of RNA quality effects in GeneChip expression data.

Bioinformatics 2013 Jan 24;29(1):129-31. Epub 2012 Oct 24.

Interdisciplinary Center for Bioinformatics, Universität Leipzig, D-4107 Leipzig, Haertelstr. 16-18, Germany.

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http://dx.doi.org/10.1093/bioinformatics/bts629DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3530908PMC
January 2013

Mining SOM expression portraits: feature selection and integrating concepts of molecular function.

BioData Min 2012 Oct 8;5(1):18. Epub 2012 Oct 8.

Interdisciplinary Centre for Bioinformatics of Leipzig University, Härtelstr, 16-18, D-4107, Leipzig, Germany.

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http://dx.doi.org/10.1186/1756-0381-5-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3599960PMC
October 2012

Suitability of infrared microspectroscopic imaging for histopathology of the uterine cervix.

Histopathology 2012 Jun 28;60(7):1084-98. Epub 2012 Feb 28.

Department of Obstetrics and Gynaecology, Centre for Women's & Children's Health, Leipzig University, Liebigstrasse 20a, Leipzig, Germany.

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http://doi.wiley.com/10.1111/j.1365-2559.2011.04140.x
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http://dx.doi.org/10.1111/j.1365-2559.2011.04140.xDOI Listing
June 2012

Estimating RNA-quality using GeneChip microarrays.

BMC Genomics 2012 May 14;13:186. Epub 2012 May 14.

Interdisciplinary Center for Bioinformatics, Universität Leipzig, Haertelstr 16-18, Leipzig D-4107, Germany.

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http://dx.doi.org/10.1186/1471-2164-13-186DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3519671PMC
May 2012

Modeling the dynamic epigenome: from histone modifications towards self-organizing chromatin.

Epigenomics 2012 Apr;4(2):205-19

Interdisciplinary Centre for Bioinformatics, University Leipzig, D-04107 Leipzig, Härtelstr. 16-18, Germany.

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https://www.futuremedicine.com/doi/10.2217/epi.11.117
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http://dx.doi.org/10.2217/epi.11.117DOI Listing
April 2012

MALDI-typing of infectious algae of the genus Prototheca using SOM portraits.

J Microbiol Methods 2012 Jan 26;88(1):83-97. Epub 2011 Oct 26.

Interdisciplinary Centre for Bioinformatics of Leipzig University, D-4107, Härtelstr. 16-18, Leipzig, Germany.

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http://dx.doi.org/10.1016/j.mimet.2011.10.013DOI Listing
January 2012

DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments.

Nucleic Acids Res 2011 Jul 27;39(Web Server issue):W112-7. Epub 2011 May 27.

Interdisciplinary Center for Bioinformatics and Bioinformatics Group, Department of Computer Science, University Leipzig, Germany.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkr357DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125765PMC
July 2011

Expression cartography of human tissues using self organizing maps.

BMC Bioinformatics 2011 Jul 27;12:306. Epub 2011 Jul 27.

Interdisciplinary Centre for Bioinformatics of Leipzig University, D-4107 Leipzig, Härtelstr. 16-18, Germany.

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http://dx.doi.org/10.1186/1471-2105-12-306DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3161046PMC
July 2011

Gene expression density profiles characterize modes of genomic regulation: theory and experiment.

J Biotechnol 2010 Sep 13;149(3):98-114. Epub 2010 Feb 13.

Interdisciplinary Centre for Bioinformatics of Leipzig University, D-4107 Leipzig, Haertelstr. 16-18, Germany.

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http://dx.doi.org/10.1016/j.jbiotec.2010.02.002DOI Listing
September 2010

Washing scaling of GeneChip microarray expression.

BMC Bioinformatics 2010 May 28;11:291. Epub 2010 May 28.

Interdisciplinary Centre for Bioinformatics; Universität Leipzig, D-4107 Leipzig, Haertelstr 16-18, Germany.

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http://dx.doi.org/10.1186/1471-2105-11-291DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2901370PMC
May 2010

Calibration of microarray gene-expression data.

Methods Mol Biol 2010 ;576:375-407

Interdisciplinary Centre for Bioinformatics, University of Leipzig, Leipzig, Germany.

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http://dx.doi.org/10.1007/978-1-59745-545-9_20DOI Listing
January 2010

Physico-chemical modelling of target depletion during hybridization on oligonulceotide microarrays.

Phys Biol 2009 Dec 21;7(1):016004. Epub 2009 Dec 21.

Centre for Bioinformation Science, Mathematical Sciences Institute, Australian National University, Canberra, ACT 0200, Australia.

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http://peteranoble.com/Conference_papers/burden_2009.pdf
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http://stacks.iop.org/1478-3975/7/i=1/a=016004?key=crossref.
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http://dx.doi.org/10.1088/1478-3975/7/1/016004DOI Listing
December 2009

Identification of harmless and pathogenic algae of the genus Prototheca by MALDI-MS.

Proteomics Clin Appl 2009 Jul;3(7):774-84

Department of Proteomics, UFZ - Helmholtz-Centre for Environmental Research, Leipzig, Germany.

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http://dx.doi.org/10.1002/prca.200780138DOI Listing
July 2009

Nonspecific hybridization scaling of microarray expression estimates: a physicochemical approach for chip-to-chip normalization.

J Phys Chem B 2009 Mar;113(9):2874-95

Interdisciplinary Centre for Bioinformatics of Leipzig University, D-4107 Leipzig, Haertelstrasse 16-18, Germany.

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http://dx.doi.org/10.1021/jp808118mDOI Listing
March 2009

"Hook"-calibration of GeneChip-microarrays: chip characteristics and expression measures.

Algorithms Mol Biol 2008 Aug 29;3:11. Epub 2008 Aug 29.

Interdisciplinary Centre for Bioinformatics, University of Leipzig, D-04107 Leipzig, Germany.

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http://dx.doi.org/10.1186/1748-7188-3-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2543012PMC
August 2008

"Hook"-calibration of GeneChip-microarrays: theory and algorithm.

Algorithms Mol Biol 2008 Aug 29;3:12. Epub 2008 Aug 29.

Interdisciplinary Centre for Bioinformatics, University of Leipzig, D-04107 Leipzig, Germany.

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http://dx.doi.org/10.1186/1748-7188-3-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2546411PMC
August 2008

Water near lipid membranes as seen by infrared spectroscopy.

Authors:
Hans Binder

Eur Biophys J 2007 Apr 7;36(4-5):265-79. Epub 2006 Nov 7.

Interdisciplinary Centre for Bioinformatics, University of Leipzig, Leipzig, Germany.

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http://dx.doi.org/10.1007/s00249-006-0110-6DOI Listing
April 2007

Delimitation of squamous cell cervical carcinoma using infrared microspectroscopic imaging.

Anal Bioanal Chem 2006 Jan 3;384(1):145-54. Epub 2005 Dec 3.

Institute for Analytical Chemistry, Dresden University of Technology, 01062, Dresden, Germany.

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http://link.springer.com/10.1007/s00216-005-0124-4
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http://dx.doi.org/10.1007/s00216-005-0124-4DOI Listing
January 2006

Base pair interactions and hybridization isotherms of matched and mismatched oligonucleotide probes on microarrays.

Langmuir 2005 Sep;21(20):9287-302

Interdisciplinary Centre for Bioinformatics, University of Leipzig, Haertelstrasse 16-18, D-04107 Leipzig, Germany.

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http://pubs.acs.org/doi/abs/10.1021/la051231s
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http://dx.doi.org/10.1021/la051231sDOI Listing
September 2005

Specific and nonspecific hybridization of oligonucleotide probes on microarrays.

Biophys J 2005 Jul 15;89(1):337-52. Epub 2005 Apr 15.

Interdisciplinary Centre for Bioinformatics, University of Leipzig, Leipzig, Germany.

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http://dx.doi.org/10.1529/biophysj.104.055343DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1366534PMC
July 2005

A molecular view on the interaction of the trojan peptide penetratin with the polar interface of lipid bilayers.

Biophys J 2004 Jul;87(1):332-43

Department of Biophysical Chemistry, Umeå University, Umea, Sweden.

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http://dx.doi.org/10.1529/biophysj.103.034025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1304354PMC
July 2004

Charge-dependent translocation of the Trojan peptide penetratin across lipid membranes.

Biophys J 2003 Aug;85(2):982-95

Department of Biophysical Chemistry, Umeå University, SE-90187 Umeå, Sweden.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1303219PMC
http://dx.doi.org/10.1016/S0006-3495(03)74537-8DOI Listing
August 2003

Membrane insertion of a lipidated ras peptide studied by FTIR, solid-state NMR, and neutron diffraction spectroscopy.

J Am Chem Soc 2003 Apr;125(14):4070-9

Junior Research Group Solid-state NMR Studies of Membrane-associated Proteins, University of Leipzig, Liebigstrasse 27, D-04103 Leipzig, Germany.

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http://dx.doi.org/10.1021/ja0289245DOI Listing
April 2003

The effect of metal cations on the phase behavior and hydration characteristics of phospholipid membranes.

Chem Phys Lipids 2002 May;115(1-2):39-61

Department of Medicine, Institute of Medical Physics and Biophysics, University of Leipzig, Liebigstr. 27, Leipzig, Germany.

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http://dx.doi.org/10.1016/s0009-3084(02)00005-1DOI Listing
May 2002