Publications by authors named "Hamid Alinejad-Rokny"

14Publications

A review on deep learning approaches in healthcare systems: Taxonomies, challenges, and open issues.

J Biomed Inform 2020 Nov 28:103627. Epub 2020 Nov 28.

Systems Biology and Health Data Analytics Lab, The Graduate School of Biomedical Engineering, UNSW Sydney, 2052 Sydney, Australia; School of Computer Science and Engineering, The University of New South Wales (UNSW Sydney), 2052 Sydney, Australia; Health Data Analytics Program Leader, AI-enabled Processes (AIP) Research Centre, Macquarie University, Sydney 2109, Australia.

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November 2020

Brain-Enriched Coding and Long Non-coding RNA Genes Are Overrepresented in Recurrent Neurodevelopmental Disorder CNVs.

Cell Rep 2020 Oct;33(4):108307

Harry Perkins Institute of Medical Research, QEII Medical Centre and Centre for Medical Research, The University of Western Australia, Nedlands, 6009 WA, Australia. Electronic address:

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October 2020

Proposing a novel community detection approach to identify cointeracting genomic regions.

Math Biosci Eng 2020 01;17(3):2193-2217

Systems Biology and Health Data Analytics Lab, The Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, NSW, 2052, Australia.

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January 2020

MHiC, an integrated user-friendly tool for the identification and visualization of significant interactions in Hi-C data.

BMC Genomics 2020 Mar 12;21(1):225. Epub 2020 Mar 12.

Systems Biology and Health Data Analytics Lab, The Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, 2052, Australia.

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March 2020

CANCERSIGN: a user-friendly and robust tool for identification and classification of mutational signatures and patterns in cancer genomes.

Sci Rep 2020 Jan 28;10(1):1286. Epub 2020 Jan 28.

Systems Biology and Health Data Analytics Lab, The Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, NSW, 2052, Australia.

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January 2020

Source of CpG Depletion in the HIV-1 Genome.

Mol Biol Evol 2016 12 28;33(12):3205-3212. Epub 2016 Sep 28.

Infection Analytics, Kirby Institute, UNSW Australia, Sydney, Australia

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December 2016

High fidelity simian immunodeficiency virus reverse transcriptase mutants have impaired replication in vitro and in vivo.

Virology 2016 May 19;492:1-10. Epub 2016 Feb 19.

Department of Microbiology and Immunology, The University of Melbourne, The Peter Doherty Institute for Infection and Immunity, Victoria 3010, Australia; Melbourne Sexual Health Centre and Department of Infectious Diseases, Alfred Health, Central Clinical School, Monash University, Melbourne, Australia; ARC Centre of Excellence in Convergent Bio-Nano Science and Technology, University of Melbourne, Parkville, Australia. Electronic address:

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May 2016

A method to avoid errors associated with the analysis of hypermutated viral sequences by alignment-based methods.

J Biomed Inform 2015 Dec 19;58:220-225. Epub 2015 Oct 19.

Department of Biochemistry, Molecular Biology and Biophysics; Masonic Cancer Center; Institute for Molecular Virology; University of Minnesota, MN, USA. Electronic address:

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December 2015

Insights into the motif preference of APOBEC3 enzymes.

PLoS One 2014 31;9(1):e87679. Epub 2014 Jan 31.

Complex Systems in Biology Group, Centre for Vascular Research, Faculty of Medicine, University of New South Wales, Sydney, New South Wales, Australia.

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October 2014