Haley J Abel

Haley J Abel

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Haley J Abel

Haley J Abel

Publications by authors named "Haley J Abel"

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svtools: population-scale analysis of structural variation.

Bioinformatics 2019 Jun 20. Epub 2019 Jun 20.

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.

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http://dx.doi.org/10.1093/bioinformatics/btz492DOI Listing
June 2019

Spectrum of mutations in leiomyosarcomas identified by clinical targeted next-generation sequencing.

Exp Mol Pathol 2017 02 14;102(1):156-161. Epub 2017 Jan 14.

Department of Pathology and Immunology, Washington University, St. Louis, MO, United States. Electronic address:

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http://dx.doi.org/10.1016/j.yexmp.2017.01.012DOI Listing
February 2017

In Silico Proficiency Testing for Clinical Next-Generation Sequencing.

J Mol Diagn 2017 01 15;19(1):35-42. Epub 2016 Nov 15.

Department of Pathology, Washington University School of Medicine, St. Louis, Missouri. Electronic address:

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http://dx.doi.org/10.1016/j.jmoldx.2016.09.005DOI Listing
January 2017

A Model Study of In Silico Proficiency Testing for Clinical Next-Generation Sequencing.

Arch Pathol Lab Med 2016 Oct 7;140(10):1085-91. Epub 2016 Jul 7.

From the Departments of Pathology (Drs Duncavage and Pfeifer) and Genetics (Dr Abel), Washington University School of Medicine, St Louis, Missouri; the Department of Pathology (Dr Merker), Stanford University School of Medicine, Stanford, California; Product Development, Laboratory Improvement Program (Mr Bodner), and the Surveys Department (Dr Zhao), College of American Pathologists, Northfield, Illinois; and the Department of Pathology and ARUP Laboratories, University of Utah, Salt Lake City (Dr Voelkerding).

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http://dx.doi.org/10.5858/arpa.2016-0194-CPDOI Listing
October 2016

T-cell clonality assessment by next-generation sequencing improves detection sensitivity in mycosis fungoides.

J Am Acad Dermatol 2015 Aug 3;73(2):228-36.e2. Epub 2015 Jun 3.

Washington University School of Medicine, Saint Louis, Missouri. Electronic address:

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http://dx.doi.org/10.1016/j.jaad.2015.04.030DOI Listing
August 2015

A wide spectrum of EGFR mutations in glioblastoma is detected by a single clinical oncology targeted next-generation sequencing panel.

Exp Mol Pathol 2015 Jun 22;98(3):568-73. Epub 2015 Apr 22.

Department of Pathology and Immunology, Division of Anatomic and Molecular Pathology, Washington University School of Medicine, Saint Louis, MO, United States. Electronic address:

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http://dx.doi.org/10.1016/j.yexmp.2015.04.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4539240PMC
June 2015

Admixture mapping identifies a quantitative trait locus associated with FEV1/FVC in the COPDGene Study.

Genet Epidemiol 2014 Nov 11;38(7):652-9. Epub 2014 Aug 11.

Department of Epidemiology, Bloomberg School of Public Health, The Johns Hopkins University, Baltimore, Maryland, United States of America.

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http://dx.doi.org/10.1002/gepi.21847DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4190160PMC
November 2014

Retinoblastoma gene mutations detected by whole exome sequencing of Merkel cell carcinoma.

Mod Pathol 2014 Aug 10;27(8):1073-87. Epub 2014 Jan 10.

Department of Pathology and Immunology, Division of Anatomic and Molecular Pathology, Washington University School of Medicine, Saint Louis, MO, USA.

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http://dx.doi.org/10.1038/modpathol.2013.235DOI Listing
August 2014

Copy number variants in clinical next-generation sequencing data can define the relationship between simultaneous tumors in an individual patient.

Exp Mol Pathol 2014 Aug 2;97(1):69-73. Epub 2014 Jun 2.

Department of Pathology & Immunology, Washington University School of Medicine, St. Louis, MO 63110, USA.

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http://dx.doi.org/10.1016/j.yexmp.2014.05.008DOI Listing
August 2014

Detection of structural DNA variation from next generation sequencing data: a review of informatic approaches.

Cancer Genet 2013 Dec 20;206(12):432-40. Epub 2013 Nov 20.

Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cancergen.2013.11.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4441822PMC
December 2013

Comparison of clinical targeted next-generation sequence data from formalin-fixed and fresh-frozen tissue specimens.

J Mol Diagn 2013 Sep 26;15(5):623-33. Epub 2013 Jun 26.

Department of Pathology, Washington University School of Medicine, St. Louis, Missouri, USA.

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http://dx.doi.org/10.1016/j.jmoldx.2013.05.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4912568PMC
September 2013

Detection of FLT3 internal tandem duplication in targeted, short-read-length, next-generation sequencing data.

J Mol Diagn 2013 Jan 14;15(1):81-93. Epub 2012 Nov 14.

Division of Laboratory and Genomic Medicine, Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri, USA.

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http://dx.doi.org/10.1016/j.jmoldx.2012.08.001DOI Listing
January 2013

Shared genomic segment analysis: the power to find rare disease variants.

Ann Hum Genet 2012 Nov 19;76(6):500-9. Epub 2012 Sep 19.

Division of Genetic Epidemiology, University of Utah School of Medicine, Salt Lake City, UT 84108, USA.

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http://dx.doi.org/10.1111/j.1469-1809.2012.00728.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3879794PMC
November 2012

Targeted next generation sequencing of clinically significant gene mutations and translocations in leukemia.

Mod Pathol 2012 Jun 16;25(6):795-804. Epub 2012 Mar 16.

Department of Pathology and Immunology, Washington University, St Louis, MO 63110,USA.

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http://dx.doi.org/10.1038/modpathol.2012.29DOI Listing
June 2012

Effect of linkage disequilibrium on the identification of functional variants.

Genet Epidemiol 2011 ;35 Suppl 1:S115-9

Division of Genetic Epidemiology, University of Utah, Salt Lake City, UT 84108, USA.

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http://dx.doi.org/10.1002/gepi.20660DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3248791PMC
May 2012

Case-control association testing by graphical modeling for the Genetic Analysis Workshop 17 mini-exome sequence data.

BMC Proc 2011 Nov 29;5 Suppl 9:S62. Epub 2011 Nov 29.

Division of Genetic Epidemiology, University of Utah, 391 Chipeta Way, Salt Lake City, UT 84105, USA.

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http://bmcproc.biomedcentral.com/articles/10.1186/1753-6561-
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http://dx.doi.org/10.1186/1753-6561-5-S9-S62DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3287901PMC
November 2011

Accuracy and computational efficiency of a graphical modeling approach to linkage disequilibrium estimation.

Stat Appl Genet Mol Biol 2011 6;10:Article 5. Epub 2011 Jan 6.

University of Utah, Utah, USA.

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http://dx.doi.org/10.2202/1544-6115.1615DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3045084PMC
April 2011

SLOPE: a quick and accurate method for locating non-SNP structural variation from targeted next-generation sequence data.

Bioinformatics 2010 Nov 27;26(21):2684-8. Epub 2010 Sep 27.

Department of Internal Medicine, Division of Genetic Epidemiology, Department of Pathology, University of Utah, Salt Lake City, UT, USA.

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http://dx.doi.org/10.1093/bioinformatics/btq528DOI Listing
November 2010

Retinal pigment epithelium of the rat express CD81, the target of the anti-proliferative antibody (TAPA).

Invest Ophthalmol Vis Sci 2002 Jan;43(1):274-80

Department of Anatomy and Neurobiology, University of Tennessee Health Science Center, Memphis, Tennessee 38163, USA.

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January 2002