Haja N Kadarmideen

Haja N Kadarmideen

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Haja N Kadarmideen

Haja N Kadarmideen

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Characterisation of eQTLs associated with androstenone by RNA sequencing in porcine testis.

Physiol Genomics 2019 Aug 2. Epub 2019 Aug 2.

Department of Applied Mathematics and Computer Science, Technical University of Denmark, Denmark.

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http://dx.doi.org/10.1152/physiolgenomics.00125.2018DOI Listing
August 2019

Metabolomics Analyses in High-Low Feed Efficient Dairy Cows Reveal Novel Biochemical Mechanisms and Predictive Biomarkers.

Metabolites 2019 Jul 23;9(7). Epub 2019 Jul 23.

Quantitative Genomics, Bioinformatics and Computational Biology Group, Department of Applied Mathematics and Computer Science, Technical University of Denmark, Richard Petersens Plads, Building 324, 2800 Kongens Lyngby, Denmark.

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http://dx.doi.org/10.3390/metabo9070151DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6680417PMC
July 2019

Genomic analyses suggest adaptive differentiation of northern European native cattle breeds.

Evol Appl 2019 Jun 12;12(6):1096-1113. Epub 2019 Mar 12.

Section of Biology and Environmental Science, Department of Chemistry and Bioscience Aalborg University Aalborg Denmark.

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http://dx.doi.org/10.1111/eva.12783DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6597895PMC
June 2019

Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.

Authors:
Nicole M Warrington Robin N Beaumont Momoko Horikoshi Felix R Day Øyvind Helgeland Charles Laurin Jonas Bacelis Shouneng Peng Ke Hao Bjarke Feenstra Andrew R Wood Anubha Mahajan Jessica Tyrrell Neil R Robertson N William Rayner Zhen Qiao Gunn-Helen Moen Marc Vaudel Carmen J Marsit Jia Chen Michael Nodzenski Theresia M Schnurr Mohammad H Zafarmand Jonathan P Bradfield Niels Grarup Marjolein N Kooijman Ruifang Li-Gao Frank Geller Tarunveer S Ahluwalia Lavinia Paternoster Rico Rueedi Ville Huikari Jouke-Jan Hottenga Leo-Pekka Lyytikäinen Alana Cavadino Sarah Metrustry Diana L Cousminer Ying Wu Elisabeth Thiering Carol A Wang Christian T Have Natalia Vilor-Tejedor Peter K Joshi Jodie N Painter Ioanna Ntalla Ronny Myhre Niina Pitkänen Elisabeth M van Leeuwen Raimo Joro Vasiliki Lagou Rebecca C Richmond Ana Espinosa Sheila J Barton Hazel M Inskip John W Holloway Loreto Santa-Marina Xavier Estivill Wei Ang Julie A Marsh Christoph Reichetzeder Letizia Marullo Berthold Hocher Kathryn L Lunetta Joanne M Murabito Caroline L Relton Manolis Kogevinas Leda Chatzi Catherine Allard Luigi Bouchard Marie-France Hivert Ge Zhang Louis J Muglia Jani Heikkinen Camilla S Morgen Antoine H C van Kampen Barbera D C van Schaik Frank D Mentch Claudia Langenberg Jian'an Luan Robert A Scott Jing Hua Zhao Gibran Hemani Susan M Ring Amanda J Bennett Kyle J Gaulton Juan Fernandez-Tajes Natalie R van Zuydam Carolina Medina-Gomez Hugoline G de Haan Frits R Rosendaal Zoltán Kutalik Pedro Marques-Vidal Shikta Das Gonneke Willemsen Hamdi Mbarek Martina Müller-Nurasyid Marie Standl Emil V R Appel Cilius E Fonvig Caecilie Trier Catharina E M van Beijsterveldt Mario Murcia Mariona Bustamante Sílvia Bonas-Guarch David M Hougaard Josep M Mercader Allan Linneberg Katharina E Schraut Penelope A Lind Sarah E Medland Beverley M Shields Bridget A Knight Jin-Fang Chai Kalliope Panoutsopoulou Meike Bartels Friman Sánchez Jakob Stokholm David Torrents Rebecca K Vinding Sara M Willems Mustafa Atalay Bo L Chawes Peter Kovacs Inga Prokopenko Marcus A Tuke Hanieh Yaghootkar Katherine S Ruth Samuel E Jones Po-Ru Loh Anna Murray Michael N Weedon Anke Tönjes Michael Stumvoll Kim F Michaelsen Aino-Maija Eloranta Timo A Lakka Cornelia M van Duijn Wieland Kiess Antje Körner Harri Niinikoski Katja Pahkala Olli T Raitakari Bo Jacobsson Eleftheria Zeggini George V Dedoussis Yik-Ying Teo Seang-Mei Saw Grant W Montgomery Harry Campbell James F Wilson Tanja G M Vrijkotte Martine Vrijheid Eco J C N de Geus M Geoffrey Hayes Haja N Kadarmideen Jens-Christian Holm Lawrence J Beilin Craig E Pennell Joachim Heinrich Linda S Adair Judith B Borja Karen L Mohlke Johan G Eriksson Elisabeth E Widén Andrew T Hattersley Tim D Spector Mika Kähönen Jorma S Viikari Terho Lehtimäki Dorret I Boomsma Sylvain Sebert Peter Vollenweider Thorkild I A Sørensen Hans Bisgaard Klaus Bønnelykke Jeffrey C Murray Mads Melbye Ellen A Nohr Dennis O Mook-Kanamori Fernando Rivadeneira Albert Hofman Janine F Felix Vincent W V Jaddoe Torben Hansen Charlotta Pisinger Allan A Vaag Oluf Pedersen André G Uitterlinden Marjo-Riitta Järvelin Christine Power Elina Hyppönen Denise M Scholtens William L Lowe George Davey Smith Nicholas J Timpson Andrew P Morris Nicholas J Wareham Hakon Hakonarson Struan F A Grant Timothy M Frayling Debbie A Lawlor Pål R Njølstad Stefan Johansson Ken K Ong Mark I McCarthy John R B Perry David M Evans Rachel M Freathy

Nat Genet 2019 05 1;51(5):804-814. Epub 2019 May 1.

Institute of Biomedical and Clinical Science, College of Medicine and Health, University of Exeter, Royal Devon and Exeter Hospital, Exeter, UK.

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http://dx.doi.org/10.1038/s41588-019-0403-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6522365PMC
May 2019

An Epigenome-Wide DNA Methylation Map of Testis in Pigs for Study of Complex Traits.

Front Genet 2019 30;10:405. Epub 2019 Apr 30.

Quantitative Genomics, Bioinformatics and Computational Biology Group, Department of Applied Mathematics and Computer Science, Technical University of Denmark, Kongens Lyngby, Denmark.

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http://dx.doi.org/10.3389/fgene.2019.00405DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6502962PMC
April 2019

Simulated physiological oocyte maturation has side effects on bovine oocytes and embryos.

J Assist Reprod Genet 2019 Mar 16;36(3):413-424. Epub 2018 Nov 16.

Department of Veterinary and Animal Sciences, University of Copenhagen, Frederiksberg C, Denmark.

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http://dx.doi.org/10.1007/s10815-018-1365-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6439068PMC
March 2019

Improving genomic predictions by correction of genotypes from genotyping by sequencing in livestock populations.

J Anim Sci Biotechnol 2019 24;10. Epub 2019 Jan 24.

1Center for Quantitative Genetics and Genomics, Department of Molecular Biology and Genetics, Aarhus University, Tjele, Denmark.

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http://dx.doi.org/10.1186/s40104-019-0315-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6350319PMC
January 2019

WISH-R- a fast and efficient tool for construction of epistatic networks for complex traits and diseases.

BMC Bioinformatics 2018 07 31;19(1):277. Epub 2018 Jul 31.

Quantitative and Systems Genomics Group, Department of Bio and Health Informatics, Technical University of Denmark, Kemitorvet, Building 208, 2800, Kgs. Lyngby, Denmark.

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http://dx.doi.org/10.1186/s12859-018-2291-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6069724PMC
July 2018

Transcription Factor Co-expression Networks of Adipose RNA-Seq Data Reveal Regulatory Mechanisms of Obesity.

Curr Genomics 2018 May;19(4):289-299

Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Grønnegårdsvej 7, 1870 Frederiksberg C, Denmark.

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http://dx.doi.org/10.2174/1389202918666171005095059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5930450PMC
May 2018

Systems genomics study reveals expression quantitative trait loci, regulator genes and pathways associated with boar taint in pigs.

PLoS One 2018 13;13(2):e0192673. Epub 2018 Feb 13.

Section of Anatomy, Biochemistry and Physiology, Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg C, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0192673PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5811030PMC
April 2018

Differential expression and co-expression gene networks reveal candidate biomarkers of boar taint in non-castrated pigs.

Sci Rep 2017 09 22;7(1):12205. Epub 2017 Sep 22.

Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Grønnegårdsvej 7, Frederiksberg C, 1870, Denmark.

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http://dx.doi.org/10.1038/s41598-017-11928-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5610188PMC
September 2017

Single nucleotide polymorphism discovery in bovine liver using RNA-seq technology.

PLoS One 2017 24;12(2):e0172687. Epub 2017 Feb 24.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway Township, NJ, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0172687PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5325534PMC
August 2017

Inter-Tissue Gene Co-Expression Networks between Metabolically Healthy and Unhealthy Obese Individuals.

PLoS One 2016 1;11(12):e0167519. Epub 2016 Dec 1.

Department of Large Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0167519PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5132173PMC
June 2017

Genome-wide associations for birth weight and correlations with adult disease.

Authors:
Momoko Horikoshi Robin N Beaumont Felix R Day Nicole M Warrington Marjolein N Kooijman Juan Fernandez-Tajes Bjarke Feenstra Natalie R van Zuydam Kyle J Gaulton Niels Grarup Jonathan P Bradfield David P Strachan Ruifang Li-Gao Tarunveer S Ahluwalia Eskil Kreiner Rico Rueedi Leo-Pekka Lyytikäinen Diana L Cousminer Ying Wu Elisabeth Thiering Carol A Wang Christian T Have Jouke-Jan Hottenga Natalia Vilor-Tejedor Peter K Joshi Eileen Tai Hui Boh Ioanna Ntalla Niina Pitkänen Anubha Mahajan Elisabeth M van Leeuwen Raimo Joro Vasiliki Lagou Michael Nodzenski Louise A Diver Krina T Zondervan Mariona Bustamante Pedro Marques-Vidal Josep M Mercader Amanda J Bennett Nilufer Rahmioglu Dale R Nyholt Ronald Ching Wan Ma Claudia Ha Ting Tam Wing Hung Tam Santhi K Ganesh Frank Ja van Rooij Samuel E Jones Po-Ru Loh Katherine S Ruth Marcus A Tuke Jessica Tyrrell Andrew R Wood Hanieh Yaghootkar Denise M Scholtens Lavinia Paternoster Inga Prokopenko Peter Kovacs Mustafa Atalay Sara M Willems Kalliope Panoutsopoulou Xu Wang Lisbeth Carstensen Frank Geller Katharina E Schraut Mario Murcia Catharina Em van Beijsterveldt Gonneke Willemsen Emil V R Appel Cilius E Fonvig Caecilie Trier Carla Mt Tiesler Marie Standl Zoltán Kutalik Sílvia Bonas-Guarch David M Hougaard Friman Sánchez David Torrents Johannes Waage Mads V Hollegaard Hugoline G de Haan Frits R Rosendaal Carolina Medina-Gomez Susan M Ring Gibran Hemani George McMahon Neil R Robertson Christopher J Groves Claudia Langenberg Jian'an Luan Robert A Scott Jing Hua Zhao Frank D Mentch Scott M MacKenzie Rebecca M Reynolds William L Lowe Anke Tönjes Michael Stumvoll Virpi Lindi Timo A Lakka Cornelia M van Duijn Wieland Kiess Antje Körner Thorkild Ia Sørensen Harri Niinikoski Katja Pahkala Olli T Raitakari Eleftheria Zeggini George V Dedoussis Yik-Ying Teo Seang-Mei Saw Mads Melbye Harry Campbell James F Wilson Martine Vrijheid Eco Jcn de Geus Dorret I Boomsma Haja N Kadarmideen Jens-Christian Holm Torben Hansen Sylvain Sebert Andrew T Hattersley Lawrence J Beilin John P Newnham Craig E Pennell Joachim Heinrich Linda S Adair Judith B Borja Karen L Mohlke Johan G Eriksson Elisabeth E Widén Mika Kähönen Jorma S Viikari Terho Lehtimäki Peter Vollenweider Klaus Bønnelykke Hans Bisgaard Dennis O Mook-Kanamori Albert Hofman Fernando Rivadeneira André G Uitterlinden Charlotta Pisinger Oluf Pedersen Christine Power Elina Hyppönen Nicholas J Wareham Hakon Hakonarson Eleanor Davies Brian R Walker Vincent Wv Jaddoe Marjo-Riitta Jarvelin Struan Fa Grant Allan A Vaag Debbie A Lawlor Timothy M Frayling George Davey Smith Andrew P Morris Ken K Ong Janine F Felix Nicholas J Timpson John Rb Perry David M Evans Mark I McCarthy Rachel M Freathy

Nature 2016 10 28;538(7624):248-252. Epub 2016 Sep 28.

Institute of Biomedical and Clinical Science, University of Exeter Medical School, Royal Devon and Exeter Hospital, Exeter, UK.

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http://dx.doi.org/10.1038/nature19806DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5164934PMC
October 2016

Erratum to: Liver transcriptomic networks reveal main biological processes associated with feed efficiency in beef cattle.

BMC Genomics 2016 Apr 28;17:311. Epub 2016 Apr 28.

Department of Veterinary Medicine, School of Animal Science and Food Engineering, University of Sao Paulo, Av. Duque de Caxias Norte, 225, Pirassununga, São Paulo, 13635-900, Brazil.

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http://dx.doi.org/10.1186/s12864-016-2649-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4850647PMC
April 2016

Multi-omic data integration and analysis using systems genomics approaches: methods and applications in animal production, health and welfare.

Genet Sel Evol 2016 04 29;48(1):38. Epub 2016 Apr 29.

Department of Large Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Grønnegårdsvej 7, 1870, Frederiksberg C, Denmark.

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http://dx.doi.org/10.1186/s12711-016-0217-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4850674PMC
April 2016

Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.

Authors:
Janine F Felix Jonathan P Bradfield Claire Monnereau Ralf J P van der Valk Evie Stergiakouli Alessandra Chesi Romy Gaillard Bjarke Feenstra Elisabeth Thiering Eskil Kreiner-Møller Anubha Mahajan Niina Pitkänen Raimo Joro Alana Cavadino Ville Huikari Steve Franks Maria M Groen-Blokhuis Diana L Cousminer Julie A Marsh Terho Lehtimäki John A Curtin Jesus Vioque Tarunveer S Ahluwalia Ronny Myhre Thomas S Price Natalia Vilor-Tejedor Loïc Yengo Niels Grarup Ioanna Ntalla Wei Ang Mustafa Atalay Hans Bisgaard Alexandra I Blakemore Amelie Bonnefond Lisbeth Carstensen Johan Eriksson Claudia Flexeder Lude Franke Frank Geller Mandy Geserick Anna-Liisa Hartikainen Claire M A Haworth Joel N Hirschhorn Albert Hofman Jens-Christian Holm Momoko Horikoshi Jouke Jan Hottenga Jinyan Huang Haja N Kadarmideen Mika Kähönen Wieland Kiess Hanna-Maaria Lakka Timo A Lakka Alexandra M Lewin Liming Liang Leo-Pekka Lyytikäinen Baoshan Ma Per Magnus Shana E McCormack George McMahon Frank D Mentch Christel M Middeldorp Clare S Murray Katja Pahkala Tune H Pers Roland Pfäffle Dirkje S Postma Christine Power Angela Simpson Verena Sengpiel Carla M T Tiesler Maties Torrent André G Uitterlinden Joyce B van Meurs Rebecca Vinding Johannes Waage Jane Wardle Eleftheria Zeggini Babette S Zemel George V Dedoussis Oluf Pedersen Philippe Froguel Jordi Sunyer Robert Plomin Bo Jacobsson Torben Hansen Juan R Gonzalez Adnan Custovic Olli T Raitakari Craig E Pennell Elisabeth Widén Dorret I Boomsma Gerard H Koppelman Sylvain Sebert Marjo-Riitta Järvelin Elina Hyppönen Mark I McCarthy Virpi Lindi Niinikoski Harri Antje Körner Klaus Bønnelykke Joachim Heinrich Mads Melbye Fernando Rivadeneira Hakon Hakonarson Susan M Ring George Davey Smith Thorkild I A Sørensen Nicholas J Timpson Struan F A Grant Vincent W V Jaddoe

Hum Mol Genet 2016 Jan 24;25(2):389-403. Epub 2015 Nov 24.

The Generation R Study Group, Department of Pediatrics, Department of Epidemiology.

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http://hmg.oxfordjournals.org/content/early/2015/12/16/hmg.d
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http://www.hmg.oxfordjournals.org/lookup/doi/10.1093/hmg/ddv
Publisher Site
http://dx.doi.org/10.1093/hmg/ddv472DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4854022PMC
January 2016

Liver transcriptomic networks reveal main biological processes associated with feed efficiency in beef cattle.

BMC Genomics 2015 Dec 18;16:1073. Epub 2015 Dec 18.

Department of Veterinary Medicine, School of Animal Science and Food Engineering, University of Sao Paulo, Av. Duque de Caxias Norte, 225, Pirassununga, São Paulo, 13635-900, Brazil.

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http://dx.doi.org/10.1186/s12864-015-2292-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4683712PMC
December 2015

An integrative systems genetics approach reveals potential causal genes and pathways related to obesity.

Genome Med 2015 Oct 20;7:105. Epub 2015 Oct 20.

Department of Veterinary Clinical and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Grønnegårdsvej 7, 1870, Frederiksberg C, Denmark.

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http://dx.doi.org/10.1186/s13073-015-0229-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617184PMC
October 2015

Potential role of lncRNA cyp2c91-protein interactions on diseases of the immune system.

Front Genet 2015 28;6:255. Epub 2015 Jul 28.

Department of Veterinary Clinical and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg Denmark.

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http://dx.doi.org/10.3389/fgene.2015.00255DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4516971PMC
August 2015

Genome-wide association and pathway analysis of feed efficiency in pigs reveal candidate genes and pathways for residual feed intake.

Front Genet 2014 9;5:307. Epub 2014 Sep 9.

Section of Animal Genetics, Bioinformatics and Breeding, Department of Veterinary Clinical and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen Frederiksberg, Denmark.

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http://dx.doi.org/10.3389/fgene.2014.00307DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4159030PMC
September 2014

Identification of co-expression gene networks, regulatory genes and pathways for obesity based on adipose tissue RNA Sequencing in a porcine model.

BMC Med Genomics 2014 Sep 30;7:57. Epub 2014 Sep 30.

Department of Veterinary Clinical and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Grønnegårdsvej 7, 1870, Frederiksberg, Denmark.

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http://dx.doi.org/10.1186/1755-8794-7-57DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4183073PMC
September 2014

Systems genetics of obesity in an F2 pig model by genome-wide association, genetic network, and pathway analyses.

Front Genet 2014 9;5:214. Epub 2014 Jul 9.

Animal Genetics, Bioinformatics and Breeding Section, Department of Veterinary Clinical and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen Copenhagen, Denmark.

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http://journal.frontiersin.org/article/10.3389/fgene.2014.00
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http://dx.doi.org/10.3389/fgene.2014.00214DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4087325PMC
July 2014

Genome-wide association study reveals genetic architecture of eating behavior in pigs and its implications for humans obesity by comparative mapping.

PLoS One 2013 19;8(8):e71509. Epub 2013 Aug 19.

Department of Veterinary Clinical and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0071509PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3747221PMC
April 2014

Genome-wide association and systems genetic analyses of residual feed intake, daily feed consumption, backfat and weight gain in pigs.

BMC Genet 2014 Feb 17;15:27. Epub 2014 Feb 17.

Section of Animal Genetics, Bioinformatics and Breeding, Department of Veterinary Clinical and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, 1870 Frederiksberg C, Denmark.

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http://dx.doi.org/10.1186/1471-2156-15-27DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3929553PMC
February 2014

Building gene co-expression networks using transcriptomics data for systems biology investigations: Comparison of methods using microarray data.

Bioinformation 2012 21;8(18):855-61. Epub 2012 Sep 21.

Department of Veterinary Clinical and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, 1870 Frederiksberg C, Copenhagen, Denmark ; Authors contributed equally.

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http://dx.doi.org/10.6026/97320630008855DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3489090PMC
November 2012

Genetic parameters of infectious bovine keratoconjunctivitis and its relationship with weight and parasite infestations in Australian tropical Bos taurus cattle.

Genet Sel Evol 2012 Jul 27;44:22. Epub 2012 Jul 27.

ReproGen – Animal Bioscience Group, Faculty of Veterinary Science, University of Sydney, Camden, NSW 2570, Australia.

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http://dx.doi.org/10.1186/1297-9686-44-22DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3517348PMC
July 2012

Genetic architecture of gene expression in ovine skeletal muscle.

BMC Genomics 2011 Dec 15;12:607. Epub 2011 Dec 15.

CSIRO Livestock Industries, ATSIP, PMB CSIRO Aitkenvale, Townsville, QLD 4814, Australia.

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http://dx.doi.org/10.1186/1471-2164-12-607DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3265547PMC
December 2011

Systems biology of ovine intestinal parasite resistance: disease gene modules and biomarkers.

Mol Biosyst 2011 Jan 11;7(1):235-46. Epub 2010 Nov 11.

Commonwealth Scientific and Industrial Research Organisation, Livestock Industries, Davies Laboratory, PMB PO Aitkenvale, Townsville, QLD 4814, Australia.

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http://dx.doi.org/10.1039/c0mb00190bDOI Listing
January 2011

Evolutionary process of Bos taurus cattle in favourable versus unfavourable environments and its implications for genetic selection.

Evol Appl 2010 Sep;3(5-6):422-33

Systems Genetics, CSIRO Livestock Industries; and Sustainable Agricultural Flagship Davies Laboratory, Townsville, Qld, Australia.

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http://dx.doi.org/10.1111/j.1752-4571.2010.00151.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3352504PMC
September 2010

FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases.

BMC Bioinformatics 2010 Jun 9;11:311. Epub 2010 Jun 9.

CSIRO Livestock Industries, Davies Laboratory, University Drive, Townsville, QLD 4810, Australia.

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http://dx.doi.org/10.1186/1471-2105-11-311DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2901372PMC
June 2010

PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches.

Bioinformatics 2010 Feb 9;26(3):411-3. Epub 2009 Dec 9.

CSIRO Livestock Industries, Queensland Bioscience Precinct, St Lucia, QLD 4067, Australia.

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http://dx.doi.org/10.1093/bioinformatics/btp674DOI Listing
February 2010

Biochemical, ECF18R, and RYR1 gene polymorphisms and their associations with osteochondral diseases and production traits in pigs.

Biochem Genet 2008 Feb 18;46(1-2):41-53. Epub 2007 Oct 18.

Institute of Animal Science, Swiss Federal Institute of Technology, ETH Zentrum, Zurich, Switzerland.

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http://dx.doi.org/10.1007/s10528-007-9127-5DOI Listing
February 2008

Prediction of transcription factor binding sites using genetical genomics methods.

J Bioinform Comput Biol 2007 Jun;5(3):773-93

Institute of Animal Science, ETH Zurich, Universitätsstrasse 65, CH-8092 Zurich, Switzerland.

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June 2007

Population and systems genetics analyses of cortisol in pigs divergently selected for stress.

Physiol Genomics 2007 Mar 28;29(1):57-65. Epub 2006 Nov 28.

Institute of Animal Sciences, Swiss Federal Institute of Technology, ETH-Zentrum, Zurich, Switzerland.

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http://dx.doi.org/10.1152/physiolgenomics.00144.2006DOI Listing
March 2007

Investigation of major gene for milk yield, milking speed, dry matter intake, and body weight in dairy cattle.

J Appl Genet 2006 ;47(4):337-43

Statistical Animal Genetics Group, Institute of Animal Sciences, ETH Zürich, Universitätstrasse 65 CH 8092 Zurich, Switzerland.

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http://dx.doi.org/10.1007/BF03194643DOI Listing
February 2007

Gene-environment interactions in complex diseases: genetic models and methods for QTL mapping in multiple half-sib populations.

Genet Res 2006 Oct 15;88(2):119-31. Epub 2006 Sep 15.

Statistical Animal Genetics Group, Institute of Animal Science, Swiss Federal Institute of Technology, ETH Zentrum (UNS D7), Universitaetstrasse 65, Zurich 8092, Switzerland.

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http://dx.doi.org/10.1017/S0016672306008391DOI Listing
October 2006

From genetical genomics to systems genetics: potential applications in quantitative genomics and animal breeding.

Mamm Genome 2006 Jun 12;17(6):548-64. Epub 2006 Jun 12.

Statistical Animal Genetics Group, Institute of Animal Science, Swiss Federal Institute of Technology, ETH Zentrum (UNS D7), Universitaetstrasse 65, CH 8092 Zürich, Switzerland.

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http://dx.doi.org/10.1007/s00335-005-0169-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3906707PMC
June 2006

Evidence of a major gene from Bayesian segregation analyses of liability to osteochondral diseases in pigs.

Genetics 2005 Nov 14;171(3):1195-206. Epub 2005 Jul 14.

Animal Sciences Group, Wageningen University and Research Centre, 8200 AB Lelystad, The Netherlands.

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http://dx.doi.org/10.1534/genetics.105.040956DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1456822PMC
November 2005

Bayesian segregation analysis of milk flow in Swiss dairy cattle using Gibbs sampling.

Genet Sel Evol 2004 Sep-Oct;36(5):563-76

Statistical Animal Genetics Group, Institute of Animal Sciences, Swiss Federal Institute of Technology, ETH-Zentrum, Universitätsstrasse 65, 8092 Zurich, Switzerland.

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http://dx.doi.org/10.1051/gse:2004017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2697193PMC
March 2005