Hagen Tilgner

Hagen Tilgner

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Hagen Tilgner

Hagen Tilgner

Publications by authors named "Hagen Tilgner"

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23Publications

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Getting the Entire Message: Progress in Isoform Sequencing.

Front Genet 2019 16;10:709. Epub 2019 Aug 16.

Brain and Mind Research Institute, Weill Cornell Medicine, NY, United States.

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http://dx.doi.org/10.3389/fgene.2019.00709DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6706457PMC
August 2019

SynGO: An Evidence-Based, Expert-Curated Knowledge Base for the Synapse.

Neuron 2019 07 3;103(2):217-234.e4. Epub 2019 Jun 3.

Department of Functional Genomics, CNCR, VU University and UMC Amsterdam, 1081 HV Amsterdam, the Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.neuron.2019.05.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6764089PMC
July 2019

The tech for the next decade: promises and challenges in genome biology.

Genome Biol 2019 04 30;20(1):86. Epub 2019 Apr 30.

Center for Neurogenetics, Brain and Mind Research Institute (BMRI), Weill Cornell Medicine of Cornell University, New York City, NY, 10021, USA.

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http://dx.doi.org/10.1186/s13059-019-1695-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6492373PMC
April 2019

Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells.

Nat Biotechnol 2018 Oct 15. Epub 2018 Oct 15.

Brain and Mind Research Institute and Center for Neurogenetics, Weill Cornell Medicine, New York, New York, USA.

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http://www.nature.com/doifinder/10.1038/nbt.4259
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http://dx.doi.org/10.1038/nbt.4259DOI Listing
October 2018

Microfluidic isoform sequencing shows widespread splicing coordination in the human transcriptome.

Genome Res 2018 02 1;28(2):231-242. Epub 2017 Dec 1.

Department of Genetics, Stanford University, Stanford, California 94304, USA.

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http://dx.doi.org/10.1101/gr.230516.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5793787PMC
February 2018

Erratum to: Promoter-like epigenetic signatures in exons displaying cell type-specific splicing.

Genome Biol 2016 Mar 18;17:52. Epub 2016 Mar 18.

Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader, 88, Barcelona, 08003, Catalonia, Spain.

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http://dx.doi.org/10.1186/s13059-016-0890-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4799591PMC
March 2016

Absence of canonical marks of active chromatin in developmentally regulated genes.

Nat Genet 2015 Oct 17;47(10):1158-1167. Epub 2015 Aug 17.

Centre for Genomic Regulation. Barcelona, Catalonia, Spain.

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http://dx.doi.org/10.1038/ng.3381DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4625605PMC
October 2015

Promoter-like epigenetic signatures in exons displaying cell type-specific splicing.

Genome Biol 2015 Oct 23;16:236. Epub 2015 Oct 23.

Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader, 88, 08003, Barcelona, Catalonia, Spain.

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http://dx.doi.org/10.1186/s13059-015-0797-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4619081PMC
October 2015

Role of six single nucleotide polymorphisms, risk factors in coronary disease, in OLR1 alternative splicing.

RNA 2015 Jun 22;21(6):1187-202. Epub 2015 Apr 22.

Centre de Regulació Genòmica, 08003 Barcelona, Spain Universitat Pompeu Fabra, 08003 Barcelona, Spain Institució Catalana de Recerca i Estudis Avançats, 08020 Barcelona, Spain.

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http://dx.doi.org/10.1261/rna.049890.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4436670PMC
June 2015

Defining a personal, allele-specific, and single-molecule long-read transcriptome.

Proc Natl Acad Sci U S A 2014 Jul 24;111(27):9869-74. Epub 2014 Jun 24.

Department of Genetics, Stanford University, Stanford, CA 94305-5120; and

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http://www.pnas.org/lookup/doi/10.1073/pnas.1400447111
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http://dx.doi.org/10.1073/pnas.1400447111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103364PMC
July 2014

A single-molecule long-read survey of the human transcriptome.

Nat Biotechnol 2013 Nov 13;31(11):1009-14. Epub 2013 Oct 13.

1] Department of Genetics, Stanford University, Stanford, California, USA. [2] Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, USA. [3].

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http://www.nature.com/articles/nbt.2705
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http://dx.doi.org/10.1038/nbt.2705DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4075632PMC
November 2013

Accurate identification and analysis of human mRNA isoforms using deep long read sequencing.

G3 (Bethesda) 2013 Mar 1;3(3):387-97. Epub 2013 Mar 1.

Department of Genetics, Stanford University, Stanford, California 94305, USA.

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http://dx.doi.org/10.1534/g3.112.004812DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3583448PMC
March 2013

Landscape of transcription in human cells.

Nature 2012 Sep;489(7414):101-8

Centre for Genomic Regulation and UPF, Doctor Aiguader 88, Barcelona 08003, Catalonia, Spain.

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http://dx.doi.org/10.1038/nature11233DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3684276PMC
September 2012

Interplay between BRCA1 and RHAMM regulates epithelial apicobasal polarization and may influence risk of breast cancer.

Authors:
Christopher A Maxwell Javier Benítez Laia Gómez-Baldó Ana Osorio Núria Bonifaci Ricardo Fernández-Ramires Sylvain V Costes Elisabet Guinó Helen Chen Gareth J R Evans Pooja Mohan Isabel Català Anna Petit Helena Aguilar Alberto Villanueva Alvaro Aytes Jordi Serra-Musach Gad Rennert Flavio Lejbkowicz Paolo Peterlongo Siranoush Manoukian Bernard Peissel Carla B Ripamonti Bernardo Bonanni Alessandra Viel Anna Allavena Loris Bernard Paolo Radice Eitan Friedman Bella Kaufman Yael Laitman Maya Dubrovsky Roni Milgrom Anna Jakubowska Cezary Cybulski Bohdan Gorski Katarzyna Jaworska Katarzyna Durda Grzegorz Sukiennicki Jan Lubiński Yin Yao Shugart Susan M Domchek Richard Letrero Barbara L Weber Frans B L Hogervorst Matti A Rookus J Margriet Collee Peter Devilee Marjolijn J Ligtenberg Rob B van der Luijt Cora M Aalfs Quinten Waisfisz Juul Wijnen Cornelis E P van Roozendaal Douglas F Easton Susan Peock Margaret Cook Clare Oliver Debra Frost Patricia Harrington D Gareth Evans Fiona Lalloo Rosalind Eeles Louise Izatt Carol Chu Diana Eccles Fiona Douglas Carole Brewer Heli Nevanlinna Tuomas Heikkinen Fergus J Couch Noralane M Lindor Xianshu Wang Andrew K Godwin Maria A Caligo Grazia Lombardi Niklas Loman Per Karlsson Hans Ehrencrona Anna von Wachenfeldt Rosa Bjork Barkardottir Ute Hamann Muhammad U Rashid Adriana Lasa Trinidad Caldés Raquel Andrés Michael Schmitt Volker Assmann Kristen Stevens Kenneth Offit João Curado Hagen Tilgner Roderic Guigó Gemma Aiza Joan Brunet Joan Castellsagué Griselda Martrat Ander Urruticoechea Ignacio Blanco Laima Tihomirova David E Goldgar Saundra Buys Esther M John Alexander Miron Melissa Southey Mary B Daly Rita K Schmutzler Barbara Wappenschmidt Alfons Meindl Norbert Arnold Helmut Deissler Raymonda Varon-Mateeva Christian Sutter Dieter Niederacher Evgeny Imyamitov Olga M Sinilnikova Dominique Stoppa-Lyonne Sylvie Mazoyer Carole Verny-Pierre Laurent Castera Antoine de Pauw Yves-Jean Bignon Nancy Uhrhammer Jean-Philippe Peyrat Philippe Vennin Sandra Fert Ferrer Marie-Agnès Collonge-Rame Isabelle Mortemousque Amanda B Spurdle Jonathan Beesley Xiaoqing Chen Sue Healey Mary Helen Barcellos-Hoff Marc Vidal Stephen B Gruber Conxi Lázaro Gabriel Capellá Lesley McGuffog Katherine L Nathanson Antonis C Antoniou Georgia Chenevix-Trench Markus C Fleisch Víctor Moreno Miguel Angel Pujana

PLoS Biol 2011 Nov 15;9(11):e1001199. Epub 2011 Nov 15.

Translational Research Laboratory, Catalan Institute of Oncology, Bellvitge Biomedical Research Institute-IDIBELL, L'Hospitalet, Catalonia, Spain.

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http://dx.doi.org/10.1371/journal.pbio.1001199DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3217025PMC
November 2011

From chromatin to splicing: RNA-processing as a total artwork.

Epigenetics 2010 Apr 1;5(3):180-4. Epub 2010 Apr 1.

Universitat Pompeu Fabra.

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http://dx.doi.org/10.4161/epi.5.3.11319DOI Listing
April 2010

Nucleosome positioning as a determinant of exon recognition.

Nat Struct Mol Biol 2009 Sep;16(9):996-1001

Center for Genomic Regulation, Universitat Pompeu Fabra, Barcelona, Catalonia, Spain.

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http://dx.doi.org/10.1038/nsmb.1658DOI Listing
September 2009