Gwo-Yu Chuang

Gwo-Yu Chuang

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Gwo-Yu Chuang

Gwo-Yu Chuang

Publications by authors named "Gwo-Yu Chuang"

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73Publications

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BCrystal: an interpretable sequence-based protein crystallization predictor.

Bioinformatics 2020 Mar;36(5):1429-1438

Data Analytics, Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha 34110, Qatar.

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http://dx.doi.org/10.1093/bioinformatics/btz762DOI Listing
March 2020

Accurate Prediction for Antibody Resistance of Clinical HIV-1 Isolates.

Sci Rep 2019 Oct 11;9(1):14696. Epub 2019 Oct 11.

Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, 20892, MD, USA.

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http://dx.doi.org/10.1038/s41598-019-50635-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6789020PMC
October 2019

Endothelial Targeted Strategies to Combat Oxidative Stress: Improving Outcomes in Traumatic Brain Injury.

Front Neurol 2019 6;10:582. Epub 2019 Jun 6.

Department of Pathology and Laboratory Medicine, Lewis Katz School of Medicine at Temple University, Philadelphia, PA, United States.

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http://dx.doi.org/10.3389/fneur.2019.00582DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6593265PMC
June 2019

Longitudinal Analysis Reveals Early Development of Three MPER-Directed Neutralizing Antibody Lineages from an HIV-1-Infected Individual.

Immunity 2019 03 12;50(3):677-691.e13. Epub 2019 Mar 12.

Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10747613193007
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http://dx.doi.org/10.1016/j.immuni.2019.02.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6555550PMC
March 2019

Iterative screen optimization maximizes the efficiency of macromolecular crystallization.

Acta Crystallogr F Struct Biol Commun 2019 Feb 24;75(Pt 2):123-131. Epub 2019 Jan 24.

Department of Biochemistry and Cell Biology, Geisel School of Medicine at Dartmouth, Hanover, NH 03755, USA.

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http://dx.doi.org/10.1107/S2053230X18017338DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6360444PMC
February 2019

Structural Survey of Broadly Neutralizing Antibodies Targeting the HIV-1 Env Trimer Delineates Epitope Categories and Characteristics of Recognition.

Structure 2019 01 21;27(1):196-206.e6. Epub 2018 Nov 21.

Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA; Department of Biochemistry and Molecular Biophysics & Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10032, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S09692126183036
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http://dx.doi.org/10.1016/j.str.2018.10.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6664815PMC
January 2019

CRISPro: An Automated Pipeline for Protein Conformation Stabilization by Proline.

J Chem Inf Model 2018 11 19;58(11):2189-2192. Epub 2018 Oct 19.

Vaccine Research Center, National Institute of Allergy and Infectious Diseases , National Institutes of Health , Bethesda , Maryland 20892 , United States.

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http://pubs.acs.org/doi/10.1021/acs.jcim.8b00592
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http://dx.doi.org/10.1021/acs.jcim.8b00592DOI Listing
November 2018

DeepSol: a deep learning framework for sequence-based protein solubility prediction.

Bioinformatics 2018 08;34(15):2605-2613

Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha, Qatar.

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http://dx.doi.org/10.1093/bioinformatics/bty166DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6355112PMC
August 2018

Complete functional mapping of infection- and vaccine-elicited antibodies against the fusion peptide of HIV.

PLoS Pathog 2018 07 5;14(7):e1007159. Epub 2018 Jul 5.

Basic Sciences Division and Computational Biology Program, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1007159DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6049957PMC
July 2018

PaRSnIP: sequence-based protein solubility prediction using gradient boosting machine.

Bioinformatics 2018 04;34(7):1092-1098

Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1093/bioinformatics/btx662DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6031027PMC
April 2018

Antibodyomics: bioinformatics technologies for understanding B-cell immunity to HIV-1.

Immunol Rev 2017 01;275(1):108-128

Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.

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http://dx.doi.org/10.1111/imr.12480DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5516196PMC
January 2017

Maturation and Diversity of the VRC01-Antibody Lineage over 15 Years of Chronic HIV-1 Infection.

Cell 2015 04 9;161(3):470-485. Epub 2015 Apr 9.

Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA; Department of Biochemistry and Molecular Biophysics and Department of Systems Biology, Columbia University, New York, NY 10032, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2015.03.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4706178PMC
April 2015

Computational prediction of N-linked glycosylation incorporating structural properties and patterns.

Bioinformatics 2012 Sep 10;28(17):2249-55. Epub 2012 Jul 10.

Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MA 20892, USA.

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http://dx.doi.org/10.1093/bioinformatics/bts426DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3426846PMC
September 2012

Structural basis for norovirus inhibition and fucose mimicry by citrate.

J Virol 2012 Jan 26;86(1):284-92. Epub 2011 Oct 26.

Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland 20892, USA.

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http://dx.doi.org/10.1128/JVI.05909-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3255897PMC
January 2012

Structural conservation of druggable hot spots in protein-protein interfaces.

Proc Natl Acad Sci U S A 2011 Aug 1;108(33):13528-33. Epub 2011 Aug 1.

Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA.

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http://dx.doi.org/10.1073/pnas.1101835108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3158149PMC
August 2011

Where does amantadine bind to the influenza virus M2 proton channel?

Trends Biochem Sci 2010 Sep 8;35(9):471-5. Epub 2010 Apr 8.

Department of Biomedical Engineering, Boston University, 44 Cummington Street, Boston, MA 02215, USA.

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http://dx.doi.org/10.1016/j.tibs.2010.03.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2919587PMC
September 2010

Domain motion and interdomain hot spots in a multidomain enzyme.

Protein Sci 2010 Sep;19(9):1662-72

Department of Biomedical Engineering, Boston University, Boston, Massachusetts 02215, USA.

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http://dx.doi.org/10.1002/pro.446DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2975130PMC
September 2010

Binding hot spots and amantadine orientation in the influenza a virus M2 proton channel.

Biophys J 2009 Nov;97(10):2846-53

Department of Biomedical Engineering, Boston University, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1016/j.bpj.2009.09.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2776279PMC
November 2009

Detection of ligand binding hot spots on protein surfaces via fragment-based methods: application to DJ-1 and glucocerebrosidase.

J Comput Aided Mol Des 2009 Aug 12;23(8):491-500. Epub 2009 Jun 12.

Department of Biochemistry, Rosenstiel Basic Medical Sciences Center, Brandeis University, 415 South Street MS 029, Waltham, MA 02454, USA.

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http://dx.doi.org/10.1007/s10822-009-9283-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2889209PMC
August 2009

DARS (Decoys As the Reference State) potentials for protein-protein docking.

Biophys J 2008 Nov 1;95(9):4217-27. Epub 2008 Aug 1.

Department of Biomedical Engineering, and Program in Bioinformatics, Boston University, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1529/biophysj.108.135814DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2567923PMC
November 2008